Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0006_D22
         (561 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g06130.2 68418.m00682 chaperone protein dnaJ-related similar ...    28   4.9  
At5g06130.1 68418.m00681 chaperone protein dnaJ-related similar ...    28   4.9  
At4g27100.1 68417.m03895 RabGAP/TBC domain-containing protein si...    27   6.5  
At3g59170.1 68416.m06597 F-box family protein contains F-box dom...    27   8.6  

>At5g06130.2 68418.m00682 chaperone protein dnaJ-related similar to
           unknown protein (pir||T00468); contains Pfam PF00684 :
           DnaJ central domain (4 repeats)
          Length = 315

 Score = 27.9 bits (59), Expect = 4.9
 Identities = 12/31 (38%), Positives = 18/31 (58%)
 Frame = -1

Query: 531 TLVLVDTPAVMISHKK*TKHCNGTPEMPCQK 439
           TL+L++   V    KK  K+C GT  +PC +
Sbjct: 221 TLMLIEVNNVKQQEKKRCKYCLGTGYLPCAR 251


>At5g06130.1 68418.m00681 chaperone protein dnaJ-related similar to
           unknown protein (pir||T00468); contains Pfam PF00684 :
           DnaJ central domain (4 repeats)
          Length = 231

 Score = 27.9 bits (59), Expect = 4.9
 Identities = 12/31 (38%), Positives = 18/31 (58%)
 Frame = -1

Query: 531 TLVLVDTPAVMISHKK*TKHCNGTPEMPCQK 439
           TL+L++   V    KK  K+C GT  +PC +
Sbjct: 137 TLMLIEVNNVKQQEKKRCKYCLGTGYLPCAR 167


>At4g27100.1 68417.m03895 RabGAP/TBC domain-containing protein
           similar to GTPase activating protein [Yarrowia
           lipolytica] GI:2370595; contains Pfam profile PF00566:
           TBC domain
          Length = 487

 Score = 27.5 bits (58), Expect = 6.5
 Identities = 14/30 (46%), Positives = 19/30 (63%), Gaps = 3/30 (10%)
 Frame = +2

Query: 410 TMNKFSESLCFWHGI-SGVPLQ--CFVHFL 490
           T++ FS  LCFW+G+ + V LQ  C  H L
Sbjct: 250 TLHIFSMYLCFWYGLFTSVSLQSGCIKHVL 279


>At3g59170.1 68416.m06597 F-box family protein contains F-box domain
           Pfam:PF00646
          Length = 473

 Score = 27.1 bits (57), Expect = 8.6
 Identities = 14/56 (25%), Positives = 29/56 (51%)
 Frame = -1

Query: 204 IAFYCVKYVNYVYMKNQ*SRNLVKFVSCVIVF*KSTRICDNTYNKVSIIKVLSGRI 37
           + F C K  ++ YM +  + N V F +  +V+ +  ++  N Y KV+   ++  +I
Sbjct: 240 LTFCCQKMSSFGYMHDDENPNNVSFDTPNLVYLEYAQVIANNYPKVNFDLLVEAKI 295


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,940,294
Number of Sequences: 28952
Number of extensions: 172512
Number of successful extensions: 267
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 266
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 267
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1072696904
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)