Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0006_D21
         (451 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ325126-1|ABD14140.1|  174|Apis mellifera complementary sex det...    21   4.7  
DQ325109-1|ABD14123.1|  177|Apis mellifera complementary sex det...    21   8.2  
DQ325108-1|ABD14122.1|  177|Apis mellifera complementary sex det...    21   8.2  
DQ325107-1|ABD14121.1|  176|Apis mellifera complementary sex det...    21   8.2  
DQ325106-1|ABD14120.1|  177|Apis mellifera complementary sex det...    21   8.2  
AY350615-1|AAQ57657.1|  410|Apis mellifera complementary sex det...    21   8.2  

>DQ325126-1|ABD14140.1|  174|Apis mellifera complementary sex
           determiner protein.
          Length = 174

 Score = 21.4 bits (43), Expect = 4.7
 Identities = 10/39 (25%), Positives = 17/39 (43%)
 Frame = +2

Query: 290 PRMGSRIQNGYRIQYPLDNNYNFIAFIFPNQVQFPNQTP 406
           P++ S + N Y      +NNY  + +   +  Q P   P
Sbjct: 79  PKIISSLSNNYNYSNYNNNNYKQLCYNINHIEQIPVPVP 117


>DQ325109-1|ABD14123.1|  177|Apis mellifera complementary sex
           determiner protein.
          Length = 177

 Score = 20.6 bits (41), Expect = 8.2
 Identities = 8/24 (33%), Positives = 15/24 (62%)
 Frame = +1

Query: 343 QQL*FYSLHFXXXXAVPKPNTVPV 414
           ++L +Y++++     VP P  VPV
Sbjct: 98  KKLQYYNINYIEQIPVPVPVPVPV 121


>DQ325108-1|ABD14122.1|  177|Apis mellifera complementary sex
           determiner protein.
          Length = 177

 Score = 20.6 bits (41), Expect = 8.2
 Identities = 8/24 (33%), Positives = 15/24 (62%)
 Frame = +1

Query: 343 QQL*FYSLHFXXXXAVPKPNTVPV 414
           ++L +Y++++     VP P  VPV
Sbjct: 98  KKLQYYNINYIEQIPVPVPVPVPV 121


>DQ325107-1|ABD14121.1|  176|Apis mellifera complementary sex
           determiner protein.
          Length = 176

 Score = 20.6 bits (41), Expect = 8.2
 Identities = 8/24 (33%), Positives = 15/24 (62%)
 Frame = +1

Query: 343 QQL*FYSLHFXXXXAVPKPNTVPV 414
           ++L +Y++++     VP P  VPV
Sbjct: 98  KKLQYYNINYIEQIPVPVPIPVPV 121


>DQ325106-1|ABD14120.1|  177|Apis mellifera complementary sex
           determiner protein.
          Length = 177

 Score = 20.6 bits (41), Expect = 8.2
 Identities = 8/24 (33%), Positives = 15/24 (62%)
 Frame = +1

Query: 343 QQL*FYSLHFXXXXAVPKPNTVPV 414
           ++L +Y++++     VP P  VPV
Sbjct: 98  KKLQYYNINYIEQIPVPVPVPVPV 121


>AY350615-1|AAQ57657.1|  410|Apis mellifera complementary sex
           determiner protein.
          Length = 410

 Score = 20.6 bits (41), Expect = 8.2
 Identities = 8/24 (33%), Positives = 15/24 (62%)
 Frame = +1

Query: 343 QQL*FYSLHFXXXXAVPKPNTVPV 414
           ++L +Y++++     VP P  VPV
Sbjct: 331 KKLQYYNINYIEQIPVPVPVPVPV 354


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 117,367
Number of Sequences: 438
Number of extensions: 2295
Number of successful extensions: 11
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 11820384
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)