Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0006_D16
(547 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_29525| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.27
SB_20225| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.61
SB_43557| Best HMM Match : Pentapeptide (HMM E-Value=8.1e-11) 29 1.9
SB_34310| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 1.9
SB_39038| Best HMM Match : BEX (HMM E-Value=3) 29 2.5
SB_32707| Best HMM Match : Peptidase_A17 (HMM E-Value=4.8e-22) 29 2.5
SB_43460| Best HMM Match : Keratin_B2 (HMM E-Value=0.68) 29 3.3
SB_1853| Best HMM Match : RVT_1 (HMM E-Value=5.99994e-41) 27 7.6
>SB_29525| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 511
Score = 32.3 bits (70), Expect = 0.27
Identities = 18/63 (28%), Positives = 28/63 (44%)
Frame = +3
Query: 345 ALDFYQTALRDPAFYQLYNRIVGYINAFKHYLKPYPQEKLHFVGVQINDVVVEKLVTFFD 524
AL + ALR P ++Y + ++ FK LK YP H + + L+ + D
Sbjct: 180 ALRYVLDALRKPYGSKMYMFGIAALDRFKTRLKDYPHYCQHLASIPHFKEFPQSLIEYID 239
Query: 525 YSQ 533
Y Q
Sbjct: 240 YGQ 242
>SB_20225| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1548
Score = 31.1 bits (67), Expect = 0.61
Identities = 13/31 (41%), Positives = 21/31 (67%)
Frame = +1
Query: 286 LAMCSVQHLNHSTSTPSCPVRLTFTKPHFET 378
L+ CS+Q L +T T P+R++F++PH T
Sbjct: 1421 LSTCSLQSLTDNT-TSERPIRISFSEPHLHT 1450
>SB_43557| Best HMM Match : Pentapeptide (HMM E-Value=8.1e-11)
Length = 129
Score = 29.5 bits (63), Expect = 1.9
Identities = 21/71 (29%), Positives = 32/71 (45%)
Frame = +1
Query: 307 HLNHSTSTPSCPVRLTFTKPHFETLHSISYITGLWVTLTHSSIT*SLILKRNFISSAFKS 486
+L HST T S L T T +++++T + TLTH +IT S I
Sbjct: 26 NLTHSTLTHSNLTHLNLTHSTL-TYSTLTHLTLTYSTLTHLTITYSTITHSTLTHLTLTH 84
Query: 487 MMLSLRN*SHS 519
+ L+ +HS
Sbjct: 85 LTLTYSTLTHS 95
Score = 28.3 bits (60), Expect = 4.3
Identities = 26/84 (30%), Positives = 38/84 (45%), Gaps = 2/84 (2%)
Frame = +1
Query: 271 LMKLSLAMCSVQHLN--HSTSTPSCPVRLTFTKPHFETLHSISYITGLWVTLTHSSIT*S 444
L L+L ++ HL +ST T S LT T H +++Y T TLTHS++T S
Sbjct: 52 LTHLTLTYSTLTHLTITYSTITHSTLTHLTLT--HL----TLTYSTLTHSTLTHSTLTHS 105
Query: 445 LILKRNFISSAFKSMMLSLRN*SH 516
+ S L+ N +H
Sbjct: 106 TLTHSTLTHSTITHSTLTHSNLTH 129
Score = 27.5 bits (58), Expect = 7.6
Identities = 22/86 (25%), Positives = 38/86 (44%), Gaps = 4/86 (4%)
Frame = +1
Query: 274 MKLSLAMCSVQHLNHSTSTPSCPVRLTFTKP---HFETLH-SISYITGLWVTLTHSSIT* 441
+ L+ + + L H T T S LT T H H +++++T + TLTHS++T
Sbjct: 40 LNLTHSTLTYSTLTHLTLTYSTLTHLTITYSTITHSTLTHLTLTHLTLTYSTLTHSTLTH 99
Query: 442 SLILKRNFISSAFKSMMLSLRN*SHS 519
S + S ++ +HS
Sbjct: 100 STLTHSTLTHSTLTHSTITHSTLTHS 125
>SB_34310| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1103
Score = 29.5 bits (63), Expect = 1.9
Identities = 18/45 (40%), Positives = 19/45 (42%), Gaps = 1/45 (2%)
Frame = -2
Query: 192 PFHRGNQFSCHTIRICLSVGTVRKSFQKCPRTVLL-RSSLRCVGC 61
P H NQ C IC+ G KS KCP L S RC C
Sbjct: 245 PCHEANQGGCEGRAICVYTGP-GKSICKCPPGYKLDESQARCTLC 288
>SB_39038| Best HMM Match : BEX (HMM E-Value=3)
Length = 349
Score = 29.1 bits (62), Expect = 2.5
Identities = 16/45 (35%), Positives = 27/45 (60%)
Frame = -2
Query: 135 GTVRKSFQKCPRTVLLRSSLRCVGCSCPAFERMGNSMKSSGDSNQ 1
GT S++ C R +++R + R G S A+ER+G+S SS + +
Sbjct: 273 GTRTSSWRLCTRFLMVRVTAR--GRSLRAYERLGSSSGSSEEEEE 315
>SB_32707| Best HMM Match : Peptidase_A17 (HMM E-Value=4.8e-22)
Length = 2269
Score = 29.1 bits (62), Expect = 2.5
Identities = 18/51 (35%), Positives = 29/51 (56%), Gaps = 7/51 (13%)
Frame = +3
Query: 135 LQKGKFE-----SYGKKIDFHDEKAINFVGNYWQENADL--YEEEVTKDYQ 266
L+KGKF+ S K ID E+ F+G+ W ++ DL +++E K+ Q
Sbjct: 1093 LEKGKFQVKQWCSNSKTIDKSCERYCTFLGHKWDKDRDLLTFKKEKIKETQ 1143
>SB_43460| Best HMM Match : Keratin_B2 (HMM E-Value=0.68)
Length = 306
Score = 28.7 bits (61), Expect = 3.3
Identities = 14/44 (31%), Positives = 23/44 (52%)
Frame = +3
Query: 297 LGAAPKPFDKHTFMPSALDFYQTALRDPAFYQLYNRIVGYINAF 428
+G + + F+P+ L F T+ D FY NR +G IN++
Sbjct: 1 MGVTLRRAKEKRFIPADLSFGITSFYDVYFYSPRNRSLGIINSY 44
>SB_1853| Best HMM Match : RVT_1 (HMM E-Value=5.99994e-41)
Length = 1069
Score = 27.5 bits (58), Expect = 7.6
Identities = 13/47 (27%), Positives = 23/47 (48%)
Frame = +3
Query: 150 FESYGKKIDFHDEKAINFVGNYWQENADLYEEEVTKDYQRSYEIVAR 290
FE Y ++ DEKA ++ Y ++ A + E +RSY + +
Sbjct: 138 FEIYVSLNEWQDEKAGQYLAVYLKDEAKAFYHEQEDSVRRSYRALCK 184
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,780,105
Number of Sequences: 59808
Number of extensions: 350204
Number of successful extensions: 1033
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 916
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1028
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1252112599
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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