Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0006_D16
(547 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g40770.1 68415.m05030 SNF2 domain-containing protein / helica... 30 0.88
At5g22540.1 68418.m02630 expressed protein contains Pfam profile... 29 1.5
At2g45870.1 68415.m05705 expressed protein contains Pfam profile... 29 1.5
At5g05390.1 68418.m00581 laccase, putative / diphenol oxidase, p... 28 3.5
At4g11310.1 68417.m01827 cysteine proteinase, putative contains ... 28 3.5
At3g52970.1 68416.m05839 cytochrome P450 family protein cytochro... 28 3.5
At5g15510.1 68418.m01816 expressed protein 27 6.2
At4g25940.1 68417.m03731 epsin N-terminal homology (ENTH) domain... 27 8.2
At4g18250.1 68417.m02710 receptor serine/threonine kinase, putat... 27 8.2
At1g25300.1 68414.m03140 octicosapeptide/Phox/Bem1p (PB1) domain... 27 8.2
At1g17460.1 68414.m02141 myb family transcription factor contain... 27 8.2
>At2g40770.1 68415.m05030 SNF2 domain-containing protein / helicase
domain-containing protein / zinc finger (C3HC4 type RING
finger) family protein low similarity to SP|P36607 DNA
repair protein rad8 {Schizosaccharomyces pombe};
contains Pfam profiles PF00271: Helicase conserved
C-terminal domain, PF00176: SNF2 family N-terminal
domain, PF00628: PHD-finger, PF00097: Zinc finger, C3HC4
type (RING finger)
Length = 1648
Score = 30.3 bits (65), Expect = 0.88
Identities = 14/48 (29%), Positives = 24/48 (50%)
Frame = +1
Query: 163 ARKLISTMKRQLTLSETIGKRTPICMKKKLQRIINDLMKLSLAMCSVQ 306
AR++I T+KR + P+ + +++N L+KL A C Q
Sbjct: 719 AREVIETLKRDILKRGHTSSDNPLVTHAEAAKLLNSLLKLRQACCHPQ 766
>At5g22540.1 68418.m02630 expressed protein contains Pfam profile
PF03140: Plant protein of unknown function
Length = 440
Score = 29.5 bits (63), Expect = 1.5
Identities = 13/40 (32%), Positives = 21/40 (52%)
Frame = +3
Query: 87 EAIRFLDIFEKTFVQSLQKGKFESYGKKIDFHDEKAINFV 206
EA LD+ KTFV + + + + K F+D + + FV
Sbjct: 217 EAKHLLDLIRKTFVPVPSQRRIKDHSSKSSFNDHEYLGFV 256
>At2g45870.1 68415.m05705 expressed protein contains Pfam profile
PF05249: Uncharacterised protein family (UPF0187)
Length = 410
Score = 29.5 bits (63), Expect = 1.5
Identities = 24/77 (31%), Positives = 40/77 (51%)
Frame = +1
Query: 142 KANSNRMARKLISTMKRQLTLSETIGKRTPICMKKKLQRIINDLMKLSLAMCSVQHLNHS 321
K++ + ++ KLIS +K S+ I +R + K+ L N + S S++HL H
Sbjct: 49 KSDDSPLSEKLISLLKAVPNWSDGIKERR-MQQKRSLYTHENWVRHRS----SLRHLRHV 103
Query: 322 TSTPSCPVRLTFTKPHF 372
+S+PS V L+ P F
Sbjct: 104 SSSPSSRVILSLIPPVF 120
>At5g05390.1 68418.m00581 laccase, putative / diphenol oxidase,
putative similar to laccase [Populus balsamifera subsp.
trichocarpa][GI:3805960]
Length = 565
Score = 28.3 bits (60), Expect = 3.5
Identities = 16/53 (30%), Positives = 24/53 (45%)
Frame = +3
Query: 342 SALDFYQTALRDPAFYQLYNRIVGYINAFKHYLKPYPQEKLHFVGVQINDVVV 500
S L AL P F+ + N + + A YLKP+ + L Q DV++
Sbjct: 220 SLLRVINAALNQPLFFTVANHKLTVVGADASYLKPFTTKVLMLGPGQTTDVLL 272
>At4g11310.1 68417.m01827 cysteine proteinase, putative contains
similarity to cysteine proteinase RD21A (thiol protease)
GI:435619, SP:P43297 from [Arabidopsis thaliana]
Length = 364
Score = 28.3 bits (60), Expect = 3.5
Identities = 32/109 (29%), Positives = 47/109 (43%), Gaps = 1/109 (0%)
Frame = +3
Query: 54 DNYILHSVKNYEAIRFLDIFEKTFVQSLQK-GKFESYGKKIDFHDEKAINFVGNYWQENA 230
DN LHSV + EA IFE V+ + G +++ ++ + F+ N EN
Sbjct: 33 DNNRLHSVFDAEASL---IFESWMVKHGKVYGSVAEKERRLTIFEDN-LRFINNRNAENL 88
Query: 231 DLYEEEVTKDYQRSYEIVARHVLGAAPKPFDKHTFMPSALDFYQTALRD 377
Y +T S GA P+P H FM S+ D Y+T+ D
Sbjct: 89 S-YRLGLTGFADLSLHEYKEVCHGADPRPPRNHVFMTSS-DRYKTSADD 135
>At3g52970.1 68416.m05839 cytochrome P450 family protein cytochrome
P450 76A2, eggplant, PIR:S38534
Length = 516
Score = 28.3 bits (60), Expect = 3.5
Identities = 14/37 (37%), Positives = 20/37 (54%), Gaps = 4/37 (10%)
Frame = +3
Query: 165 KKIDFHDEKAINFVGNYWQENADLYE----EEVTKDY 263
+K FH EKA G + +E ++ E +E TKDY
Sbjct: 242 RKTQFHVEKAFEIAGEFIRERTEVREREKSDEKTKDY 278
>At5g15510.1 68418.m01816 expressed protein
Length = 497
Score = 27.5 bits (58), Expect = 6.2
Identities = 21/77 (27%), Positives = 36/77 (46%), Gaps = 3/77 (3%)
Frame = +3
Query: 168 KIDFHDEKAINFVGNYWQENA---DLYEEEVTKDYQRSYEIVARHVLGAAPKPFDKHTFM 338
+ D+ + ++F+ Y E L EEE + ++ E+V + A P P+ F+
Sbjct: 397 EFDYQVAEKMSFIEQYKMERERQQKLAEEEEIRRLRK--ELVPK----AQPMPYFDRPFI 450
Query: 339 PSALDFYQTALRDPAFY 389
P + TA RDP F+
Sbjct: 451 PRRSSKHPTAPRDPKFH 467
>At4g25940.1 68417.m03731 epsin N-terminal homology (ENTH)
domain-containing protein contains Pfam PF01417: ENTH
domain. ENTH (Epsin N-terminal homology) domain; similar
to Chain B, Crystal Structure Of N-Terminal Domain Of
Drosophila Ap180 (GP:13399617) [Drosophila
melanogaster]; supporting cDNA
gi|20465326|gb|AY096427.1|
Length = 601
Score = 27.1 bits (57), Expect = 8.2
Identities = 34/123 (27%), Positives = 54/123 (43%), Gaps = 14/123 (11%)
Frame = +3
Query: 216 WQENADLYEEEVTKDYQ-RSYEIVARHV---LGAAPKPFD---KHTFMPSALDFYQTALR 374
W L+ EE + Y+ Y+I A + GA+ K D T+ L + +
Sbjct: 139 WIRTYALFLEERLECYRVLKYDIEAERLPKGSGASSKNVDFNASQTYRTRMLSDEELLEQ 198
Query: 375 DPAFYQLYNRIVGYI---NAFKHYLKPYPQE---KLHF-VGVQINDVVVEKLVTFFDYSQ 533
PA QL R++G +A+ +YL Y K F + IND ++ + FF+ S+
Sbjct: 199 LPALQQLLYRLIGCQPEGSAYSNYLIQYALALVLKESFKIYCAINDGIINLVDMFFEMSR 258
Query: 534 FDA 542
DA
Sbjct: 259 HDA 261
>At4g18250.1 68417.m02710 receptor serine/threonine kinase, putative
similar to to receptor serine/threonine kinase PR5K
gi|1235680|gb|AAC49208
Length = 853
Score = 27.1 bits (57), Expect = 8.2
Identities = 12/37 (32%), Positives = 18/37 (48%)
Frame = -2
Query: 153 RICLSVGTVRKSFQKCPRTVLLRSSLRCVGCSCPAFE 43
R C+S G V + + CP+ ++ S V CS E
Sbjct: 128 RTCISAGCVVELKKTCPKDLMKMSRENLVACSSTCME 164
>At1g25300.1 68414.m03140 octicosapeptide/Phox/Bem1p (PB1)
domain-containing protein similar to unknown protein
GI:4262226 from [Arabidopsis thaliana] contains Pfam
profile PF00564: PB1 domain
Length = 272
Score = 27.1 bits (57), Expect = 8.2
Identities = 11/31 (35%), Positives = 20/31 (64%), Gaps = 1/31 (3%)
Frame = +3
Query: 438 LKPYPQEK-LHFVGVQINDVVVEKLVTFFDY 527
+ P P EK LH++G + V+V + ++F D+
Sbjct: 21 IMPLPPEKSLHYIGGETRLVIVPRGISFLDF 51
>At1g17460.1 68414.m02141 myb family transcription factor contains
Pfam PF00249: Myb-like DNA-binding domain
Length = 604
Score = 27.1 bits (57), Expect = 8.2
Identities = 9/14 (64%), Positives = 12/14 (85%)
Frame = +1
Query: 97 GSWTFLKRLSYSPY 138
G WT +K+LS+SPY
Sbjct: 517 GKWTEIKKLSFSPY 530
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,647,605
Number of Sequences: 28952
Number of extensions: 241687
Number of successful extensions: 722
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 711
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 722
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1023490624
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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