Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0006_D13
         (587 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_01_0676 - 5511755-5511831,5512857-5513052,5513462-5513577,551...    28   4.8  
05_01_0372 - 2913518-2916562,2916674-2917528                           28   4.8  

>11_01_0676 - 5511755-5511831,5512857-5513052,5513462-5513577,
            5513752-5514597,5515515-5515766,5522344-5525206
          Length = 1449

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 15/46 (32%), Positives = 20/46 (43%)
 Frame = -2

Query: 463  SCPFLKSFFFTLNNILSFHINFIS*LEIIDCKQVFRGLFDDHAFSC 326
            SCP LK  +FT N         +S    I C  +F   FD++   C
Sbjct: 1284 SCPALKELYFTKNCGFDSVYEILS--RSIQCLHIFHCQFDEYCDGC 1327


>05_01_0372 - 2913518-2916562,2916674-2917528
          Length = 1299

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 16/40 (40%), Positives = 20/40 (50%)
 Frame = +2

Query: 323 PAGESVIVKESTENLFTVDDFKSANEIYVKAQNIVEGKKE 442
           P      V+ESTE   TVDD  S    +V A++ VE   E
Sbjct: 297 PVSAESAVEESTEKEQTVDDTSSEMIAHVSAESAVEESTE 336


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,773,388
Number of Sequences: 37544
Number of extensions: 289946
Number of successful extensions: 665
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 640
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 664
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1388195172
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)