Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0006_D20
(502 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g19800.1 68417.m02904 glycosyl hydrolase family 18 protein si... 36 0.020
At4g19730.1 68417.m02897 glycosyl hydrolase family 18 protein si... 34 0.062
At4g19810.1 68417.m02905 glycosyl hydrolase family 18 protein si... 33 0.11
At4g19750.1 68417.m02899 glycosyl hydrolase family 18 protein si... 33 0.14
At4g19770.1 68417.m02901 glycosyl hydrolase family 18 protein si... 31 0.33
At4g19720.1 68417.m02896 glycosyl hydrolase family 18 protein si... 31 0.33
At3g16460.2 68416.m02097 jacalin lectin family protein contains ... 31 0.58
At3g16460.1 68416.m02098 jacalin lectin family protein contains ... 31 0.58
At4g19740.1 68417.m02898 glycosyl hydrolase family 18 protein si... 30 0.76
At4g34350.1 68417.m04881 LytB family protein contains Pfam profi... 28 3.1
At4g25390.2 68417.m03653 protein kinase family protein contains ... 28 4.1
At4g25390.1 68417.m03652 protein kinase family protein contains ... 28 4.1
At2g46530.2 68415.m05803 transcriptional factor B3 family protei... 27 5.4
At2g46530.1 68415.m05802 transcriptional factor B3 family protei... 27 5.4
At5g65630.1 68418.m08256 DNA-binding bromodomain-containing prot... 27 7.1
At5g57000.1 68418.m07114 expressed protein similar to unknown pr... 27 7.1
At4g20190.1 68417.m02952 hypothetical protein 27 7.1
At4g17880.1 68417.m02665 basic helix-loop-helix (bHLH) family pr... 27 7.1
At2g36730.1 68415.m04506 pentatricopeptide (PPR) repeat-containi... 27 7.1
At4g19820.1 68417.m02906 glycosyl hydrolase family 18 protein si... 27 9.4
>At4g19800.1 68417.m02904 glycosyl hydrolase family 18 protein
similar to chitinase, class V GI:899342 from [Nicotiana
tabacum]
Length = 398
Score = 35.5 bits (78), Expect = 0.020
Identities = 35/135 (25%), Positives = 52/135 (38%)
Frame = +2
Query: 2 WIQNGAPTHKLVLGISTTGRTWKLDSDSEISGVPPIHADKGGEAGPYTKVQGLLSYPEIC 181
W + G P K VLG G W L +D +++G GP G +SY ++
Sbjct: 220 WTEAGLPAKKAVLGFPYYGWAWTL-ADPDVNGY------DANTTGPAISDDGEISYRQLQ 272
Query: 182 AKLINPNQNGKRPHLRKVNDPSKRFGTYAFRLPDDXGEGGFWVSYEDPDTAGNKASYVKT 361
+++ NG KV+D G Y + G W+ Y+ + K Y K
Sbjct: 273 TWIVD---NG----ATKVHD-DMMVGDYCY-------AGTTWIGYDSEKSIVTKVIYAKQ 317
Query: 362 KNLGGVSIMDLSMDD 406
K L G + DD
Sbjct: 318 KGLLGYFSWHVGGDD 332
>At4g19730.1 68417.m02897 glycosyl hydrolase family 18 protein
similar to chitinase, class V GI:505267 from [Nicotiana
tabacum]
Length = 332
Score = 33.9 bits (74), Expect = 0.062
Identities = 32/114 (28%), Positives = 46/114 (40%)
Frame = +2
Query: 2 WIQNGAPTHKLVLGISTTGRTWKLDSDSEISGVPPIHADKGGEAGPYTKVQGLLSYPEIC 181
WI++G P K VLG S G W L +D + +G A ++ G ++Y +I
Sbjct: 235 WIKDGLPEKKAVLGFSYVGWAWTLQNDKD-TGYNAAAAGVAKSEDDVSE-DGSINYAQI- 291
Query: 182 AKLINPNQNGKRPHLRKVNDPSKRFGTYAFRLPDDXGEGGFWVSYEDPDTAGNK 343
N+ + KV DP K G Y F W+ YED + K
Sbjct: 292 ------NKFIRDEEAAKVYDP-KVVGHYCFAKK-------IWIGYEDTQSVEAK 331
>At4g19810.1 68417.m02905 glycosyl hydrolase family 18 protein
similar to chitinase/lysozyme GI:467689 from [Nicotiana
tabacum]
Length = 379
Score = 33.1 bits (72), Expect = 0.11
Identities = 35/135 (25%), Positives = 49/135 (36%)
Frame = +2
Query: 2 WIQNGAPTHKLVLGISTTGRTWKLDSDSEISGVPPIHADKGGEAGPYTKVQGLLSYPEIC 181
WIQ G P K VLG G W+L + + S P G P G + Y +I
Sbjct: 242 WIQAGLPAKKAVLGFPYYGYAWRLTNANSHSYYAP---TTGAAISP----DGSIGYGQIR 294
Query: 182 AKLINPNQNGKRPHLRKVNDPSKRFGTYAFRLPDDXGEGGFWVSYEDPDTAGNKASYVKT 361
+++ NG S G Y + G W+ Y+D + K Y K
Sbjct: 295 KFIVD---NGATTVYN-----STVVGDYCY-------AGTNWIGYDDNQSIVTKVRYAKQ 339
Query: 362 KNLGGVSIMDLSMDD 406
+ L G + DD
Sbjct: 340 RGLLGYFSWHVGADD 354
>At4g19750.1 68417.m02899 glycosyl hydrolase family 18 protein
similar to chitinase, class V GI:899342 from [Nicotiana
tabacum]
Length = 362
Score = 32.7 bits (71), Expect = 0.14
Identities = 34/125 (27%), Positives = 51/125 (40%)
Frame = +2
Query: 2 WIQNGAPTHKLVLGISTTGRTWKLDSDSEISGVPPIHADKGGEAGPYTKVQGLLSYPEIC 181
W++ P K VLG S G W L+ D+E +G G G ++Y +I
Sbjct: 231 WLEAKLPAKKAVLGFSYCGWAWTLE-DAENNGY------DAATDGAAISSDGSITYAKIR 283
Query: 182 AKLINPNQNGKRPHLRKVNDPSKRFGTYAFRLPDDXGEGGFWVSYEDPDTAGNKASYVKT 361
+I+ NG +DP+ G Y + G W+ Y+D + +K Y K
Sbjct: 284 NYIID---NG----AATFHDPAV-IGFYCY-------VGTTWIGYDDNQSIVSKVRYAKL 328
Query: 362 KNLGG 376
K L G
Sbjct: 329 KGLLG 333
>At4g19770.1 68417.m02901 glycosyl hydrolase family 18 protein
similar to chitinase, class V GI:899342 from [Nicotiana
tabacum]
Length = 261
Score = 31.5 bits (68), Expect = 0.33
Identities = 33/135 (24%), Positives = 47/135 (34%)
Frame = +2
Query: 2 WIQNGAPTHKLVLGISTTGRTWKLDSDSEISGVPPIHADKGGEAGPYTKVQGLLSYPEIC 181
WI G P K VLG G W L P H GP G +SY ++
Sbjct: 133 WIDAGLPAEKAVLGFPYYGWAWTLAD-------PKNHGYYVDTTGPAISDDGEISYSQLK 185
Query: 182 AKLINPNQNGKRPHLRKVNDPSKRFGTYAFRLPDDXGEGGFWVSYEDPDTAGNKASYVKT 361
+++ V+D + G Y + G W+ Y+ ++ K Y K
Sbjct: 186 TWIVDNKAT-------TVHD-NIVIGDYCY-------AGTTWIGYDSEESIVTKVIYAKQ 230
Query: 362 KNLGGVSIMDLSMDD 406
K L G + DD
Sbjct: 231 KGLLGYFSWQVGGDD 245
>At4g19720.1 68417.m02896 glycosyl hydrolase family 18 protein
similar to chitinase, class V GI:899342 from [Nicotiana
tabacum]
Length = 363
Score = 31.5 bits (68), Expect = 0.33
Identities = 13/29 (44%), Positives = 16/29 (55%)
Frame = +2
Query: 2 WIQNGAPTHKLVLGISTTGRTWKLDSDSE 88
WI+ G P K VLG G TW L S ++
Sbjct: 230 WIKAGLPAKKAVLGFPYVGWTWSLGSGND 258
>At3g16460.2 68416.m02097 jacalin lectin family protein contains
Pfam profile: PF01419 jacalin-like lectin domain;
similar to myrosinase binding protein [Brassica napus]
GI:1711296, GI:1655824, myrosinase-binding protein
homolog [Arabidopsis thaliana] GI:2997767; contains Pfam
profile PF01419 jacalin-like lectin family
Length = 647
Score = 30.7 bits (66), Expect = 0.58
Identities = 24/80 (30%), Positives = 33/80 (41%), Gaps = 1/80 (1%)
Frame = +2
Query: 14 GAPTHKL-VLGISTTGRTWKLDSDSEISGVPPIHADKGGEAGPYTKVQGLLSYPEICAKL 190
G+ KL G ST G +W D S+ GV I+A GGE Y K + L
Sbjct: 249 GSGAQKLEAQGNSTGGTSW--DDGSDYDGVTKIYASYGGEGIQYVKFDYVKGGVTKQGVL 306
Query: 191 INPNQNGKRPHLRKVNDPSK 250
Q+ + P +N P +
Sbjct: 307 HGKQQSRQNPREFVINHPDE 326
>At3g16460.1 68416.m02098 jacalin lectin family protein contains
Pfam profile: PF01419 jacalin-like lectin domain;
similar to myrosinase binding protein [Brassica napus]
GI:1711296, GI:1655824, myrosinase-binding protein
homolog [Arabidopsis thaliana] GI:2997767; contains Pfam
profile PF01419 jacalin-like lectin family
Length = 705
Score = 30.7 bits (66), Expect = 0.58
Identities = 24/80 (30%), Positives = 33/80 (41%), Gaps = 1/80 (1%)
Frame = +2
Query: 14 GAPTHKL-VLGISTTGRTWKLDSDSEISGVPPIHADKGGEAGPYTKVQGLLSYPEICAKL 190
G+ KL G ST G +W D S+ GV I+A GGE Y K + L
Sbjct: 249 GSGAQKLEAQGNSTGGTSW--DDGSDYDGVTKIYASYGGEGIQYVKFDYVKGGVTKQGVL 306
Query: 191 INPNQNGKRPHLRKVNDPSK 250
Q+ + P +N P +
Sbjct: 307 HGKQQSRQNPREFVINHPDE 326
>At4g19740.1 68417.m02898 glycosyl hydrolase family 18 protein
similar to chitinase, class V GI:899342 from [Nicotiana
tabacum]
Length = 289
Score = 30.3 bits (65), Expect = 0.76
Identities = 11/29 (37%), Positives = 15/29 (51%)
Frame = +2
Query: 2 WIQNGAPTHKLVLGISTTGRTWKLDSDSE 88
W++ G P K V G G +W LD D +
Sbjct: 210 WLKAGLPEKKAVFGFPYVGWSWTLDDDKD 238
>At4g34350.1 68417.m04881 LytB family protein contains Pfam profile:
PF02401 LytB protein
Length = 466
Score = 28.3 bits (60), Expect = 3.1
Identities = 17/52 (32%), Positives = 22/52 (42%)
Frame = +2
Query: 32 LVLGISTTGRTWKLDSDSEISGVPPIHADKGGEAGPYTKVQGLLSYPEICAK 187
LV+G + T L SE G+P D GP K+ L Y E+ K
Sbjct: 372 LVVGGWNSSNTSHLQEISEARGIPSYWIDSEKRIGPGNKIAYKLHYGELVEK 423
>At4g25390.2 68417.m03653 protein kinase family protein contains
protein kinase domain, Pfam:PF00069
Length = 497
Score = 27.9 bits (59), Expect = 4.1
Identities = 17/62 (27%), Positives = 30/62 (48%)
Frame = +2
Query: 194 NPNQNGKRPHLRKVNDPSKRFGTYAFRLPDDXGEGGFWVSYEDPDTAGNKASYVKTKNLG 373
N + + +RP R+ + S R T +F + G+GGF V + + G + VK + G
Sbjct: 74 NASSSPRRPSPREFSYSSLRRATGSFSQANRLGQGGFGVVFRGTISGGENVA-VKVMDSG 132
Query: 374 GV 379
+
Sbjct: 133 SL 134
>At4g25390.1 68417.m03652 protein kinase family protein contains
protein kinase domain, Pfam:PF00069
Length = 651
Score = 27.9 bits (59), Expect = 4.1
Identities = 17/62 (27%), Positives = 30/62 (48%)
Frame = +2
Query: 194 NPNQNGKRPHLRKVNDPSKRFGTYAFRLPDDXGEGGFWVSYEDPDTAGNKASYVKTKNLG 373
N + + +RP R+ + S R T +F + G+GGF V + + G + VK + G
Sbjct: 74 NASSSPRRPSPREFSYSSLRRATGSFSQANRLGQGGFGVVFRGTISGGENVA-VKVMDSG 132
Query: 374 GV 379
+
Sbjct: 133 SL 134
>At2g46530.2 68415.m05803 transcriptional factor B3 family protein /
auxin-responsive factor AUX/IAA-related contains Pfam
profiles: PF02309 AUX/IAA family, PF02362 B3 DNA binding
domain
Length = 514
Score = 27.5 bits (58), Expect = 5.4
Identities = 14/38 (36%), Positives = 23/38 (60%), Gaps = 1/38 (2%)
Frame = +3
Query: 171 QKFAPNLLTPTKTESVLIFVRSTILANVLG-PMPSAFL 281
+ F+P+ LTPT T+ RS ++ + G P+ S+FL
Sbjct: 263 EPFSPSALTPTPTQQQSKSKRSRPISEITGSPVASSFL 300
>At2g46530.1 68415.m05802 transcriptional factor B3 family protein /
auxin-responsive factor AUX/IAA-related contains Pfam
profiles: PF02309 AUX/IAA family, PF02362 B3 DNA binding
domain
Length = 601
Score = 27.5 bits (58), Expect = 5.4
Identities = 14/38 (36%), Positives = 23/38 (60%), Gaps = 1/38 (2%)
Frame = +3
Query: 171 QKFAPNLLTPTKTESVLIFVRSTILANVLG-PMPSAFL 281
+ F+P+ LTPT T+ RS ++ + G P+ S+FL
Sbjct: 350 EPFSPSALTPTPTQQQSKSKRSRPISEITGSPVASSFL 387
>At5g65630.1 68418.m08256 DNA-binding bromodomain-containing protein
similar to 5.9 kb fsh membrane protein [Drosophila
melanogaster] GI:157455; contains Pfam profile PF00439:
Bromodomain
Length = 590
Score = 27.1 bits (57), Expect = 7.1
Identities = 12/25 (48%), Positives = 15/25 (60%)
Frame = +2
Query: 194 NPNQNGKRPHLRKVNDPSKRFGTYA 268
NPN N +R + K D S FG+YA
Sbjct: 44 NPNPNFERSNSSKQCDDSSEFGSYA 68
>At5g57000.1 68418.m07114 expressed protein similar to unknown
protein (gb|AAF21159.1)
Length = 187
Score = 27.1 bits (57), Expect = 7.1
Identities = 9/15 (60%), Positives = 12/15 (80%)
Frame = -3
Query: 320 LRKKPRSHLHHXHQE 276
L++KP HLHH H+E
Sbjct: 87 LKEKPPRHLHHHHKE 101
>At4g20190.1 68417.m02952 hypothetical protein
Length = 389
Score = 27.1 bits (57), Expect = 7.1
Identities = 16/74 (21%), Positives = 28/74 (37%)
Frame = -1
Query: 385 DGHTAKVLCFHVTSFVSGRVRIFVRNPEATFTXIIRKAEGIGPKTFARIVDLTKMRTLSV 206
DG LC ++ F G+ R +++FT R ++ AR + LS
Sbjct: 208 DGFKCSALCLYLPGFSKGKPVRSSRKGDSSFT---RTTTMTSSQSMARTASIRDTAVLSA 264
Query: 205 LVGVNKFGANFWVA 164
+ +F W +
Sbjct: 265 RASLERFECGSWTS 278
>At4g17880.1 68417.m02665 basic helix-loop-helix (bHLH) family
protein bHLH protein, Arabidopsis thaliana,
PATCHX:E255557
Length = 589
Score = 27.1 bits (57), Expect = 7.1
Identities = 16/49 (32%), Positives = 23/49 (46%), Gaps = 2/49 (4%)
Frame = +2
Query: 236 NDPSKRFGTYAFRLPDDXGEG--GFWVSYEDPDTAGNKASYVKTKNLGG 376
N+ FG++AF L D GE G W+S +P+ + N GG
Sbjct: 253 NNGGGEFGSWAFNLNPDQGENDPGLWIS--EPNGVDSGLVAAPVMNNGG 299
>At2g36730.1 68415.m04506 pentatricopeptide (PPR) repeat-containing
protein contains Pfam profile PF01535: PPR repeat
Length = 501
Score = 27.1 bits (57), Expect = 7.1
Identities = 12/35 (34%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
Frame = -1
Query: 271 EGIGPKTFARIVDLTKMRTLSVLVGVNKFG-ANFW 170
EGIG K R+++L R+ ++++ N+F A W
Sbjct: 401 EGIGEKVKKRLIELEPKRSGNLVIVANRFAEARMW 435
>At4g19820.1 68417.m02906 glycosyl hydrolase family 18 protein
similar to chitinase/lysozyme GI:467689 from [Nicotiana
tabacum]
Length = 366
Score = 26.6 bits (56), Expect = 9.4
Identities = 18/59 (30%), Positives = 24/59 (40%)
Frame = +2
Query: 2 WIQNGAPTHKLVLGISTTGRTWKLDSDSEISGVPPIHADKGGEAGPYTKVQGLLSYPEI 178
W Q G P K VLG G W L +D++ H +GP G + Y +I
Sbjct: 240 WTQAGLPAKKAVLGFPLYGYAWCL-TDAK------NHNYYANSSGPAISPDGSIGYDQI 291
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,306,795
Number of Sequences: 28952
Number of extensions: 276272
Number of successful extensions: 744
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 724
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 743
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 888318720
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -