Samia BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0006_D11
         (602 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY887136-1|AAW78361.1|  580|Tribolium castaneum vasa RNA helicas...   118   4e-29
DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro...    24   1.1  

>AY887136-1|AAW78361.1|  580|Tribolium castaneum vasa RNA helicase
           protein.
          Length = 580

 Score =  118 bits (284), Expect = 4e-29
 Identities = 66/172 (38%), Positives = 105/172 (61%), Gaps = 4/172 (2%)
 Frame = +1

Query: 1   PIALVLAPTRELAQQIQQVASEFGNSSYVRNTCVFGGAPKREQARDLERGVEIVIATPGR 180
           P+ ++++PTRELA QI     +F  +S V+   ++GG     Q   +  G  I++ATPGR
Sbjct: 236 PVVVIMSPTRELAIQIADQGKKFAYNSTVKVAVIYGGTSTNHQRGRILGGCHILVATPGR 295

Query: 181 LIDFLEKGTTNLQRCTYLVLDEADRMLDMGFEPQIRKIID-QIRP---DRQTLMWSATWP 348
           L DF+ +G  +     Y VLDEADRMLDMGF   + +++  Q  P   +RQTLM+SAT+P
Sbjct: 296 LKDFVNRGNVSFNSLKYFVLDEADRMLDMGFLGDVEEMLSHQSMPATGERQTLMFSATFP 355

Query: 349 KEVRKLAEDYLGDYVQINIGSLQLSANHNILQIVDVCQEHEKENKLNVLLQE 504
           +EV++LA  +L +Y+ I +G +  SA  ++ Q      + +K +KL  +L++
Sbjct: 356 EEVQQLAGKFLLNYIFIAVGIVG-SACTDVEQKFFQVSKFDKRSKLVSILEK 406



 Score = 25.8 bits (54), Expect = 0.28
 Identities = 10/14 (71%), Positives = 13/14 (92%)
 Frame = +2

Query: 530 QRTIIFVETKRKAE 571
           +RT+IFVETKR A+
Sbjct: 410 ERTLIFVETKRNAD 423


>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 protein.
          Length = 2700

 Score = 23.8 bits (49), Expect = 1.1
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = +2

Query: 41   NKYSRLLQNLAIHLMFVIHV 100
            +KYSRL+ N A    F+ HV
Sbjct: 1484 DKYSRLVNNPAARARFIKHV 1503



 Score = 23.0 bits (47), Expect = 2.0
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = +2

Query: 41   NKYSRLLQNLAIHLMFVIHV 100
            +KYSRL+ N +    F+ HV
Sbjct: 1909 DKYSRLVNNPSARRRFIAHV 1928



 Score = 22.6 bits (46), Expect = 2.6
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = +2

Query: 41   NKYSRLLQNLAIHLMFVIHV 100
            NKYSRL+ +      F+ HV
Sbjct: 2407 NKYSRLVNDPQARAAFIAHV 2426


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 153,499
Number of Sequences: 336
Number of extensions: 3525
Number of successful extensions: 6
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 15248386
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)