Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0006_E01
         (448 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_01_0474 - 3666236-3668050                                           31   0.56 
04_04_0786 - 28052981-28053040,28053123-28053222,28053447-280535...    29   1.3  
10_08_0781 + 20509033-20509714,20510048-20510191,20510604-205107...    29   2.3  
05_03_0245 + 10890555-10890962                                         28   3.9  
05_03_0244 + 10857139-10857516                                         28   3.9  
02_05_0707 + 31096628-31096630,31097037-31097405,31097477-31101715     27   5.2  
10_01_0256 - 2688172-2688786,2690779-2690857,2691567-2691652,269...    27   6.9  
02_05_0046 - 25398412-25398594,25399022-25399060,25399896-254003...    27   6.9  

>11_01_0474 - 3666236-3668050
          Length = 604

 Score = 30.7 bits (66), Expect = 0.56
 Identities = 12/29 (41%), Positives = 15/29 (51%), Gaps = 1/29 (3%)
 Frame = +2

Query: 155 PCNAFGGKCTEAETDC-PAGTHITAKGLC 238
           PC+A GG C E E  C  +  H+    LC
Sbjct: 47  PCSAAGGSCAETEASCRNSAGHVVRLSLC 75


>04_04_0786 -
           28052981-28053040,28053123-28053222,28053447-28053574,
           28053654-28053821,28053901-28054013,28054135-28054287,
           28054385-28054528,28054794-28055529
          Length = 533

 Score = 29.5 bits (63), Expect = 1.3
 Identities = 18/50 (36%), Positives = 23/50 (46%)
 Frame = +2

Query: 218 ITAKGLCPSQQHRGVECCHSVLRKINTCRSHGGECMDRCPENLTYNNADD 367
           ITAKG    +Q   V  C  +L  ++ C   G    D  PEN    +ADD
Sbjct: 181 ITAKGSYSERQAAAV--CRDILTVVHVCHFMGVIHRDLKPENFLLASADD 228


>10_08_0781 +
           20509033-20509714,20510048-20510191,20510604-20510719,
           20511356-20511520,20511822-20512043,20512613-20512735
          Length = 483

 Score = 28.7 bits (61), Expect = 2.3
 Identities = 14/40 (35%), Positives = 19/40 (47%)
 Frame = +2

Query: 248 QHRGVECCHSVLRKINTCRSHGGECMDRCPENLTYNNADD 367
           + +  E    ++  I TC SHG    D  PEN    +ADD
Sbjct: 171 ERKAAELIKIIVGIIETCHSHGVMHRDLKPENFLLLDADD 210


>05_03_0245 + 10890555-10890962
          Length = 135

 Score = 27.9 bits (59), Expect = 3.9
 Identities = 17/65 (26%), Positives = 25/65 (38%)
 Frame = +2

Query: 170 GGKCTEAETDCPAGTHITAKGLCPSQQHRGVECCHSVLRKINTCRSHGGECMDRCPENLT 349
           GG+C +      +G H    G C      G  CC      + + R + G C ++C    T
Sbjct: 74  GGRCVDTGA---SGEHC---GGCNKACKHGRSCCGGRCVDLLSDRDNCGSCSNQCSNKCT 127

Query: 350 YNNAD 364
           Y   D
Sbjct: 128 YGFCD 132


>05_03_0244 + 10857139-10857516
          Length = 125

 Score = 27.9 bits (59), Expect = 3.9
 Identities = 17/65 (26%), Positives = 25/65 (38%)
 Frame = +2

Query: 170 GGKCTEAETDCPAGTHITAKGLCPSQQHRGVECCHSVLRKINTCRSHGGECMDRCPENLT 349
           GG+C +      +G H    G C      G  CC      + + R + G C ++C    T
Sbjct: 65  GGRCVDTGA---SGEHC---GGCNKACKHGRSCCGGRCVDLLSDRDNCGSCSNQCSNKCT 118

Query: 350 YNNAD 364
           Y   D
Sbjct: 119 YGFCD 123


>02_05_0707 + 31096628-31096630,31097037-31097405,31097477-31101715
          Length = 1536

 Score = 27.5 bits (58), Expect = 5.2
 Identities = 14/55 (25%), Positives = 23/55 (41%), Gaps = 6/55 (10%)
 Frame = +2

Query: 116 IEPSKATLVYDEQPCNAFGGKCT------EAETDCPAGTHITAKGLCPSQQHRGV 262
           I+P  A     EQPC + GG C+      + E  C +   +     C S+  + +
Sbjct: 447 IQPGNAVTNLKEQPCKSSGGTCSPELHTVKEEKSCSSSQSLNNSQSCSSEHAKTI 501


>10_01_0256 -
           2688172-2688786,2690779-2690857,2691567-2691652,
           2693046-2693113,2695175-2695244,2696191-2696320,
           2696924-2697906
          Length = 676

 Score = 27.1 bits (57), Expect = 6.9
 Identities = 15/37 (40%), Positives = 18/37 (48%)
 Frame = +2

Query: 167 FGGKCTEAETDCPAGTHITAKGLCPSQQHRGVECCHS 277
           FGG    A   C AG    A  + PS   +GV CCH+
Sbjct: 77  FGGAPGGARFVC-AGAGPLALSVPPSVSRQGVPCCHT 112


>02_05_0046 - 25398412-25398594,25399022-25399060,25399896-25400360,
            25400758-25400816,25400920-25401748,25402554-25402898,
            25402973-25403435,25403537-25403640,25403692-25403901,
            25404933-25405088,25405774-25406052,25406237-25406986,
            25407141-25407232,25407977-25408361,25408672-25408752,
            25409196-25409354,25409399-25409506,25409604-25409666,
            25409764-25409835,25409932-25410366
          Length = 1758

 Score = 27.1 bits (57), Expect = 6.9
 Identities = 9/22 (40%), Positives = 14/22 (63%)
 Frame = +2

Query: 227  KGLCPSQQHRGVECCHSVLRKI 292
            +   P+Q +RG +CCH+  R I
Sbjct: 1626 RSFTPAQDNRGSDCCHACERHI 1647


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,920,629
Number of Sequences: 37544
Number of extensions: 194589
Number of successful extensions: 458
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 449
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 458
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 859680288
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)