Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0006_D20
(502 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_04_0234 + 15187065-15188241,15188316-15188494 36 0.014
04_03_0649 - 18402976-18403220,18403305-18404499 36 0.024
03_05_1021 - 29750155-29750220,29750342-29750428,29750614-297507... 29 2.1
08_02_0969 - 23126389-23126670,23126764-23126947,23127017-231278... 28 4.8
12_02_0292 + 16979550-16980662,16983249-16983731 27 6.4
11_08_0097 + 28330565-28330645,28330768-28330986,28331066-283311... 27 6.4
05_03_0191 - 9521496-9521921 27 6.4
12_02_0362 + 17998110-17998345,17998877-17998958,18000309-180003... 27 8.5
03_03_0003 + 13631664-13632641 27 8.5
02_03_0074 + 14781763-14784191,14784888-14784978,14785180-147852... 27 8.5
01_01_1179 - 9393337-9393453,9395175-9395227,9395346-9395436 27 8.5
>11_04_0234 + 15187065-15188241,15188316-15188494
Length = 451
Score = 36.3 bits (80), Expect = 0.014
Identities = 37/141 (26%), Positives = 57/141 (40%), Gaps = 1/141 (0%)
Frame = +2
Query: 2 WIQNGAPTHKLVLGISTTGRTWKL-DSDSEISGVPPIHADKGGEAGPYTKVQGLLSYPEI 178
W+ G P KLV+GI GR+W L + D G P A G + G+++Y EI
Sbjct: 267 WLDAGLPPCKLVMGIPLFGRSWFLRNKDKNGLGAPTAAA---GTKQRKSNQIGVIAYAEI 323
Query: 179 CAKLINPNQNGKRPHLRKVNDPSKRFGTYAFRLPDDXGEGGFWVSYEDPDTAGNKASYVK 358
L K + +D ++ Y + G WVS++ K +V
Sbjct: 324 EEYL-------KSQSVFVTHD-NQSVADYFY-------SGDLWVSFDSAVVVQEKVEFVA 368
Query: 359 TKNLGGVSIMDLSMDDFAWSL 421
L G + +S DD ++L
Sbjct: 369 KSQLLGYFLSTISFDDSNYTL 389
>04_03_0649 - 18402976-18403220,18403305-18404499
Length = 479
Score = 35.5 bits (78), Expect = 0.024
Identities = 31/135 (22%), Positives = 54/135 (40%)
Frame = +2
Query: 2 WIQNGAPTHKLVLGISTTGRTWKLDSDSEISGVPPIHADKGGEAGPYTKVQGLLSYPEIC 181
W+ G P K+V+GI GR+W L + + P+ A + G + G +SY E+
Sbjct: 268 WLDAGVPASKVVMGIPLYGRSWFLRNKANSGVGAPVVAAGPKQRG--SNATGAMSYAEV- 324
Query: 182 AKLINPNQNGKRPHLRKVNDPSKRFGTYAFRLPDDXGEGGFWVSYEDPDTAGNKASYVKT 361
L G R + ++ S +Y G WV+++ K ++
Sbjct: 325 QWLAATATRGSRAVITAYDNAS--VASYV-------SVGDVWVAFDGVAVVAEKLAFAAR 375
Query: 362 KNLGGVSIMDLSMDD 406
L G + ++ DD
Sbjct: 376 CGLLGYFLWPVNYDD 390
>03_05_1021 -
29750155-29750220,29750342-29750428,29750614-29750799,
29750965-29751059,29751179-29751284,29751378-29751452,
29751548-29751679,29751782-29751961,29752371-29752567,
29752651-29752906
Length = 459
Score = 29.1 bits (62), Expect = 2.1
Identities = 16/52 (30%), Positives = 24/52 (46%)
Frame = +2
Query: 32 LVLGISTTGRTWKLDSDSEISGVPPIHADKGGEAGPYTKVQGLLSYPEICAK 187
LV+G + T L E+SG+P D GP K+ L++ E+ K
Sbjct: 365 LVVGGWNSSNTSHLQEIGELSGIPSYWIDSEQRIGPGNKISYKLNHGELVEK 416
>08_02_0969 -
23126389-23126670,23126764-23126947,23127017-23127834,
23127953-23128642
Length = 657
Score = 27.9 bits (59), Expect = 4.8
Identities = 15/40 (37%), Positives = 19/40 (47%)
Frame = -2
Query: 384 MDTPPRFFVFT*LALFPAVSGSS*ETQKPPSPXSSGRRKA 265
M T P +A A GS +T PPSP GRR++
Sbjct: 542 MMTVPNLGTLDPMADADANDGSQMQTPAPPSPAGEGRRRS 581
>12_02_0292 + 16979550-16980662,16983249-16983731
Length = 531
Score = 27.5 bits (58), Expect = 6.4
Identities = 9/19 (47%), Positives = 10/19 (52%)
Frame = +1
Query: 25 PQTCPWYQHHWTYVEARFR 81
P+ W QHHWT R R
Sbjct: 505 PEAKSWRQHHWTPARTRLR 523
>11_08_0097 +
28330565-28330645,28330768-28330986,28331066-28331144,
28331222-28331355,28331447-28331545,28331638-28331742,
28332377-28332451,28333671-28333757,28333854-28333889
Length = 304
Score = 27.5 bits (58), Expect = 6.4
Identities = 18/64 (28%), Positives = 26/64 (40%)
Frame = -1
Query: 457 FAALRIGYLSPVQRPRKIIHGKVHDGHTAKVLCFHVTSFVSGRVRIFVRNPEATFTXIIR 278
+ LRIG PV+ + GK H G F +G + I + NP +
Sbjct: 87 YGGLRIGLYEPVRTVKSFYVGKDHVGDVPLTKKI-AAGFTTGAIAISIANP-TDLVKVRL 144
Query: 277 KAEG 266
+AEG
Sbjct: 145 QAEG 148
>05_03_0191 - 9521496-9521921
Length = 141
Score = 27.5 bits (58), Expect = 6.4
Identities = 9/23 (39%), Positives = 12/23 (52%)
Frame = +1
Query: 13 WCAYPQTCPWYQHHWTYVEARFR 81
W P+ W++ HWT AR R
Sbjct: 119 WQRRPEAEKWWRRHWTPARARLR 141
>12_02_0362 +
17998110-17998345,17998877-17998958,18000309-18000392,
18000600-18000734,18001395-18001570,18001654-18001805,
18003730-18004575,18004961-18005301
Length = 683
Score = 27.1 bits (57), Expect = 8.5
Identities = 10/27 (37%), Positives = 14/27 (51%)
Frame = -3
Query: 131 LHHPYRRVSVELRKFHCLNRASTYVQW 51
+HHPY+ + +RKF A V W
Sbjct: 206 VHHPYKPLVEAIRKFKVAQNALAQVAW 232
>03_03_0003 + 13631664-13632641
Length = 325
Score = 27.1 bits (57), Expect = 8.5
Identities = 35/138 (25%), Positives = 51/138 (36%), Gaps = 1/138 (0%)
Frame = +2
Query: 8 QNGAPTHKLVLGISTTGRTWKLDSDSEISGVPPIHADKGGEAGPYTKVQGLLSYPEICAK 187
Q+ P VLG + TG++ S +E G I++D K+Q +P I K
Sbjct: 11 QSPKPKVVFVLGATATGKSKLAISIAERFGGEVINSD---------KIQVHDGFPIITNK 61
Query: 188 LINPNQNGKRPHLRKVNDPSKRFGTYAFRLPDDXGEGGFWVSYEDPDTAGNKASYVKTKN 367
+ + G HL V P F FR + P AG +YV+
Sbjct: 62 VTEEERAGVPHHLLGVLHPDADFTAEDFRREAAAAVARVLAAGRLPVVAGGSNTYVEALV 121
Query: 368 LGGVSIMDLSMDD-FAWS 418
GG + D F W+
Sbjct: 122 EGGGGAFRAAHDCLFLWT 139
>02_03_0074 +
14781763-14784191,14784888-14784978,14785180-14785230,
14785882-14785947,14786509-14786610
Length = 912
Score = 27.1 bits (57), Expect = 8.5
Identities = 9/18 (50%), Positives = 12/18 (66%)
Frame = -3
Query: 314 KKPRSHLHHXHQEGGRHR 261
++P+SH HH H G R R
Sbjct: 164 QQPQSHHHHHHHSGSRKR 181
>01_01_1179 - 9393337-9393453,9395175-9395227,9395346-9395436
Length = 86
Score = 27.1 bits (57), Expect = 8.5
Identities = 10/16 (62%), Positives = 13/16 (81%)
Frame = +2
Query: 185 KLINPNQNGKRPHLRK 232
K I PN++GK PH+RK
Sbjct: 15 KTIPPNRHGKAPHVRK 30
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,390,523
Number of Sequences: 37544
Number of extensions: 342786
Number of successful extensions: 919
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 896
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 919
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1059318940
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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