Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0006_D21
         (451 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC25G10.08 |||translation initiation factor eIF3b |Schizosacch...    26   2.3  
SPBC12D12.06 |srb11||cyclin CycC|Schizosaccharomyces pombe|chr 2...    25   7.1  
SPBC25D12.02c |dnt1||nucleolar protein Dnt1|Schizosaccharomyces ...    24   9.4  
SPAC2F3.05c |||xylose and arabinose reductase |Schizosaccharomyc...    24   9.4  

>SPAC25G10.08 |||translation initiation factor eIF3b
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 725

 Score = 26.2 bits (55), Expect = 2.3
 Identities = 9/16 (56%), Positives = 11/16 (68%)
 Frame = +3

Query: 294 EWDPEFRMVTEFNTLW 341
           EWDP  R VT  +T+W
Sbjct: 576 EWDPSGRYVTTSSTIW 591


>SPBC12D12.06 |srb11||cyclin CycC|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 228

 Score = 24.6 bits (51), Expect = 7.1
 Identities = 8/21 (38%), Positives = 16/21 (76%)
 Frame = -1

Query: 388 LHLIRKNEGYKIIIVVQRVLN 326
           L LI+  + +K+I+ VQR+++
Sbjct: 200 LDLIKSTDAFKVILCVQRIIS 220


>SPBC25D12.02c |dnt1||nucleolar protein Dnt1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 599

 Score = 24.2 bits (50), Expect = 9.4
 Identities = 10/42 (23%), Positives = 17/42 (40%)
 Frame = +2

Query: 275 PRGGIPRMGSRIQNGYRIQYPLDNNYNFIAFIFPNQVQFPNQ 400
           P   I  +  ++Q  Y+  YP ++N N            PN+
Sbjct: 25  PSSSISLLKEKVQETYKSLYPFESNINIRNIKNEESYDIPNE 66


>SPAC2F3.05c |||xylose and arabinose reductase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 275

 Score = 24.2 bits (50), Expect = 9.4
 Identities = 9/30 (30%), Positives = 18/30 (60%)
 Frame = +2

Query: 110 QSGDLHEYKIQKADRKQREFIYWDKKRDWN 199
           ++GD+ +++I K D ++   +  D   DWN
Sbjct: 240 ENGDVFDFEISKEDMEKLYNLDEDYHSDWN 269


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,639,538
Number of Sequences: 5004
Number of extensions: 27663
Number of successful extensions: 71
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 70
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 71
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 166231220
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)