Samia BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0006_D22
         (561 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q4XZW0 Cluster: Putative uncharacterized protein; n=1; ...    38   0.12 
UniRef50_O05963 Cluster: Uncharacterized protein RP436; n=9; Ric...    34   2.6  

>UniRef50_Q4XZW0 Cluster: Putative uncharacterized protein; n=1;
           Plasmodium chabaudi|Rep: Putative uncharacterized
           protein - Plasmodium chabaudi
          Length = 525

 Score = 38.3 bits (85), Expect = 0.12
 Identities = 16/44 (36%), Positives = 26/44 (59%)
 Frame = +1

Query: 391 FHETSLYYEQIQRIIMLLAWHFWCAITMFCSFFMTNHYCGSIYQ 522
           F+  S YYE + +  M    HF+  +++FC FF   H+C +IY+
Sbjct: 483 FNIVSFYYELLNKNNM----HFYSTLSLFCFFFFDFHFCNNIYK 522


>UniRef50_O05963 Cluster: Uncharacterized protein RP436; n=9;
           Rickettsia|Rep: Uncharacterized protein RP436 -
           Rickettsia prowazekii
          Length = 141

 Score = 33.9 bits (74), Expect = 2.6
 Identities = 15/37 (40%), Positives = 23/37 (62%), Gaps = 1/37 (2%)
 Frame = +1

Query: 388 HFHETSLYYEQIQRIIMLLAWHFW-CAITMFCSFFMT 495
           H + T LYY+    II L+++ FW C +++F  FF T
Sbjct: 81  HKNLTKLYYQYETFIIFLISFPFWGCFVSLFSGFFKT 117


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 455,348,857
Number of Sequences: 1657284
Number of extensions: 7714908
Number of successful extensions: 11615
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 11385
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11613
length of database: 575,637,011
effective HSP length: 96
effective length of database: 416,537,747
effective search space used: 37488397230
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)