Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0006_D15
(425 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
10_08_1040 + 22503641-22503681,22503838-22504299,22506952-225073... 29 1.6
03_06_0584 + 34909800-34910261 29 1.6
02_05_0043 - 25366965-25368211,25368555-25369070,25369185-25370091 29 2.1
03_02_0303 - 7261340-7261807 28 3.6
01_01_0651 - 4970685-4971053,4971185-4971381,4971867-4972233 27 4.8
10_01_0007 - 79867-79950,80258-80303,80409-80641,80765-80836,811... 27 6.3
09_02_0338 + 7426999-7428322,7428390-7428646 27 6.3
06_02_0235 + 13324961-13324965,13326029-13326416,13326505-133266... 27 6.3
03_05_0294 + 22855503-22855946,22856346-22856399 27 6.3
03_02_0377 - 7898075-7898605,7900782-7901000,7901079-7901142,790... 27 6.3
09_02_0071 - 3877231-3877807,3880716-3880722,3880723-3881000,388... 27 8.3
03_05_0293 + 22849103-22849513,22849670-22849756,22850156-228502... 27 8.3
>10_08_1040 +
22503641-22503681,22503838-22504299,22506952-22507361,
22507484-22507640,22507718-22507937,22508053-22508106,
22508193-22508272,22508359-22508636,22509193-22509515,
22509590-22509853,22510453-22510860
Length = 898
Score = 29.1 bits (62), Expect = 1.6
Identities = 16/45 (35%), Positives = 23/45 (51%)
Frame = -1
Query: 281 NLHCLKTCRSPHDYLHRRQLCTEALASSRLMVKTQHSRPSMMYTF 147
NL+ +C H + RRQL T+ SS + +S PS Y+F
Sbjct: 799 NLNSSSSCGEEHWRMKRRQLETQQDESSYSAKQKSYSYPSTSYSF 843
>03_06_0584 + 34909800-34910261
Length = 153
Score = 29.1 bits (62), Expect = 1.6
Identities = 14/41 (34%), Positives = 23/41 (56%)
Frame = -3
Query: 270 PKNLSISARLPSPAPALYRSISIITPNGEDTTFSSFDDVYV 148
P + S +L A A Y+ + +ITP G++ F + DD Y+
Sbjct: 42 PSLKASSKKLDVSAMATYK-VKLITPEGQEHEFEAPDDTYI 81
>02_05_0043 - 25366965-25368211,25368555-25369070,25369185-25370091
Length = 889
Score = 28.7 bits (61), Expect = 2.1
Identities = 9/21 (42%), Positives = 13/21 (61%)
Frame = -1
Query: 320 FYLS*CTDWQPRYNLHCLKTC 258
+ L CTD+ P+Y HC +C
Sbjct: 296 YLLDGCTDYNPKYKEHCSTSC 316
>03_02_0303 - 7261340-7261807
Length = 155
Score = 27.9 bits (59), Expect = 3.6
Identities = 15/41 (36%), Positives = 22/41 (53%)
Frame = -3
Query: 279 SPLPKNLSISARLPSPAPALYRSISIITPNGEDTTFSSFDD 157
S LPKNL+ + +PSP + R + + PN T + DD
Sbjct: 14 SMLPKNLAFTVFVPSP-ESFRRVLKLQRPNDSATNGNGADD 53
>01_01_0651 - 4970685-4971053,4971185-4971381,4971867-4972233
Length = 310
Score = 27.5 bits (58), Expect = 4.8
Identities = 15/41 (36%), Positives = 22/41 (53%), Gaps = 3/41 (7%)
Frame = -3
Query: 279 SPLPKNLS---ISARLPSPAPALYRSISIITPNGEDTTFSS 166
+PL K S +S+ PSP+PA Y +++ N T SS
Sbjct: 51 APLKKCFSMECLSSPSPSPSPAYYAAVAAAASNSSPTVSSS 91
>10_01_0007 -
79867-79950,80258-80303,80409-80641,80765-80836,
81135-81230,81506-81607,81684-82349
Length = 432
Score = 27.1 bits (57), Expect = 6.3
Identities = 15/51 (29%), Positives = 28/51 (54%)
Frame = +2
Query: 242 SRAEIDKFLGNGDYSGVANPYISLSKTFSEMNPDYFTMANKIYV*IGNKYT 394
S A+ D GD V + + L+ F E++PD+ ++N +Y+ G+ Y+
Sbjct: 152 SYADTDAGFRTGDTIAVHHILVFLNNWFQEVHPDF--LSNPLYI-AGDSYS 199
>09_02_0338 + 7426999-7428322,7428390-7428646
Length = 526
Score = 27.1 bits (57), Expect = 6.3
Identities = 13/27 (48%), Positives = 19/27 (70%)
Frame = -1
Query: 248 HDYLHRRQLCTEALASSRLMVKTQHSR 168
H+YLH+ + E + +SRLMV QH+R
Sbjct: 379 HNYLHKERNDLERIYNSRLMV--QHTR 403
>06_02_0235 +
13324961-13324965,13326029-13326416,13326505-13326618,
13326869-13327428,13327513-13327624,13328475-13328519
Length = 407
Score = 27.1 bits (57), Expect = 6.3
Identities = 16/36 (44%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
Frame = +2
Query: 305 ISLSKTFSEMNPDYFTMANKIYV*IGN-KYTLDEKF 409
I L FSE+ PD T+ ++ V +GN YTLD +F
Sbjct: 126 IGLGGLFSEVRPD-VTLVVRMVVTVGNYDYTLDWEF 160
>03_05_0294 + 22855503-22855946,22856346-22856399
Length = 165
Score = 27.1 bits (57), Expect = 6.3
Identities = 13/33 (39%), Positives = 19/33 (57%)
Frame = +2
Query: 173 NVVSSPLGVMMLMLLYKAGAGEGSRAEIDKFLG 271
NV SPL + + + L AGAG +R ++ LG
Sbjct: 45 NVAFSPLSLHVALSLVAAGAGGATRDQLVSLLG 77
>03_02_0377 -
7898075-7898605,7900782-7901000,7901079-7901142,
7901226-7901282,7901373-7901471,7901744-7901793,
7902378-7902422,7902967-7903062
Length = 386
Score = 27.1 bits (57), Expect = 6.3
Identities = 13/57 (22%), Positives = 25/57 (43%)
Frame = -3
Query: 246 RLPSPAPALYRSISIITPNGEDTTFSSFDDVYVSLRNCKEVLSMASPKAVLLYSWSE 76
R+P P P L+ ++S+I +F Y + C + + + P+ L W +
Sbjct: 40 RIPLPGPPLFYNVSLIMSRRSRCVLLAFGYAYPAY-ECYKTVELNKPEIEQLIFWCQ 95
>09_02_0071 -
3877231-3877807,3880716-3880722,3880723-3881000,
3881287-3883916
Length = 1163
Score = 26.6 bits (56), Expect = 8.3
Identities = 11/34 (32%), Positives = 22/34 (64%)
Frame = -3
Query: 273 LPKNLSISARLPSPAPALYRSISIITPNGEDTTF 172
+ +NL+I++ P + ++YR + I+P E T+F
Sbjct: 878 IEQNLAIASLQPGVSYSIYRETTTISPAAEITSF 911
>03_05_0293 +
22849103-22849513,22849670-22849756,22850156-22850284,
22850507-22851262,22853474-22854250
Length = 719
Score = 26.6 bits (56), Expect = 8.3
Identities = 13/33 (39%), Positives = 19/33 (57%)
Frame = +2
Query: 173 NVVSSPLGVMMLMLLYKAGAGEGSRAEIDKFLG 271
NV SPL + + + L AGAG +R ++ LG
Sbjct: 36 NVAFSPLSLHVALSLVAAGAGGATRDQLASALG 68
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,403,614
Number of Sequences: 37544
Number of extensions: 236711
Number of successful extensions: 635
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 619
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 635
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 790518168
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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