Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0006_D24
         (454 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_45157| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   1.8  
SB_162| Best HMM Match : Extensin_2 (HMM E-Value=0.79)                 29   2.4  
SB_17658| Best HMM Match : GAS2 (HMM E-Value=6.9e-09)                  29   2.4  
SB_13995| Best HMM Match : ASC (HMM E-Value=0.0034)                    29   2.4  
SB_44732| Best HMM Match : TSP_1 (HMM E-Value=0)                       27   5.5  
SB_42661| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   5.5  
SB_19463| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   5.5  
SB_18957| Best HMM Match : zf-TAZ (HMM E-Value=3.7)                    27   5.5  
SB_46562| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   5.5  
SB_53911| Best HMM Match : Ald_Xan_dh_C2 (HMM E-Value=0)               27   9.6  
SB_8486| Best HMM Match : Granulin (HMM E-Value=0)                     27   9.6  

>SB_45157| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2870

 Score = 29.1 bits (62), Expect = 1.8
 Identities = 17/52 (32%), Positives = 20/52 (38%)
 Frame = +3

Query: 162  CTEAETDCPAGTHITAKGLCPSQQHRGVECCHSVLRKINTCRSHGGECMDRC 317
            C +    CPA      K  CP       ECC +VL+ I   R H   C   C
Sbjct: 1246 CLKDARGCPATCVEDCKPGCPP------ECCFAVLKPIQENREHSQSCPKIC 1291



 Score = 27.9 bits (59), Expect = 4.2
 Identities = 18/56 (32%), Positives = 23/56 (41%), Gaps = 1/56 (1%)
 Frame = +3

Query: 162  CTEAETDCPAGTHI-TAKGLCPSQQHRGVECCHSVLRKINTCRSHGGECMDRCPEN 326
            C+E    CP        K  CPS      ECC +VL  +   +SH   C   C E+
Sbjct: 1304 CSEHSNACPQECSTDNCKPSCPS------ECCLTVLTPLKENKSHQEGCPAVCSES 1353


>SB_162| Best HMM Match : Extensin_2 (HMM E-Value=0.79)
          Length = 820

 Score = 28.7 bits (61), Expect = 2.4
 Identities = 14/44 (31%), Positives = 24/44 (54%)
 Frame = -2

Query: 258 NDNILRPYAVDLDKDLSQ*CEYQPDSPFQLRYTSRRTHYKVVRR 127
           +D  L+P  VD +K++++ CE Q  SP       RR   + +R+
Sbjct: 688 SDQALKPNNVDENKNITRDCELQMKSPSATSLEDRRQEEEELRQ 731


>SB_17658| Best HMM Match : GAS2 (HMM E-Value=6.9e-09)
          Length = 959

 Score = 28.7 bits (61), Expect = 2.4
 Identities = 14/44 (31%), Positives = 24/44 (54%)
 Frame = -2

Query: 258 NDNILRPYAVDLDKDLSQ*CEYQPDSPFQLRYTSRRTHYKVVRR 127
           +D  L+P  VD +K++++ CE Q  SP       RR   + +R+
Sbjct: 827 SDQALKPNNVDENKNITRDCELQMKSPSATSLEDRRQEEEELRQ 870


>SB_13995| Best HMM Match : ASC (HMM E-Value=0.0034)
          Length = 610

 Score = 28.7 bits (61), Expect = 2.4
 Identities = 11/28 (39%), Positives = 18/28 (64%), Gaps = 1/28 (3%)
 Frame = +3

Query: 264 LRKINTCRSHGG-ECMDRCPENLTYKNA 344
           L ++N     GG +C+++CP+  TYK A
Sbjct: 104 LNRVNMMYQEGGLKCLEKCPQPCTYKFA 131


>SB_44732| Best HMM Match : TSP_1 (HMM E-Value=0)
          Length = 675

 Score = 27.5 bits (58), Expect = 5.5
 Identities = 13/38 (34%), Positives = 18/38 (47%), Gaps = 1/38 (2%)
 Frame = +3

Query: 243 VECCHSVLRKINTCRSHGGECMDRC-PENLTYKNADDC 353
           V C   V+R++ TC + G  C D   PE +      DC
Sbjct: 578 VTCGEGVVRRVVTCSAGGNRCQDDTKPEVVKLCELPDC 615


>SB_42661| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1717

 Score = 27.5 bits (58), Expect = 5.5
 Identities = 19/75 (25%), Positives = 28/75 (37%), Gaps = 2/75 (2%)
 Frame = +3

Query: 135  QPCNAFGGKCTEA--ETDCPAGTHITAKGLCPSQQHRGVECCHSVLRKINTCRSHGGECM 308
            Q C  + G   +A  + DCP     + +G C +   R  +C           +  G +C 
Sbjct: 1573 QKCECYPGWAGDACDKLDCPGSPPCSGQGECSNTNPRRCQCFP---------KWGGEKCE 1623

Query: 309  DRCPENLTYKNADDC 353
              C     Y NA DC
Sbjct: 1624 IPCLNGYNYGNASDC 1638


>SB_19463| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 307

 Score = 27.5 bits (58), Expect = 5.5
 Identities = 13/32 (40%), Positives = 20/32 (62%)
 Frame = -1

Query: 394 LLN*NYKQILFLILQSSAFLYVRFSGHLSMHS 299
           L++ +Y+ IL L+   + FLYV+F   L  HS
Sbjct: 3   LISYHYRTILKLLFALTLFLYVKFWFQLGSHS 34


>SB_18957| Best HMM Match : zf-TAZ (HMM E-Value=3.7)
          Length = 117

 Score = 27.5 bits (58), Expect = 5.5
 Identities = 20/76 (26%), Positives = 35/76 (46%)
 Frame = +3

Query: 78  INQSNGVIEPSKATLVYDEQPCNAFGGKCTEAETDCPAGTHITAKGLCPSQQHRGVECCH 257
           +N    +I  + + +V+D+Q     GG+C  A  D    +H    G C +  H G +C  
Sbjct: 11  VNGGQWLIAQAASVIVHDDQCVIVHGGQCMIAHGDRCTVSH---SGRC-TVAHGG-QCV- 64

Query: 258 SVLRKINTCRSHGGEC 305
            ++       +HGG+C
Sbjct: 65  -IVHGSQCVIAHGGQC 79


>SB_46562| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 280

 Score = 27.5 bits (58), Expect = 5.5
 Identities = 11/17 (64%), Positives = 12/17 (70%)
 Frame = -1

Query: 82  LIRKTHRKHTKNGRRKH 32
           LIR THRKH KN +  H
Sbjct: 139 LIRSTHRKHCKNEKCTH 155


>SB_53911| Best HMM Match : Ald_Xan_dh_C2 (HMM E-Value=0)
          Length = 817

 Score = 26.6 bits (56), Expect = 9.6
 Identities = 9/18 (50%), Positives = 11/18 (61%)
 Frame = +3

Query: 147 AFGGKCTEAETDCPAGTH 200
           +FG  C+E E DC  G H
Sbjct: 655 SFGAACSEVEIDCLTGDH 672


>SB_8486| Best HMM Match : Granulin (HMM E-Value=0)
          Length = 878

 Score = 26.6 bits (56), Expect = 9.6
 Identities = 24/84 (28%), Positives = 30/84 (35%), Gaps = 12/84 (14%)
 Frame = +3

Query: 141 CNAFGGKCTEAETDCPAGTHITAKGL----CP---SQQHRGVECCHSVLRKINTCRSHGG 299
           CN+  G C+E ++  P      AK L    CP   SQ   G  CC     +   C     
Sbjct: 392 CNSSSGTCSEGDSVLPLFKKTPAKQLKNVVCPDETSQCPDGNTCCKLSSGQYGCCPLPNA 451

Query: 300 ECMDR----CPENLTYKNADD-CN 356
            C D     CP   T   +   CN
Sbjct: 452 VCCDDGVHCCPNGYTCDTSSGRCN 475


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,847,788
Number of Sequences: 59808
Number of extensions: 245174
Number of successful extensions: 600
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 539
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 600
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 908427626
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)