Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0006_D18
         (227 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_54471| Best HMM Match : PHD (HMM E-Value=4.9e-08)                   30   0.26 
SB_26471| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   1.8  
SB_11615| Best HMM Match : EGF (HMM E-Value=0.076)                     27   3.2  
SB_47411| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   4.2  
SB_9655| Best HMM Match : VWA (HMM E-Value=0.00019)                    26   5.5  
SB_56570| Best HMM Match : No HMM Matches (HMM E-Value=.)              25   7.3  
SB_46123| Best HMM Match : No HMM Matches (HMM E-Value=.)              25   7.3  
SB_8283| Best HMM Match : Aerolysin (HMM E-Value=2.5e-05)              25   7.3  
SB_42005| Best HMM Match : Myosin_head (HMM E-Value=0)                 25   9.7  

>SB_54471| Best HMM Match : PHD (HMM E-Value=4.9e-08)
          Length = 352

 Score = 30.3 bits (65), Expect = 0.26
 Identities = 12/33 (36%), Positives = 18/33 (54%)
 Frame = -1

Query: 137 ESCQIKWLDCRVQPVYRHLGMLQWSSPLCEHLL 39
           +SC+I+WL      + +  G  +W  P CE LL
Sbjct: 316 QSCEIEWLHIECDGLRQVPGEDEWICPFCEELL 348


>SB_26471| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 566

 Score = 27.5 bits (58), Expect = 1.8
 Identities = 8/15 (53%), Positives = 13/15 (86%)
 Frame = +3

Query: 144 YREYSAWIVMRSWYL 188
           Y E+S+W+V R+W+L
Sbjct: 342 YGEFSSWLVWRTWFL 356


>SB_11615| Best HMM Match : EGF (HMM E-Value=0.076)
          Length = 262

 Score = 26.6 bits (56), Expect = 3.2
 Identities = 13/45 (28%), Positives = 21/45 (46%)
 Frame = +2

Query: 59  VKTIVTSPDVYKPVGPYSQAILSDKTLYISGVLGMDRDAQLVSGG 193
           +K+  T+P V  P    S  + SD   YI  V+    ++  + GG
Sbjct: 53  LKSSSTNPSVTSPFNNLSPQLTSDNKSYIFCVMNNGNESSFLDGG 97


>SB_47411| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 425

 Score = 26.2 bits (55), Expect = 4.2
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = -1

Query: 206 SVLPLHQIPTAHHDPCRVLPIYRESC 129
           S +P+ +    HH  CRVL   R+SC
Sbjct: 55  SGIPVVEASVCHHIICRVLGSIRDSC 80


>SB_9655| Best HMM Match : VWA (HMM E-Value=0.00019)
          Length = 283

 Score = 25.8 bits (54), Expect = 5.5
 Identities = 15/49 (30%), Positives = 24/49 (48%), Gaps = 2/49 (4%)
 Frame = +2

Query: 59  VKTIVTSPDVYKPVGPYSQAI--LSDKTLYISGVLGMDRDAQLVSGGVG 199
           V  ++T     +   PYS  +  L  + LY   V   D+D ++V+ GVG
Sbjct: 190 VLVVITDGKTNQRSEPYSSVLQPLKVRILYPRDVTEQDKDVKIVAVGVG 238


>SB_56570| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 617

 Score = 25.4 bits (53), Expect = 7.3
 Identities = 15/38 (39%), Positives = 18/38 (47%)
 Frame = +2

Query: 23  SSTDSTANAHRVVKTIVTSPDVYKPVGPYSQAILSDKT 136
           + TDSTAN  +   T VTS    KP       I+  KT
Sbjct: 373 TQTDSTANTQKYTST-VTSTKTLKPFTAAQYRIMLTKT 409


>SB_46123| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 771

 Score = 25.4 bits (53), Expect = 7.3
 Identities = 17/71 (23%), Positives = 33/71 (46%), Gaps = 3/71 (4%)
 Frame = +2

Query: 23  SSTDSTANAHRVVKTIVTSPDVYKPVGPYSQAILSD---KTLYISGVLGMDRDAQLVSGG 193
           S +  ++    V  +   S  +  P  PYS A++SD    + +   V  ++ +  LV GG
Sbjct: 395 SKSQDSSPPQSVFSSPKPSSVISTPTTPYSPAVMSDGVPSSRWGHAVCAINENEALVVGG 454

Query: 194 VGAQTRQVLEN 226
            G + + V ++
Sbjct: 455 QGPKFQMVKDS 465


>SB_8283| Best HMM Match : Aerolysin (HMM E-Value=2.5e-05)
          Length = 547

 Score = 25.4 bits (53), Expect = 7.3
 Identities = 15/38 (39%), Positives = 18/38 (47%)
 Frame = +2

Query: 23  SSTDSTANAHRVVKTIVTSPDVYKPVGPYSQAILSDKT 136
           + TDSTAN  +   T VTS    KP       I+  KT
Sbjct: 303 TQTDSTANTQKYTST-VTSTKTLKPFTAAQYRIMLTKT 339


>SB_42005| Best HMM Match : Myosin_head (HMM E-Value=0)
          Length = 621

 Score = 25.0 bits (52), Expect = 9.7
 Identities = 12/35 (34%), Positives = 19/35 (54%)
 Frame = +2

Query: 122 LSDKTLYISGVLGMDRDAQLVSGGVGAQTRQVLEN 226
           ++D    I+G+L +   A L +GG     + VLEN
Sbjct: 245 INDLLQVIAGILQLGNVAFLAAGGAQVADKNVLEN 279


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,274,042
Number of Sequences: 59808
Number of extensions: 164200
Number of successful extensions: 391
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 373
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 391
length of database: 16,821,457
effective HSP length: 53
effective length of database: 13,651,633
effective search space used: 300335926
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)