Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0006_D23
         (519 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_02_0058 - 3704138-3704257,3704355-3704421,3704502-3704641,370...   177   4e-45

>09_02_0058 -
           3704138-3704257,3704355-3704421,3704502-3704641,
           3705332-3705424,3705927-3706109,3706491-3706595,
           3706738-3706818,3706905-3707046,3707207-3707286,
           3707456-3707568,3708051-3708297,3708659-3709051
          Length = 587

 Score =  177 bits (431), Expect = 4e-45
 Identities = 84/156 (53%), Positives = 112/156 (71%)
 Frame = +1

Query: 1   VELAEDTKWRVRLAIIEHMPLLAGQLGQEFFDEKLTGLCMSWLIDHVYAIREAATLNLKK 180
           VELAED  WRVRLAIIE++PLLA QLG  FFD+KL  LCM WL D V++IR+AA  NLK+
Sbjct: 403 VELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLEDKVFSIRDAAANNLKR 462

Query: 181 LVEQYGSTWAETNVIPKVLTMSREQNYLHRMTYLFCINVLSEVCGKDITTRVLLPTVLSM 360
           L E++G  WA  ++IP+VL      +YL+RMT L  I++L+ V G +IT + LLP V++ 
Sbjct: 463 LAEEFGPEWAMQHIIPQVLEKINNPHYLYRMTILQAISLLAPVMGAEITCQQLLPVVINS 522

Query: 361 ADDSVANVRFNVAKTLQKMAPFLDPAVIQPQVKPVL 468
           + D V N++FNVAK LQ + P LD +V++  VKP L
Sbjct: 523 SKDRVPNIKFNVAKVLQALIPILDQSVVEKNVKPCL 558



 Score = 56.4 bits (130), Expect = 1e-08
 Identities = 38/156 (24%), Positives = 67/156 (42%)
 Frame = +1

Query: 1   VELAEDTKWRVRLAIIEHMPLLAGQLGQEFFDEKLTGLCMSWLIDHVYAIREAATLNLKK 180
           V  ++D  WRVR  +   +  L   +G E   E+L    +  L D+   +R AA   + K
Sbjct: 247 VNFSQDKSWRVRYMVANQLYELCEAVGPEHSREQLVPAYVRLLRDNEAEVRIAAAGKVTK 306

Query: 181 LVEQYGSTWAETNVIPKVLTMSREQNYLHRMTYLFCINVLSEVCGKDITTRVLLPTVLSM 360
                    A  +++P V  +S + +   R      I  ++ V GK+ T   LLP  LS+
Sbjct: 307 FCRILSPQLAIQHILPCVKELSSDSSQHVRSALASVIMGMAPVLGKEATIEQLLPIFLSL 366

Query: 361 ADDSVANVRFNVAKTLQKMAPFLDPAVIQPQVKPVL 468
             D   +VR N+   L ++   +   ++   + P +
Sbjct: 367 LKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAI 402



 Score = 42.3 bits (95), Expect = 2e-04
 Identities = 31/154 (20%), Positives = 63/154 (40%)
 Frame = +1

Query: 4   ELAEDTKWRVRLAIIEHMPLLAGQLGQEFFDEKLTGLCMSWLIDHVYAIREAATLNLKKL 183
           +L +D +  VRL  +E    L   L  +     +  + +++  D  + +R      L +L
Sbjct: 209 DLTQDDQDSVRLLAVEGCAALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYEL 268

Query: 184 VEQYGSTWAETNVIPKVLTMSREQNYLHRMTYLFCINVLSEVCGKDITTRVLLPTVLSMA 363
            E  G   +   ++P  + + R+     R+     +     +    +  + +LP V  ++
Sbjct: 269 CEAVGPEHSREQLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILSPQLAIQHILPCVKELS 328

Query: 364 DDSVANVRFNVAKTLQKMAPFLDPAVIQPQVKPV 465
            DS  +VR  +A  +  MAP L       Q+ P+
Sbjct: 329 SDSSQHVRSALASVIMGMAPVLGKEATIEQLLPI 362



 Score = 34.7 bits (76), Expect = 0.045
 Identities = 28/157 (17%), Positives = 63/157 (40%)
 Frame = +1

Query: 4   ELAEDTKWRVRLAIIEHMPLLAGQLGQEFFDEKLTGLCMSWLIDHVYAIREAATLNLKKL 183
           +L +D    VR A   ++   A  + Q +   ++  +      D   ++R  A      L
Sbjct: 170 QLCQDDMPMVRRAAASNLGKFAATVEQNYLKTEVMSIFDDLTQDDQDSVRLLAVEGCAAL 229

Query: 184 VEQYGSTWAETNVIPKVLTMSREQNYLHRMTYLFCINVLSEVCGKDITTRVLLPTVLSMA 363
            +         +++P ++  S+++++  R      +  L E  G + +   L+P  + + 
Sbjct: 230 GKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEHSREQLVPAYVRLL 289

Query: 364 DDSVANVRFNVAKTLQKMAPFLDPAVIQPQVKPVLEK 474
            D+ A VR   A  + K    L P +    + P +++
Sbjct: 290 RDNEAEVRIAAAGKVTKFCRILSPQLAIQHILPCVKE 326



 Score = 32.3 bits (70), Expect = 0.24
 Identities = 25/140 (17%), Positives = 59/140 (42%)
 Frame = +1

Query: 1   VELAEDTKWRVRLAIIEHMPLLAGQLGQEFFDEKLTGLCMSWLIDHVYAIREAATLNLKK 180
           V L  D +  VR+A    +      L  +   + +         D    +R A    +  
Sbjct: 286 VRLLRDNEAEVRIAAAGKVTKFCRILSPQLAIQHILPCVKELSSDSSQHVRSALASVIMG 345

Query: 181 LVEQYGSTWAETNVIPKVLTMSREQNYLHRMTYLFCINVLSEVCGKDITTRVLLPTVLSM 360
           +    G       ++P  L++ +++    R+  +  ++ +++V G D+ ++ LLP ++ +
Sbjct: 346 MAPVLGKEATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVEL 405

Query: 361 ADDSVANVRFNVAKTLQKMA 420
           A+D    VR  + + +  +A
Sbjct: 406 AEDRHWRVRLAIIEYIPLLA 425



 Score = 31.1 bits (67), Expect = 0.55
 Identities = 23/117 (19%), Positives = 48/117 (41%)
 Frame = +1

Query: 133 DHVYAIREAATLNLKKLVEQYGSTWAETNVIPKVLTMSREQNYLHRMTYLFCINVLSEVC 312
           D +  +R AA  NL K        + +T V+     ++++     R+  +     L ++ 
Sbjct: 174 DDMPMVRRAAASNLGKFAATVEQNYLKTEVMSIFDDLTQDDQDSVRLLAVEGCAALGKLL 233

Query: 313 GKDITTRVLLPTVLSMADDSVANVRFNVAKTLQKMAPFLDPAVIQPQVKPVLEKFER 483
                   +LP +++ + D    VR+ VA  L ++   + P   + Q+ P   +  R
Sbjct: 234 EPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEHSREQLVPAYVRLLR 290


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,585,165
Number of Sequences: 37544
Number of extensions: 289145
Number of successful extensions: 605
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 589
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 604
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1130733700
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)