Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0006_D15
         (425 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_27357| Best HMM Match : MFMR (HMM E-Value=3.2)                      30   0.70 
SB_1509| Best HMM Match : SRR (HMM E-Value=0.22)                       30   0.70 
SB_22514| Best HMM Match : Drf_FH1 (HMM E-Value=1.8)                   30   0.92 
SB_49251| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   6.5  
SB_27317| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   6.5  
SB_52131| Best HMM Match : AIRS_C (HMM E-Value=1.69978e-42)            27   6.5  
SB_36451| Best HMM Match : AIRS_C (HMM E-Value=1.1e-27)                27   6.5  

>SB_27357| Best HMM Match : MFMR (HMM E-Value=3.2)
          Length = 468

 Score = 30.3 bits (65), Expect = 0.70
 Identities = 13/50 (26%), Positives = 30/50 (60%), Gaps = 1/50 (2%)
 Frame = +2

Query: 278 DYSGVANPYISLSKTFSEMNPDYFTMANKIYV*IGNKYTLDEKF-TITVR 424
           +YS ++  Y++LSK +S ++ +Y T++        N  TL + + T++++
Sbjct: 33  NYSTLSKNYLTLSKNYSTLSKNYLTLSKNYLTLSKNYLTLSKNYLTLSIK 82



 Score = 29.1 bits (62), Expect = 1.6
 Identities = 12/44 (27%), Positives = 25/44 (56%)
 Frame = +2

Query: 278 DYSGVANPYISLSKTFSEMNPDYFTMANKIYV*IGNKYTLDEKF 409
           +YS ++  Y++LSK +S ++ +Y T++        N  TL + +
Sbjct: 19  NYSTLSRNYLTLSKNYSTLSKNYLTLSKNYSTLSKNYLTLSKNY 62


>SB_1509| Best HMM Match : SRR (HMM E-Value=0.22)
          Length = 644

 Score = 30.3 bits (65), Expect = 0.70
 Identities = 13/50 (26%), Positives = 30/50 (60%), Gaps = 1/50 (2%)
 Frame = +2

Query: 278 DYSGVANPYISLSKTFSEMNPDYFTMANKIYV*IGNKYTLDEKF-TITVR 424
           +YS ++  Y++LSK +S ++ +Y T++        N  TL + + T++++
Sbjct: 33  NYSTLSKNYLTLSKNYSTLSKNYLTLSKNYLTLSKNYLTLSKNYLTLSIK 82



 Score = 29.9 bits (64), Expect = 0.92
 Identities = 13/50 (26%), Positives = 30/50 (60%), Gaps = 1/50 (2%)
 Frame = +2

Query: 278 DYSGVANPYISLSKTFSEMNPDYFTMANKIYV*IGNKYTLDEKF-TITVR 424
           +YS ++  Y++LSK +S ++ +Y T++        N  TL + + T++++
Sbjct: 112 NYSTLSKNYLTLSKNYSTLSKNYLTLSKNYSTLSKNYLTLSKNYLTLSIK 161



 Score = 29.1 bits (62), Expect = 1.6
 Identities = 12/44 (27%), Positives = 25/44 (56%)
 Frame = +2

Query: 278 DYSGVANPYISLSKTFSEMNPDYFTMANKIYV*IGNKYTLDEKF 409
           +YS ++  Y++LSK +S ++ +Y T++        N  TL + +
Sbjct: 19  NYSTLSRNYLTLSKNYSTLSKNYLTLSKNYSTLSKNYLTLSKNY 62


>SB_22514| Best HMM Match : Drf_FH1 (HMM E-Value=1.8)
          Length = 336

 Score = 29.9 bits (64), Expect = 0.92
 Identities = 16/45 (35%), Positives = 27/45 (60%)
 Frame = -3

Query: 276 PLPKNLSISARLPSPAPALYRSISIITPNGEDTTFSSFDDVYVSL 142
           PLP + + +   PS +PA Y S + +T  G  +TF+  D+ ++SL
Sbjct: 235 PLPTSATPTGTTPSVSPATYSSPTPVTIQG--STFTFDDNAFLSL 277


>SB_49251| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1560

 Score = 27.1 bits (57), Expect = 6.5
 Identities = 16/52 (30%), Positives = 22/52 (42%)
 Frame = -1

Query: 281 NLHCLKTCRSPHDYLHRRQLCTEALASSRLMVKTQHSRPSMMYTFP*ETAKK 126
           N  C +TCR+P +Y    +LC     S     K  ++ P     F    AKK
Sbjct: 620 NAQCRQTCRTPPNY---AELCGSLWISRITRKKPNYALPHKRVAFSNSQAKK 668


>SB_27317| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 342

 Score = 27.1 bits (57), Expect = 6.5
 Identities = 15/47 (31%), Positives = 23/47 (48%), Gaps = 2/47 (4%)
 Frame = +2

Query: 272 NGDYSGVANPYISLSKTFSE--MNPDYFTMANKIYV*IGNKYTLDEK 406
           NG YS   N   +         ++P++ T   K+YV  G+K TL E+
Sbjct: 204 NGLYSSENNVQATFDSPIKSIALDPEFSTKTTKLYVTGGSKLTLTER 250


>SB_52131| Best HMM Match : AIRS_C (HMM E-Value=1.69978e-42)
          Length = 1371

 Score = 27.1 bits (57), Expect = 6.5
 Identities = 10/25 (40%), Positives = 17/25 (68%)
 Frame = +2

Query: 107 GDAIDKTSLQFLKETYTSSKDENVV 181
           G  IDK+ ++ +K+T  +S D NV+
Sbjct: 260 GQEIDKSLMRMVKDTQITSNDNNVI 284


>SB_36451| Best HMM Match : AIRS_C (HMM E-Value=1.1e-27)
          Length = 665

 Score = 27.1 bits (57), Expect = 6.5
 Identities = 10/25 (40%), Positives = 17/25 (68%)
 Frame = +2

Query: 107 GDAIDKTSLQFLKETYTSSKDENVV 181
           G  IDK+ ++ +K+T  +S D NV+
Sbjct: 260 GQEIDKSLMRMVKDTQITSNDNNVI 284


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,215,921
Number of Sequences: 59808
Number of extensions: 268241
Number of successful extensions: 746
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 646
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 742
length of database: 16,821,457
effective HSP length: 75
effective length of database: 12,335,857
effective search space used: 814166562
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)