Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0006_D15
         (425 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g70900.1 68414.m08181 expressed protein                             28   2.3  
At1g23110.1 68414.m02889 hypothetical protein                          28   2.3  
At5g19010.1 68418.m02258 mitogen-activated protein kinase, putat...    28   3.0  
At2g26390.1 68415.m03167 serpin, putative / serine protease inhi...    27   5.3  
At2g23990.2 68415.m02866 plastocyanin-like domain-containing pro...    27   5.3  
At2g23990.1 68415.m02865 plastocyanin-like domain-containing pro...    27   5.3  
At5g59920.1 68418.m07514 DC1 domain-containing protein contains ...    26   9.3  
At5g51770.1 68418.m06419 protein kinase family protein contains ...    26   9.3  
At5g14950.1 68418.m01754 glycosyl hydrolase family 38 protein si...    26   9.3  
At4g08290.1 68417.m01370 nodulin MtN21 family protein similar to...    26   9.3  
At4g00880.1 68417.m00119 auxin-responsive family protein similar...    26   9.3  
At3g54500.2 68416.m06031 expressed protein                             26   9.3  
At3g54500.1 68416.m06030 expressed protein                             26   9.3  
At3g13170.1 68416.m01647 DNA topoisomerase VIA (SPO11-1) identic...    26   9.3  
At2g24540.1 68415.m02931 kelch repeat-containing F-box family pr...    26   9.3  
At1g62760.1 68414.m07083 invertase/pectin methylesterase inhibit...    26   9.3  

>At1g70900.1 68414.m08181 expressed protein
          Length = 244

 Score = 28.3 bits (60), Expect = 2.3
 Identities = 13/42 (30%), Positives = 22/42 (52%)
 Frame = +2

Query: 242 SRAEIDKFLGNGDYSGVANPYISLSKTFSEMNPDYFTMANKI 367
           SR +  K+L   DY+ +A   I L++   E NP +   A+ +
Sbjct: 122 SRGKFRKYLRWADYTMIATATICLTRALREENPKFLMAASAL 163


>At1g23110.1 68414.m02889 hypothetical protein 
          Length = 261

 Score = 28.3 bits (60), Expect = 2.3
 Identities = 19/62 (30%), Positives = 31/62 (50%)
 Frame = +2

Query: 182 SSPLGVMMLMLLYKAGAGEGSRAEIDKFLGNGDYSGVANPYISLSKTFSEMNPDYFTMAN 361
           +S +GV +   LY A     SR ++ K+L   DY+ +A   I LS+     NP +   A+
Sbjct: 124 NSLIGVGIASSLYHA-----SRGKLRKYLRWVDYTMIATTTICLSRALRNENPKFLMAAS 178

Query: 362 KI 367
            +
Sbjct: 179 AL 180


>At5g19010.1 68418.m02258 mitogen-activated protein kinase, putative
           / MAPK, putative (MPK16) mitogen-activated protein
           kinase (MAPK)(AtMPK16), PMID:12119167; similar to
           ATMPK9, Arabidopsis thaliana, EMBL:AB038694
          Length = 567

 Score = 27.9 bits (59), Expect = 3.0
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = +2

Query: 233 GEGSRAEIDKFLGNGDYSGVANPY 304
           GEGSR  I++ +G G Y  V + Y
Sbjct: 20  GEGSRYRIEEVIGKGSYGVVCSAY 43


>At2g26390.1 68415.m03167 serpin, putative / serine protease
           inhibitor, putative similar to phloem serpin-1
           [Cucurbita maxima] GI:9937311; contains Pfam profile
           PF00079: Serpin (serine protease inhibitor)
          Length = 389

 Score = 27.1 bits (57), Expect = 5.3
 Identities = 13/32 (40%), Positives = 20/32 (62%)
 Frame = +2

Query: 173 NVVSSPLGVMMLMLLYKAGAGEGSRAEIDKFL 268
           NVV SP+ + +L+ L  AG+   ++ EI  FL
Sbjct: 31  NVVFSPMSINVLLSLIAAGSNPVTKEEILSFL 62


>At2g23990.2 68415.m02866 plastocyanin-like domain-containing
           protein 
          Length = 226

 Score = 27.1 bits (57), Expect = 5.3
 Identities = 12/31 (38%), Positives = 19/31 (61%)
 Frame = -3

Query: 279 SPLPKNLSISARLPSPAPALYRSISIITPNG 187
           +P PK+ S S   P+PAPA   ++ ++  NG
Sbjct: 181 TPSPKS-STSTMAPAPAPAKSSAVGLVAGNG 210


>At2g23990.1 68415.m02865 plastocyanin-like domain-containing
           protein 
          Length = 207

 Score = 27.1 bits (57), Expect = 5.3
 Identities = 12/31 (38%), Positives = 19/31 (61%)
 Frame = -3

Query: 279 SPLPKNLSISARLPSPAPALYRSISIITPNG 187
           +P PK+ S S   P+PAPA   ++ ++  NG
Sbjct: 162 TPSPKS-STSTMAPAPAPAKSSAVGLVAGNG 191


>At5g59920.1 68418.m07514 DC1 domain-containing protein contains
           Pfam profile PF03107: DC1 domain
          Length = 710

 Score = 26.2 bits (55), Expect = 9.3
 Identities = 15/41 (36%), Positives = 19/41 (46%)
 Frame = +1

Query: 88  VQQDSLRRCH*QNFFAVS*GNVYIIEGRECCVFTIRRDDAN 210
           V  D  RRC       V  G++Y+ E  ECC F +    AN
Sbjct: 384 VIHDERRRCE-ACIHPVQFGSIYVCEEEECC-FVLHEKCAN 422


>At5g51770.1 68418.m06419 protein kinase family protein contains
           protein kinase domain, Pfam:PF00069
          Length = 654

 Score = 26.2 bits (55), Expect = 9.3
 Identities = 14/30 (46%), Positives = 16/30 (53%)
 Frame = -3

Query: 252 SARLPSPAPALYRSISIITPNGEDTTFSSF 163
           S  LPSPAP      S +TP+ E TT   F
Sbjct: 3   SRTLPSPAPVNSPFSSSVTPHHETTTTRIF 32


>At5g14950.1 68418.m01754 glycosyl hydrolase family 38 protein
           similar to alpha-mannosidase II SP:P27046 from [Mus
           musculus]
          Length = 1173

 Score = 26.2 bits (55), Expect = 9.3
 Identities = 10/29 (34%), Positives = 17/29 (58%)
 Frame = -3

Query: 222 LYRSISIITPNGEDTTFSSFDDVYVSLRN 136
           LYR+ +++ P G+D  + S D+     RN
Sbjct: 401 LYRTNTLLIPLGDDFRYISIDEAEAQFRN 429


>At4g08290.1 68417.m01370 nodulin MtN21 family protein similar to
           MtN21 GI:2598575 (root nodule development) from
           [Medicago truncatula]
          Length = 384

 Score = 26.2 bits (55), Expect = 9.3
 Identities = 18/50 (36%), Positives = 24/50 (48%)
 Frame = +2

Query: 38  AVIAVCNVRAFYSSDHEYNRTALGDAIDKTSLQFLKETYTSSKDENVVSS 187
           AVIA       +    +Y  + L D ++K SLQ L  T  S  D  +VSS
Sbjct: 316 AVIAAGLYMVVWGKGKDYEVSGL-DILEKNSLQELPITTKSEDDNKLVSS 364


>At4g00880.1 68417.m00119 auxin-responsive family protein similar to
           small auxin up RNA (GI:546362) {Arabidopsis thaliana}
          Length = 122

 Score = 26.2 bits (55), Expect = 9.3
 Identities = 9/22 (40%), Positives = 12/22 (54%)
 Frame = -2

Query: 262 LVDLRTTTFTGASFVQKH*HHH 197
           L+D   T F G + +  H HHH
Sbjct: 92  LIDRENTRFLGTNLLDHHHHHH 113


>At3g54500.2 68416.m06031 expressed protein 
          Length = 648

 Score = 26.2 bits (55), Expect = 9.3
 Identities = 15/66 (22%), Positives = 31/66 (46%), Gaps = 3/66 (4%)
 Frame = +2

Query: 155 TSSKDENVVSSPLGVMMLMLLYKAGAGEGSRAEI---DKFLGNGDYSGVANPYISLSKTF 325
           ++ K  N ++ P   +M + L     G G+       ++++ N  +  +ANPY S+    
Sbjct: 291 SAGKCVNQLAPPQSSLMAVNLLSESEGSGTSHYSHMPNQYMANSAFGNLANPYSSVPVIS 350

Query: 326 SEMNPD 343
           +  +PD
Sbjct: 351 AVQHPD 356


>At3g54500.1 68416.m06030 expressed protein 
          Length = 648

 Score = 26.2 bits (55), Expect = 9.3
 Identities = 15/66 (22%), Positives = 31/66 (46%), Gaps = 3/66 (4%)
 Frame = +2

Query: 155 TSSKDENVVSSPLGVMMLMLLYKAGAGEGSRAEI---DKFLGNGDYSGVANPYISLSKTF 325
           ++ K  N ++ P   +M + L     G G+       ++++ N  +  +ANPY S+    
Sbjct: 291 SAGKCVNQLAPPQSSLMAVNLLSESEGSGTSHYSHMPNQYMANSAFGNLANPYSSVPVIS 350

Query: 326 SEMNPD 343
           +  +PD
Sbjct: 351 AVQHPD 356


>At3g13170.1 68416.m01647 DNA topoisomerase VIA (SPO11-1) identical
           to AtSPO11-1 [Arabidopsis thaliana] GI:13383478;
           contains Pfam profile PF04406: Type IIB DNA
           topoisomerase; identical to cDNA putative topoisomerase
           VIA (SPO11 gene 1) GI:7270974
          Length = 362

 Score = 26.2 bits (55), Expect = 9.3
 Identities = 13/27 (48%), Positives = 15/27 (55%)
 Frame = +2

Query: 110 DAIDKTSLQFLKETYTSSKDENVVSSP 190
           +A+   SL FL E Y  SK    VSSP
Sbjct: 336 EALSVHSLSFLSEVYIPSKIRREVSSP 362


>At2g24540.1 68415.m02931 kelch repeat-containing F-box family
           protein similar to SKP1 interacting partner 4
           [Arabidopsis thaliana] GI:10716953; contains Pfam
           profiles PF01344: Kelch motif, PF00646: F-box domain
          Length = 372

 Score = 26.2 bits (55), Expect = 9.3
 Identities = 15/30 (50%), Positives = 19/30 (63%), Gaps = 2/30 (6%)
 Frame = -3

Query: 288 PL*SPLPKNLS--ISARLPSPAPALYRSIS 205
           PL S LP +++     RLP P  ALYRS+S
Sbjct: 27  PLISGLPNDIAELCLLRLPYPYHALYRSVS 56


>At1g62760.1 68414.m07083 invertase/pectin methylesterase inhibitor
           family protein low similarity to extensin [Volvox
           carteri] GI:21992
          Length = 312

 Score = 26.2 bits (55), Expect = 9.3
 Identities = 11/35 (31%), Positives = 19/35 (54%)
 Frame = -3

Query: 270 PKNLSISARLPSPAPALYRSISIITPNGEDTTFSS 166
           P  LS+S   P P P     +S ++P+   +T+S+
Sbjct: 107 PPPLSLSPSSPPPPPPSSSPLSSLSPSSSSSTYSN 141


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,165,381
Number of Sequences: 28952
Number of extensions: 185717
Number of successful extensions: 529
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 515
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 529
length of database: 12,070,560
effective HSP length: 74
effective length of database: 9,928,112
effective search space used: 665183504
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)