Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0006_D18
(227 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g20390.1 68416.m02583 endoribonuclease L-PSP family protein c... 46 3e-06
At3g04480.1 68416.m00475 endoribonuclease L-PSP family protein c... 35 0.008
At2g43000.1 68415.m05336 no apical meristem (NAM) family protein... 31 0.14
At5g56790.1 68418.m07087 protein kinase family protein contains ... 27 1.7
At1g14800.1 68414.m01769 hypothetical protein 25 5.1
At5g64690.1 68418.m08131 neurofilament triplet H protein-related... 25 6.8
At5g61670.2 68418.m07738 expressed protein 25 6.8
At5g61670.1 68418.m07737 expressed protein 25 6.8
At5g02500.1 68418.m00183 heat shock cognate 70 kDa protein 1 (HS... 25 6.8
At2g44090.1 68415.m05483 expressed protein 25 6.8
At1g17220.1 68414.m02098 translation initiation factor IF-2, chl... 25 6.8
At3g63220.2 68416.m07103 kelch repeat-containing F-box family pr... 25 8.9
At3g63220.1 68416.m07102 kelch repeat-containing F-box family pr... 25 8.9
At3g30430.1 68416.m03848 F-box family protein ; similar to SKP... 25 8.9
At3g10840.1 68416.m01305 hydrolase, alpha/beta fold family prote... 25 8.9
>At3g20390.1 68416.m02583 endoribonuclease L-PSP family protein
contains Pfam domain PF01042: Endoribonuclease L-PSP
Length = 187
Score = 46.4 bits (105), Expect = 3e-06
Identities = 25/64 (39%), Positives = 39/64 (60%), Gaps = 1/64 (1%)
Frame = +2
Query: 38 TANAHRVVKTIVTSPDVYKPVGPYSQAILSDKTLYISGVLGM-DRDAQLVSGGVGAQTRQ 214
+ +A V K +V++ +GPYSQAI ++ +++SGVLG+ + VS V QT Q
Sbjct: 56 SVSASSVKKEVVSTEKAPAALGPYSQAIKANNLVFLSGVLGLIPETGKFVSESVEDQTEQ 115
Query: 215 VLEN 226
VL+N
Sbjct: 116 VLKN 119
>At3g04480.1 68416.m00475 endoribonuclease L-PSP family protein
contains Pfam domain PF01902: Domain of unknown function
Length = 715
Score = 34.7 bits (76), Expect = 0.008
Identities = 18/44 (40%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
Frame = +2
Query: 98 VGPYSQAILSDKTLYISGVLGMDRDA-QLVSGGVGAQTRQVLEN 226
+GPYSQA L L+++G LG+D L + G A+ Q L N
Sbjct: 425 IGPYSQATLHQSVLHMAGQLGLDPPTMNLQTEGAIAELNQALTN 468
>At2g43000.1 68415.m05336 no apical meristem (NAM) family protein
contains Pfam PF02365: No apical meristem (NAM) domain;
Length = 275
Score = 30.7 bits (66), Expect = 0.14
Identities = 14/35 (40%), Positives = 19/35 (54%)
Frame = +2
Query: 5 DVLSKMSSTDSTANAHRVVKTIVTSPDVYKPVGPY 109
D SK SS DS +HR V ++ P + +P PY
Sbjct: 189 DTCSKTSSLDSDHTSHRTVDSMSHEPPLPQPQNPY 223
>At5g56790.1 68418.m07087 protein kinase family protein contains
protein kinase domain, Pfam:PF00069
Length = 669
Score = 27.1 bits (57), Expect = 1.7
Identities = 14/29 (48%), Positives = 15/29 (51%)
Frame = +3
Query: 39 QQMLTEW*RPL*HPQMSINRLDPTVKPFY 125
QQ LTEW RPL Q LDP + Y
Sbjct: 599 QQCLTEWARPLLQKQAINELLDPRLMNCY 627
>At1g14800.1 68414.m01769 hypothetical protein
Length = 384
Score = 25.4 bits (53), Expect = 5.1
Identities = 14/42 (33%), Positives = 22/42 (52%)
Frame = +2
Query: 14 SKMSSTDSTANAHRVVKTIVTSPDVYKPVGPYSQAILSDKTL 139
S ++S AN RV+KT+ +P V KP+ ++ K L
Sbjct: 261 SNINSYSLKANDERVLKTLNLAPLVKKPLSCRKHHLIMKKCL 302
>At5g64690.1 68418.m08131 neurofilament triplet H protein-related
contains weak similarity to neurofilament triplet H
protein (200 kDa neurofilament protein) (Neurofilament
heavy polypeptide) (NF-H) (Swiss-Prot:P12036) [Homo
sapiens]
Length = 344
Score = 25.0 bits (52), Expect = 6.8
Identities = 13/46 (28%), Positives = 18/46 (39%)
Frame = +2
Query: 11 LSKMSSTDSTANAHRVVKTIVTSPDVYKPVGPYSQAILSDKTLYIS 148
LS + D T V T PD GP S+ + D T ++
Sbjct: 79 LSHLFHEDKTVVEKEVTDLTPTKPDTNNKTGPSSEVSMFDTTALVA 124
>At5g61670.2 68418.m07738 expressed protein
Length = 307
Score = 25.0 bits (52), Expect = 6.8
Identities = 12/27 (44%), Positives = 15/27 (55%)
Frame = +1
Query: 40 SKCSQSGEDHCNIPRCL*TGWTLQSSH 120
S CS +G+ C P CL TG + S H
Sbjct: 275 SNCSGAGKVMC--PTCLCTGMAMASEH 299
>At5g61670.1 68418.m07737 expressed protein
Length = 307
Score = 25.0 bits (52), Expect = 6.8
Identities = 12/27 (44%), Positives = 15/27 (55%)
Frame = +1
Query: 40 SKCSQSGEDHCNIPRCL*TGWTLQSSH 120
S CS +G+ C P CL TG + S H
Sbjct: 275 SNCSGAGKVMC--PTCLCTGMAMASEH 299
>At5g02500.1 68418.m00183 heat shock cognate 70 kDa protein 1
(HSC70-1) (HSP70-1) identical to SP|P22953 Heat shock
cognate 70 kDa protein 1 (Hsc70.1) {Arabidopsis
thaliana}
Length = 651
Score = 25.0 bits (52), Expect = 6.8
Identities = 11/23 (47%), Positives = 13/23 (56%)
Frame = +2
Query: 149 GVLGMDRDAQLVSGGVGAQTRQV 217
G GMD DA SGG G + +V
Sbjct: 628 GASGMDDDAPPASGGAGPKIEEV 650
>At2g44090.1 68415.m05483 expressed protein
Length = 582
Score = 25.0 bits (52), Expect = 6.8
Identities = 11/29 (37%), Positives = 15/29 (51%)
Frame = -1
Query: 221 LKLGASVLPLHQIPTAHHDPCRVLPIYRE 135
LKLG S + L +P +P+YRE
Sbjct: 495 LKLGESAISLKDLPAPLRVAIAYMPLYRE 523
>At1g17220.1 68414.m02098 translation initiation factor IF-2,
chloroplast, putative similar to SP|P57997|IF2C_PHAVU
Translation initiation factor IF-2, chloroplast
precursor (PvIF2cp) {Phaseolus vulgaris}
Length = 1026
Score = 25.0 bits (52), Expect = 6.8
Identities = 13/33 (39%), Positives = 17/33 (51%)
Frame = +2
Query: 41 ANAHRVVKTIVTSPDVYKPVGPYSQAILSDKTL 139
AN HR K IV + K GP++ I+ TL
Sbjct: 673 ANPHRNAKGIVIEAGLDKAKGPFATFIVQKGTL 705
>At3g63220.2 68416.m07103 kelch repeat-containing F-box family
protein contains Pfam profiles PF01344: Kelch motif,
PF00646: F-box domain
Length = 352
Score = 24.6 bits (51), Expect = 8.9
Identities = 11/36 (30%), Positives = 21/36 (58%)
Frame = +2
Query: 62 KTIVTSPDVYKPVGPYSQAILSDKTLYISGVLGMDR 169
K + ++ + + +G + LSD+ L + GV+G DR
Sbjct: 274 KMVASASEFKRRIG-MAMTSLSDEVLIVGGVIGPDR 308
>At3g63220.1 68416.m07102 kelch repeat-containing F-box family
protein contains Pfam profiles PF01344: Kelch motif,
PF00646: F-box domain
Length = 345
Score = 24.6 bits (51), Expect = 8.9
Identities = 11/36 (30%), Positives = 21/36 (58%)
Frame = +2
Query: 62 KTIVTSPDVYKPVGPYSQAILSDKTLYISGVLGMDR 169
K + ++ + + +G + LSD+ L + GV+G DR
Sbjct: 267 KMVASASEFKRRIG-MAMTSLSDEVLIVGGVIGPDR 301
>At3g30430.1 68416.m03848 F-box family protein ; similar to SKP1
interacting partner 2 (SKIP2) TIGR_Ath1:At5g67250
Length = 114
Score = 24.6 bits (51), Expect = 8.9
Identities = 12/35 (34%), Positives = 20/35 (57%)
Frame = +2
Query: 35 STANAHRVVKTIVTSPDVYKPVGPYSQAILSDKTL 139
++AN RV+KT+ +P V KP+ ++ K L
Sbjct: 46 ASANDERVLKTLNLAPLVKKPLSCRKHLLIMKKCL 80
>At3g10840.1 68416.m01305 hydrolase, alpha/beta fold family protein
low similarity to hydrolase [Terrabacter sp. DBF63]
GI:14196240; contains Pfam profile: PF00561 alpha/beta
hydrolase fold
Length = 466
Score = 24.6 bits (51), Expect = 8.9
Identities = 15/36 (41%), Positives = 17/36 (47%)
Frame = +2
Query: 92 KPVGPYSQAILSDKTLYISGVLGMDRDAQLVSGGVG 199
KP+ PYS TLY VL D+ A LV G
Sbjct: 187 KPLNPYSMVYSVLTTLYFIDVLAADK-AILVGHSAG 221
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,645,094
Number of Sequences: 28952
Number of extensions: 106697
Number of successful extensions: 306
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 304
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 306
length of database: 12,070,560
effective HSP length: 55
effective length of database: 10,478,200
effective search space used: 209564000
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -