Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0006_D21
         (451 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_16461| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   3.1  
SB_46504| Best HMM Match : DUF1373 (HMM E-Value=7.5)                   28   4.1  
SB_15247| Best HMM Match : Hormone_5 (HMM E-Value=0.98)                27   7.2  
SB_30515| Best HMM Match : Lyase_8 (HMM E-Value=1.2e-05)               27   7.2  

>SB_16461| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 173

 Score = 28.3 bits (60), Expect = 3.1
 Identities = 9/37 (24%), Positives = 22/37 (59%), Gaps = 4/37 (10%)
 Frame = +1

Query: 7   LYLYLCYKICHINYFYY----YNLKWISCARFLYWVL 105
           ++L+    +CH+NY Y+    +++ W+    ++Y V+
Sbjct: 121 IWLFHVSLLCHVNYMYHVIWLFHVSWLCHVNYMYHVI 157


>SB_46504| Best HMM Match : DUF1373 (HMM E-Value=7.5)
          Length = 293

 Score = 27.9 bits (59), Expect = 4.1
 Identities = 14/48 (29%), Positives = 26/48 (54%), Gaps = 1/48 (2%)
 Frame = +2

Query: 299 GSRIQNGYRIQY-PLDNNYNFIAFIFPNQVQFPNQTPFQSRQTSTPTL 439
           G+ +Q+G  +Q+ P+    + I    P++   P+Q PF++  TS   L
Sbjct: 98  GNNVQSGVLLQHSPISTPRSLIDTSQPSRHSSPSQEPFETTATSLDNL 145


>SB_15247| Best HMM Match : Hormone_5 (HMM E-Value=0.98)
          Length = 997

 Score = 27.1 bits (57), Expect = 7.2
 Identities = 14/39 (35%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
 Frame = +2

Query: 263 PQDPPRGGIPRMGSR-IQNGYRIQYPLDNNYNFIAFIFP 376
           P   P+  +P+ G+  +Q GY+   PL +NY  +  IFP
Sbjct: 638 PISNPKTSVPQGGATPMQFGYQGYGPLQHNYGDMNTIFP 676


>SB_30515| Best HMM Match : Lyase_8 (HMM E-Value=1.2e-05)
          Length = 1364

 Score = 27.1 bits (57), Expect = 7.2
 Identities = 11/23 (47%), Positives = 16/23 (69%), Gaps = 1/23 (4%)
 Frame = +2

Query: 275 PRGGIPRMGSRIQNGYR-IQYPL 340
           P  G+P+MG   Q GYR +Q+P+
Sbjct: 318 PGQGLPKMGETWQQGYRWLQFPV 340


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,233,328
Number of Sequences: 59808
Number of extensions: 203075
Number of successful extensions: 543
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 454
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 521
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 896151577
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)