Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0006_D19
         (447 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U00047-12|AAA50685.1|  332|Caenorhabditis elegans Nuclear hormon...    29   1.2  
L12018-10|AAA65466.2|  683|Caenorhabditis elegans Dumpy : shorte...    28   3.6  
U40952-5|AAN39680.1|  137|Caenorhabditis elegans Hypothetical pr...    27   6.2  

>U00047-12|AAA50685.1|  332|Caenorhabditis elegans Nuclear hormone
           receptor familyprotein 9 protein.
          Length = 332

 Score = 29.5 bits (63), Expect = 1.2
 Identities = 15/29 (51%), Positives = 18/29 (62%), Gaps = 1/29 (3%)
 Frame = +1

Query: 361 NLTFIKSEWRYVEPNIIVEF-SKHHATSH 444
           NL+F KSEW ++E    VEF SK   T H
Sbjct: 133 NLSFSKSEWGFMEQLTTVEFMSKFEFTRH 161


>L12018-10|AAA65466.2|  683|Caenorhabditis elegans Dumpy : shorter
           than wild-typeprotein 19 protein.
          Length = 683

 Score = 27.9 bits (59), Expect = 3.6
 Identities = 12/32 (37%), Positives = 20/32 (62%)
 Frame = +3

Query: 90  RYLQVFF*VNFKPILNLHKLKREVSVFYITFK 185
           R L+V+   + KPI  +HK+ +E+ V Y  F+
Sbjct: 586 RTLKVYSMFSKKPIAEVHKIMKEMGVNYFVFQ 617


>U40952-5|AAN39680.1|  137|Caenorhabditis elegans Hypothetical
           protein C03B1.15 protein.
          Length = 137

 Score = 27.1 bits (57), Expect = 6.2
 Identities = 14/30 (46%), Positives = 20/30 (66%)
 Frame = +1

Query: 211 SLKFERCGLIAKQIVLTYFEDHLAPDFEPD 300
           S KFER  ++A   V+T ++   AP+FEPD
Sbjct: 92  SPKFER--ILAAIRVVTEYDGDAAPEFEPD 119


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,321,704
Number of Sequences: 27780
Number of extensions: 142045
Number of successful extensions: 201
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 200
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 201
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 777938954
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)