Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0006_D17
         (323 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr 1...    32   0.025
SPBC1105.08 |||EMP70 family|Schizosaccharomyces pombe|chr 2|||Ma...    28   0.40 
SPCC1235.02 |bio2|SPCC320.01c|biotin synthase|Schizosaccharomyce...    27   0.70 
SPBP4H10.09 |rsv1||transcription factor Rsv1 |Schizosaccharomyce...    25   2.1  
SPBC83.18c |||C2 domain protein|Schizosaccharomyces pombe|chr 2|...    25   2.1  
SPAC821.08c |slp1||sleepy homolog Slp1|Schizosaccharomyces pombe...    25   2.1  
SPBC216.07c |tor2|SPBC646.01c|phosphatidylinositol kinase Tor2|S...    25   2.8  
SPBC32H8.09 |||WD repeat protein, human WDR8 family|Schizosaccha...    24   6.5  
SPAC25A8.02 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    24   6.5  
SPAC144.14 |klp8||kinesin-like protein Klp8|Schizosaccharomyces ...    24   6.5  
SPBC1778.03c |||NADH pyrophosphatase |Schizosaccharomyces pombe|...    23   8.6  
SPAC20G8.06 |||CCR4-Not complex subunit Not1 |Schizosaccharomyce...    23   8.6  
SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31 |Schizo...    23   8.6  

>SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 857

 Score = 31.9 bits (69), Expect = 0.025
 Identities = 12/30 (40%), Positives = 18/30 (60%)
 Frame = -1

Query: 92  PLIPIAPCPPGLPSKPRSPLSPFWPMIPGI 3
           P  P+AP  P +PS P+ P++P  P  P +
Sbjct: 575 PQPPVAPVAPEVPSVPQPPVAPVVPEAPSV 604



 Score = 31.5 bits (68), Expect = 0.033
 Identities = 13/34 (38%), Positives = 18/34 (52%)
 Frame = -1

Query: 104 SPFSPLIPIAPCPPGLPSKPRSPLSPFWPMIPGI 3
           +P  P  P+AP  P +PS P+ P  P  P  P +
Sbjct: 601 APSVPQPPVAPVAPEVPSVPQRPAVPVVPEAPSV 634


>SPBC1105.08 |||EMP70 family|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 629

 Score = 27.9 bits (59), Expect = 0.40
 Identities = 14/45 (31%), Positives = 19/45 (42%), Gaps = 1/45 (2%)
 Frame = -3

Query: 225 SRNTAWSWFSFLTIDDCCRFTFITFV-AWFXXXXXXXXXXSIAFF 94
           S N  W W SF+T   C  + FI  V  WF          ++ +F
Sbjct: 549 SENYNWWWRSFITPGFCGIYVFIFSVFYWFFKISSSSLATAVLYF 593


>SPCC1235.02 |bio2|SPCC320.01c|biotin synthase|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 363

 Score = 27.1 bits (57), Expect = 0.70
 Identities = 12/26 (46%), Positives = 15/26 (57%)
 Frame = -1

Query: 101 PFSPLIPIAPCPPGLPSKPRSPLSPF 24
           PF+ L+PI   P G   K R P+ PF
Sbjct: 238 PFNLLVPIPGTPVGDAVKERLPIHPF 263


>SPBP4H10.09 |rsv1||transcription factor Rsv1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 428

 Score = 25.4 bits (53), Expect = 2.1
 Identities = 12/29 (41%), Positives = 15/29 (51%), Gaps = 3/29 (10%)
 Frame = -1

Query: 86  IPIAPCPPGLPSKPRSPLSP---FWPMIP 9
           +P  P   G+P  P  P+SP   F PM P
Sbjct: 295 LPFYPFDSGIPVSPNIPVSPSSSFVPMYP 323


>SPBC83.18c |||C2 domain protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 272

 Score = 25.4 bits (53), Expect = 2.1
 Identities = 12/33 (36%), Positives = 17/33 (51%), Gaps = 2/33 (6%)
 Frame = -1

Query: 101 PFSPLIPIAPCP--PGLPSKPRSPLSPFWPMIP 9
           P+S +  + P P  P  PSKPR  +    P+ P
Sbjct: 145 PYSSVAALTPVPKKPSKPSKPRKKVPVSHPLPP 177


>SPAC821.08c |slp1||sleepy homolog Slp1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 488

 Score = 25.4 bits (53), Expect = 2.1
 Identities = 10/33 (30%), Positives = 17/33 (51%), Gaps = 2/33 (6%)
 Frame = +3

Query: 180 RLWSKRRT--RTTRCSWNRWSSRVRWCPWCSRI 272
           ++W  R +  + T+ + N     V WCPW S +
Sbjct: 329 QIWDARSSIPKFTKTNHNAAVKAVAWCPWQSNL 361


>SPBC216.07c |tor2|SPBC646.01c|phosphatidylinositol kinase
            Tor2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2337

 Score = 25.0 bits (52), Expect = 2.8
 Identities = 10/30 (33%), Positives = 21/30 (70%)
 Frame = -2

Query: 217  HRVVLVLLFDHRRLLQVHLYHLCSLVHQLN 128
            H V+ +L  ++  L++V +  +C+L++QLN
Sbjct: 1013 HPVMRMLSCNNASLIRVSMDTVCALIYQLN 1042


>SPBC32H8.09 |||WD repeat protein, human WDR8
           family|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 483

 Score = 23.8 bits (49), Expect = 6.5
 Identities = 9/22 (40%), Positives = 12/22 (54%)
 Frame = -3

Query: 270 SWSTRGTI*PWKTIYSRNTAWS 205
           SWS  G +  W +  S+ T WS
Sbjct: 107 SWSPSGELLLWSSFDSKITVWS 128


>SPAC25A8.02 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 390

 Score = 23.8 bits (49), Expect = 6.5
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = -1

Query: 86  IPIAPCPPGLPSKPRSPLSPF 24
           IP+ PCP  LPS  + P++ F
Sbjct: 271 IPL-PCPLQLPSPDQKPMTSF 290


>SPAC144.14 |klp8||kinesin-like protein Klp8|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 511

 Score = 23.8 bits (49), Expect = 6.5
 Identities = 10/22 (45%), Positives = 12/22 (54%)
 Frame = +1

Query: 178 VVYGQKGEPGPRGVPGIDGLPG 243
           + YGQKG      V G+ G PG
Sbjct: 104 ITYGQKGTGKTYSVVGLRGQPG 125


>SPBC1778.03c |||NADH pyrophosphatase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 376

 Score = 23.4 bits (48), Expect = 8.6
 Identities = 7/13 (53%), Positives = 9/13 (69%)
 Frame = +3

Query: 231 WSSRVRWCPWCSR 269
           W SR R+CP C +
Sbjct: 175 WISRYRFCPGCGK 187


>SPAC20G8.06 |||CCR4-Not complex subunit Not1 |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 2100

 Score = 23.4 bits (48), Expect = 8.6
 Identities = 10/21 (47%), Positives = 12/21 (57%)
 Frame = -2

Query: 214  RVVLVLLFDHRRLLQVHLYHL 152
            R++LVLL D    L  H Y L
Sbjct: 1816 RIILVLLHDFPGFLATHCYQL 1836


>SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1224

 Score = 23.4 bits (48), Expect = 8.6
 Identities = 7/17 (41%), Positives = 9/17 (52%)
 Frame = +3

Query: 258 WCSRIEWCPRNERRPRV 308
           W ++  WCP N  R  V
Sbjct: 305 WYTKSSWCPSNSNRVAV 321


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.311    0.149    0.465 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,310,444
Number of Sequences: 5004
Number of extensions: 24557
Number of successful extensions: 69
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 64
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 69
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 87815546
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.6 bits)