Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0006_D20
         (502 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC13G1.10c |mug81||ATP-dependent RNA helicase Slh1|Schizosacch...    29   0.39 
SPAC4G8.03c |||RNA-binding protein|Schizosaccharomyces pombe|chr...    26   2.8  
SPBC15D4.01c ||SPBC2D10.21c|kinesin-like protein|Schizosaccharom...    26   3.7  
SPBC1306.01c ||SPBC409.22c|translation elongation factor G|Schiz...    26   3.7  
SPAC23E2.03c |ste7||meiotic suppressor protein Ste7|Schizosaccha...    25   8.4  
SPAC6F6.06c |rax2||cell polarity factor Rax2|Schizosaccharomyces...    25   8.4  

>SPBC13G1.10c |mug81||ATP-dependent RNA helicase
            Slh1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1935

 Score = 29.1 bits (62), Expect = 0.39
 Identities = 25/91 (27%), Positives = 46/91 (50%), Gaps = 6/91 (6%)
 Frame = +2

Query: 149  VQGLLSYPEICAKLINPNQNGKRPHLRKVNDP-SKRFGTYAFRLPDDXGEGGFWVSYEDP 325
            V  L+SYP++  ++   + +    +LR++N P +  F  +A   P    E GF+V   D 
Sbjct: 1815 VNSLISYPKMNIEVSQSSSDKLLLYLRRLNQPLNPDFYIFAPLFPKPQSE-GFFVLIIDS 1873

Query: 326  DT----AGNKASYVKTKNLGGVSI-MDLSMD 403
            +T    A  +AS+   +N   + + + +SMD
Sbjct: 1874 ETQELFAIRRASFAGRRNDDSIRLSLRISMD 1904


>SPAC4G8.03c |||RNA-binding protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 780

 Score = 26.2 bits (55), Expect = 2.8
 Identities = 12/31 (38%), Positives = 17/31 (54%), Gaps = 1/31 (3%)
 Frame = +3

Query: 24  PTNLSL-VSAPLDVRGSSIQTVKFPEFHRYT 113
           PT L    SA  DVR +S   +   +FH+Y+
Sbjct: 51  PTELKARTSATFDVRSASTSPINASDFHKYS 81


>SPBC15D4.01c ||SPBC2D10.21c|kinesin-like
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 633

 Score = 25.8 bits (54), Expect = 3.7
 Identities = 21/54 (38%), Positives = 28/54 (51%), Gaps = 6/54 (11%)
 Frame = +2

Query: 38  LGISTTGRTWKLDSDSEISGVPPI------HADKGGEAGPYTKVQGLLSYPEIC 181
           LG+S  G+T+ L   S+  GV  +      +A KG EA P T V+ L S  E C
Sbjct: 93  LGVSGAGKTYTLFGPSDRPGVAFLALDALFYAIKGREASPQT-VEFLRSQLEKC 145


>SPBC1306.01c ||SPBC409.22c|translation elongation factor
           G|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 770

 Score = 25.8 bits (54), Expect = 3.7
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = +2

Query: 107 IHADKGGEAGPYTKVQGLLSY 169
           +H  + G AG Y KV+G + Y
Sbjct: 562 LHKKQSGGAGQYAKVEGYIEY 582


>SPAC23E2.03c |ste7||meiotic suppressor protein
           Ste7|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 569

 Score = 24.6 bits (51), Expect = 8.4
 Identities = 14/39 (35%), Positives = 21/39 (53%), Gaps = 3/39 (7%)
 Frame = +3

Query: 9   KMVRLPTNLSLVSAPLDVR---GSSIQTVKFPEFHRYTP 116
           +++ +P NL+    PL      GSS +T + PEF   TP
Sbjct: 144 ELIMVPPNLA--GKPLSANSSFGSSAKTFQLPEFDSVTP 180


>SPAC6F6.06c |rax2||cell polarity factor Rax2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1155

 Score = 24.6 bits (51), Expect = 8.4
 Identities = 13/29 (44%), Positives = 16/29 (55%)
 Frame = -1

Query: 157 TLNFGIRTSFTTLIGVYRWNSGNFTV*IE 71
           T  F  + SFT+   +YRWN  N  V IE
Sbjct: 140 TFTFSDKPSFTS---IYRWNVTNSNVTIE 165


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,304,970
Number of Sequences: 5004
Number of extensions: 49417
Number of successful extensions: 144
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 142
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 144
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 198176188
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)