Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0006_D13
(587 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC2G2.14 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 29 0.50
SPAC959.09c |apc5|SPAP32A8.01c|anaphase-promoting complex subuni... 26 3.5
SPCC1827.02c |||cholinephosphate cytidylyltransferase |Schizosac... 26 3.5
SPAC4A8.11c |fas2|lsd1|fatty acid synthase alpha subunit Lsd1 |S... 26 4.7
SPAC144.05 |||ATP-dependent DNA helicase|Schizosaccharomyces pom... 26 4.7
SPAC212.08c |||GPI anchored protein |Schizosaccharomyces pombe|c... 25 6.2
SPAC26H5.04 |||vacuolar import and degradation protein Vid28|Sch... 25 6.2
SPAC227.08c |yth1||zinc finger protein Yth1|Schizosaccharomyces ... 25 6.2
SPAC1F3.02c |mkh1||MEK kinase |Schizosaccharomyces pombe|chr 1||... 25 8.2
SPAC1D4.11c |lkh1|kic1|dual specificity protein kinase Lkh1|Schi... 25 8.2
>SPBC2G2.14 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 533
Score = 29.1 bits (62), Expect = 0.50
Identities = 22/87 (25%), Positives = 36/87 (41%), Gaps = 5/87 (5%)
Frame = +2
Query: 227 FLAPKYDSRGFEIPLHVNSENFFLLNHFIHELPAGESVIVKESTENLFT--VDDFKSAN- 397
F+ PK D++ P + +HF + L A I K+S D+ N
Sbjct: 132 FVPPKSDAKSHSAPRSLEGVTSLSDSHF-NSLEANLKAISKDSNNKAHNNRYDESSLTNP 190
Query: 398 --EIYVKAQNIVEGKKETLEERTRHCD 472
I V+ +E ++L+ER HC+
Sbjct: 191 EFSILVERLKSIEENLQSLQERISHCE 217
>SPAC959.09c |apc5|SPAP32A8.01c|anaphase-promoting complex subunit
Apc5 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 737
Score = 26.2 bits (55), Expect = 3.5
Identities = 10/32 (31%), Positives = 20/32 (62%)
Frame = +2
Query: 359 ENLFTVDDFKSANEIYVKAQNIVEGKKETLEE 454
E L+++ F+ +EI++ N +EG ++ EE
Sbjct: 94 ERLWSLHSFEDIHEIFISLGNYIEGVYDSEEE 125
>SPCC1827.02c |||cholinephosphate cytidylyltransferase
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 354
Score = 26.2 bits (55), Expect = 3.5
Identities = 14/43 (32%), Positives = 22/43 (51%)
Frame = +3
Query: 186 KLQVKLPRRWRLSFSWHLNMTAAVLRSHYMSTQRISSC*ITSF 314
+L V L ++ L H+ + LR+H++ST R I SF
Sbjct: 246 ELNVSLFKKNELDLRHHIKVLRDTLRNHWVSTTRDLKADIKSF 288
>SPAC4A8.11c |fas2|lsd1|fatty acid synthase alpha subunit Lsd1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1842
Score = 25.8 bits (54), Expect = 4.7
Identities = 14/34 (41%), Positives = 20/34 (58%)
Frame = -1
Query: 581 LHCRKRSVDGIQKYRPSIHTAYHQHDLSVIKDGA 480
LH RK+SVDG ++ S+ Y L V++ GA
Sbjct: 598 LHIRKKSVDGNWEFNKSLTGTY----LDVLESGA 627
>SPAC144.05 |||ATP-dependent DNA helicase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1375
Score = 25.8 bits (54), Expect = 4.7
Identities = 20/65 (30%), Positives = 33/65 (50%), Gaps = 3/65 (4%)
Frame = +2
Query: 239 KYDSRGFEIPLHVNSENFFLLNHFIHELPAGESVIVK---ESTENLFTVDDFKSANEIYV 409
KY+ G +P+ N+F L+HFIH L ++ K F++ + K NE Y+
Sbjct: 667 KYEDHGKNLPI-----NYFGLDHFIH-LRVWYVLLHKIYFFIASAYFSLKNEKFENEFYL 720
Query: 410 KAQNI 424
AQ++
Sbjct: 721 LAQDL 725
>SPAC212.08c |||GPI anchored protein |Schizosaccharomyces pombe|chr
1|||Manual
Length = 278
Score = 25.4 bits (53), Expect = 6.2
Identities = 10/37 (27%), Positives = 21/37 (56%)
Frame = -1
Query: 515 HQHDLSVIKDGAGINHNVLSVPQEFLFYPQQYFELSH 405
H ++ + + + +G+ N ++ + FYPQ F +SH
Sbjct: 169 HYYNKTYVINYSGLKLNSSAINKRSYFYPQDSFLVSH 205
>SPAC26H5.04 |||vacuolar import and degradation protein
Vid28|Schizosaccharomyces pombe|chr 1|||Manual
Length = 729
Score = 25.4 bits (53), Expect = 6.2
Identities = 11/24 (45%), Positives = 18/24 (75%)
Frame = -2
Query: 232 QEKLNLHLLGNFTCNLDPNVEFLM 161
QE++ L +L NFTC + +V+FL+
Sbjct: 528 QEQM-LQVLRNFTCQKEESVDFLL 550
>SPAC227.08c |yth1||zinc finger protein Yth1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 170
Score = 25.4 bits (53), Expect = 6.2
Identities = 8/24 (33%), Positives = 12/24 (50%)
Frame = -3
Query: 531 NTYGIPPTRPFGNKRWCGNKSQCL 460
N +PP + + WC N +CL
Sbjct: 75 NLKKMPPCHFYAERGWCSNGEECL 98
>SPAC1F3.02c |mkh1||MEK kinase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1116
Score = 25.0 bits (52), Expect = 8.2
Identities = 20/73 (27%), Positives = 32/73 (43%)
Frame = +2
Query: 311 IHELPAGESVIVKESTENLFTVDDFKSANEIYVKAQNIVEGKKETLEERTRHCDLFPHHL 490
IH L + +I K+ + L T+DD K QN + +K L ++ + D+
Sbjct: 280 IHRLESQIGLISKKKSFVLATMDDMKFTVVDITNVQNATQLRK--LIAKSMYLDISIDQF 337
Query: 491 LLPKGRVGGMPYV 529
L VGG Y+
Sbjct: 338 DLFLTEVGGAQYI 350
>SPAC1D4.11c |lkh1|kic1|dual specificity protein kinase
Lkh1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 690
Score = 25.0 bits (52), Expect = 8.2
Identities = 10/25 (40%), Positives = 15/25 (60%)
Frame = +3
Query: 471 IYSRTIFYYRKVVLVVCRMY*WSIF 545
I R F YRK + +V ++ WS+F
Sbjct: 425 IQLRDYFDYRKHICIVTDLFGWSVF 449
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,360,054
Number of Sequences: 5004
Number of extensions: 47498
Number of successful extensions: 140
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 135
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 140
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 254167452
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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