Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0006_D18
(227 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_05_1170 + 34663853-34663928,34664038-34664078,34664317-346643... 37 0.003
07_03_0593 + 19808148-19808310,19809416-19809531,19810129-198102... 36 0.003
10_03_0010 + 7007694-7007888,7007994-7008059,7008161-7008334,700... 28 0.93
10_07_0080 - 12704866-12705224,12705389-12705512,12705905-127060... 26 4.9
02_01_0139 - 1008675-1008752,1008828-1008905,1009176-1009227,100... 26 4.9
04_04_1091 - 30798420-30798584,30798870-30799045,30799127-307992... 25 6.5
11_01_0110 + 850780-850805,851465-851537,851558-851720,851947-85... 25 8.6
09_06_0063 - 20619616-20619999,20620514-20620576,20620776-20620778 25 8.6
07_03_1012 + 23295976-23296264,23296475-23296548,23296972-232969... 25 8.6
03_06_0701 - 35620559-35620777,35620872-35620949,35621038-356211... 25 8.6
>02_05_1170 + 34663853-34663928,34664038-34664078,34664317-34664386,
34664499-34664647,34664784-34664879,34665406-34665476,
34665637-34665698,34665778-34665841,34665950-34666034,
34666129-34666255,34666381-34666454,34666539-34666599,
34666683-34666771,34666897-34667206,34667763-34667815,
34668299-34668370,34668648-34668914,34669015-34669047,
34669163-34669245,34669522-34669594,34669834-34670170,
34670302-34670633,34670816-34671135,34671261-34671612,
34671691-34671906
Length = 1170
Score = 36.7 bits (81), Expect = 0.003
Identities = 19/44 (43%), Positives = 26/44 (59%), Gaps = 1/44 (2%)
Frame = +2
Query: 98 VGPYSQAILSDKTLYISGVLGMDRDA-QLVSGGVGAQTRQVLEN 226
+GPYSQA L + LY++G LG+D +L GG A+ L N
Sbjct: 870 IGPYSQATLHGEILYMAGQLGLDPPTMKLCPGGPTAELEFALRN 913
>07_03_0593 +
19808148-19808310,19809416-19809531,19810129-19810202,
19810286-19810335,19810498-19810592
Length = 165
Score = 36.3 bits (80), Expect = 0.003
Identities = 21/59 (35%), Positives = 35/59 (59%)
Frame = +2
Query: 20 MSSTDSTANAHRVVKTIVTSPDVYKPVGPYSQAILSDKTLYISGVLGMDRDAQLVSGGV 196
+S++ STA A V K V + +GPYSQAI ++ +++SGVLG++ + G +
Sbjct: 44 VSASLSTAAA-AVKKEAVQTEKAPAALGPYSQAIKANNMVFVSGVLGLNPEVMKNMGEI 101
>10_03_0010 +
7007694-7007888,7007994-7008059,7008161-7008334,
7009232-7009306,7009384-7009510,7012280-7012371,
7012496-7012566,7012683-7012792,7013016-7013053,
7013825-7013960,7014382-7014456,7014574-7014697,
7014917-7015013,7015426-7015451,7016180-7016255,
7016499-7016636,7016735-7016872
Length = 585
Score = 28.3 bits (60), Expect = 0.93
Identities = 13/36 (36%), Positives = 19/36 (52%)
Frame = -1
Query: 167 DPCRVLPIYRESCQIKWLDCRVQPVYRHLGMLQWSS 60
DPCR L + +ES Q W++ + Y+ LG S
Sbjct: 435 DPCRFLEVIKESMQSLWIE--IVKKYQKLGFCSTKS 468
>10_07_0080 -
12704866-12705224,12705389-12705512,12705905-12706041,
12707971-12708106,12710346-12710759
Length = 389
Score = 25.8 bits (54), Expect = 4.9
Identities = 13/33 (39%), Positives = 18/33 (54%), Gaps = 1/33 (3%)
Frame = +3
Query: 39 QQMLTEW*RPL*HPQMSINR-LDPTVKPFYLTR 134
+Q L EW RP H +NR +D ++ Y TR
Sbjct: 304 EQNLVEWARPCLHDSRRLNRVIDKSLNGQYSTR 336
>02_01_0139 -
1008675-1008752,1008828-1008905,1009176-1009227,
1009369-1009437,1009594-1009652,1009757-1009828,
1009945-1010038,1010311-1010356,1010510-1010609,
1010847-1011200,1011362-1011460,1011548-1011595,
1011679-1011816
Length = 428
Score = 25.8 bits (54), Expect = 4.9
Identities = 11/29 (37%), Positives = 18/29 (62%)
Frame = -2
Query: 217 NLARLCSHSTRYQLRITIHAEYSRYIESL 131
+L C+HS Q R + +E +RY+E+L
Sbjct: 34 SLLSSCAHSDLLQAREEVASERARYLEAL 62
>04_04_1091 -
30798420-30798584,30798870-30799045,30799127-30799216,
30799673-30799742,30800598-30800697,30800922-30801001,
30801347-30801412,30801489-30801597,30801862-30801905,
30802171-30802242,30803198-30803311,30804342-30804398
Length = 380
Score = 25.4 bits (53), Expect = 6.5
Identities = 13/29 (44%), Positives = 14/29 (48%)
Frame = +2
Query: 140 YISGVLGMDRDAQLVSGGVGAQTRQVLEN 226
YISGV G+D S VG LEN
Sbjct: 137 YISGVKGLDSSGLSSSAAVGIAYLMALEN 165
>11_01_0110 +
850780-850805,851465-851537,851558-851720,851947-852260,
852330-852409,852506-852848,853068-853166,853240-853360,
853567-853723,853976-854099,855275-855368,855866-857259,
857882-857924,858240-858458,859379-859605,859701-859948,
860246-860552,860725-861153
Length = 1486
Score = 25.0 bits (52), Expect = 8.6
Identities = 13/29 (44%), Positives = 15/29 (51%), Gaps = 1/29 (3%)
Frame = -3
Query: 225 FSKTWRVCAPTPPDTNCASRSMP-STPDI 142
FS++ R C P P AS P S PDI
Sbjct: 65 FSRSLRPCRPNGPPPAFASAEFPGSVPDI 93
>09_06_0063 - 20619616-20619999,20620514-20620576,20620776-20620778
Length = 149
Score = 25.0 bits (52), Expect = 8.6
Identities = 10/25 (40%), Positives = 17/25 (68%)
Frame = +3
Query: 81 QMSINRLDPTVKPFYLTRLSIYREY 155
+MSI+ PTV +++ RL+I+ Y
Sbjct: 16 RMSISTTFPTVLQYFMDRLAIFAPY 40
>07_03_1012 +
23295976-23296264,23296475-23296548,23296972-23296996,
23297486-23297568,23297653-23297685,23298322-23298469,
23298625-23298722
Length = 249
Score = 25.0 bits (52), Expect = 8.6
Identities = 11/27 (40%), Positives = 17/27 (62%), Gaps = 1/27 (3%)
Frame = +2
Query: 59 VKTIVTSPDVYKPVGP-YSQAILSDKT 136
+K I+T+PD Y P+ P L+D+T
Sbjct: 208 IKAIITNPDPYCPLVPSIGHLYLTDRT 234
>03_06_0701 -
35620559-35620777,35620872-35620949,35621038-35621191,
35621279-35621391,35621487-35621586,35622193-35622389,
35622470-35622526,35622630-35622734,35622824-35622931,
35623651-35623848,35624022-35624024
Length = 443
Score = 25.0 bits (52), Expect = 8.6
Identities = 8/32 (25%), Positives = 19/32 (59%)
Frame = -1
Query: 224 FLKLGASVLPLHQIPTAHHDPCRVLPIYRESC 129
+L++ +++IP+ DP + +P+ R+ C
Sbjct: 231 YLEICRCYKSIYEIPSIKEDPSKWIPVLRKIC 262
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,153,601
Number of Sequences: 37544
Number of extensions: 136911
Number of successful extensions: 365
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 363
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 365
length of database: 14,793,348
effective HSP length: 54
effective length of database: 12,765,972
effective search space used: 268085412
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -