Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0006_D11
(602 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBP8B7.16c |dbp2||ATP-dependent RNA helicase Dbp2|Schizosacchar... 247 8e-67
SPCC10H11.01 |prp11||ATP-dependent RNA helicase Prp11|Schizosacc... 169 4e-43
SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase Su... 150 2e-37
SPBC17D1.06 |dbp3||ATP-dependent RNA helicase Dbp3 |Schizosaccha... 142 5e-35
SPCC63.11 |prp28||U5 snRNP-associated protein Prp28 |Schizosacch... 120 2e-28
SPAC823.08c |||ATP-dependent RNA helicase Rrp3 |Schizosaccharomy... 103 2e-23
SPBC776.09 |ste13||ATP-dependent RNA helicase Ste13|Schizosaccha... 99 4e-22
SPAC1006.07 |||translation initiation factor eIF4A|Schizosacchar... 99 6e-22
SPAC31A2.07c |dbp10||ATP-dependent RNA helicase Dbp10 |Schizosac... 96 4e-21
SPAC1F7.02c |||ATP-dependent RNA helicase Has1 |Schizosaccharomy... 91 1e-19
SPBC21H7.04 |||ATP-dependent RNA helicase Dbp7 |Schizosaccharomy... 87 1e-18
SPAC1F5.10 |||ATP-dependent RNA helicase, eIF4A related|Schizosa... 87 2e-18
SPAC30D11.03 |drs1||ATP-dependent RNA helicase Drs1 |Schizosacch... 86 4e-18
SPBC12C2.06 |||ATP-dependent RNA helicase Dbp5|Schizosaccharomyc... 82 7e-17
SPAC1093.05 |||ATP-dependent RNA helicase Hca4 |Schizosaccharomy... 81 2e-16
SPBC543.06c |dbp8||ATP-dependent RNA helicase Dbp8 |Schizosaccha... 79 4e-16
SPAC17G6.14c |uap56||ATP-dependent RNA helicase Uap56|Schizosacc... 76 3e-15
SPBC691.04 |||mitochondrial ATP-dependent RNA helicase Mss116 |S... 75 1e-14
SPBC4F6.07c |||ATP-dependent RNA helicase Mak5 |Schizosaccharomy... 72 6e-14
SPBC24C6.02 |||ATP-dependent RNA helicase Spb4 |Schizosaccharomy... 67 2e-12
SPCC1494.06c |||ATP-dependent RNA helicase Dbp9 |Schizosaccharom... 65 7e-12
SPAC22F3.08c |rok1||ATP-dependent RNA helicase Rok1 |Schizosacch... 61 1e-10
SPCC285.03 |||ATP-dependent RNA helicase Dbp6|Schizosaccharomyce... 56 5e-09
SPCC417.09c |||transcription factor |Schizosaccharomyces pombe|c... 35 0.011
SPAC1805.06c |hem2||porphobilinogen synthase Hem2 |Schizosacchar... 27 1.6
SPAPJ698.03c |prp12|sap130|U2 snRNP-associated protein Sap130 |S... 26 3.7
SPAC7D4.05 |||hydrolase |Schizosaccharomyces pombe|chr 1|||Manual 26 4.9
SPAC27F1.06c |||FKBP-type peptidyl-prolyl cis-trans isomerase |S... 25 6.4
SPAC9.05 |mfh1||ATP-dependent DNA helicase Mfh1 |Schizosaccharom... 25 6.4
SPBC3D6.09 |dpb4||DNA polymerase epsilon subunit Dpb4 |Schizosac... 25 8.5
>SPBP8B7.16c |dbp2||ATP-dependent RNA helicase
Dbp2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 550
Score = 247 bits (605), Expect = 8e-67
Identities = 115/174 (66%), Positives = 142/174 (81%)
Frame = +1
Query: 1 PIALVLAPTRELAQQIQQVASEFGNSSYVRNTCVFGGAPKREQARDLERGVEIVIATPGR 180
PI LVLAPTRELA QIQQ ++FG SS +RNTCV+GG P+ Q RDL RGVEI IATPGR
Sbjct: 196 PIVLVLAPTRELAVQIQQECTKFGKSSRIRNTCVYGGVPRGPQIRDLIRGVEICIATPGR 255
Query: 181 LIDFLEKGTTNLQRCTYLVLDEADRMLDMGFEPQIRKIIDQIRPDRQTLMWSATWPKEVR 360
L+D L+ TNL+R TYLVLDEADRMLDMGFEPQIRKI+DQIRPDRQT+M+SATWPKEV+
Sbjct: 256 LLDMLDSNKTNLRRVTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTVMFSATWPKEVQ 315
Query: 361 KLAEDYLGDYVQINIGSLQLSANHNILQIVDVCQEHEKENKLNVLLQEIGQNQD 522
+LA DYL DY+Q+ +GSL L+A+HNI QIV+V +K +L ++E+ +++D
Sbjct: 316 RLARDYLNDYIQVTVGSLDLAASHNIKQIVEVVDNADKRARLGKDIEEVLKDRD 369
Score = 25.8 bits (54), Expect = 4.9
Identities = 11/23 (47%), Positives = 17/23 (73%)
Frame = +2
Query: 533 RTIIFVETKRKAENITRNIRRYG 601
+ +IF TKR A++ITR +R+ G
Sbjct: 371 KVLIFTGTKRVADDITRFLRQDG 393
>SPCC10H11.01 |prp11||ATP-dependent RNA helicase
Prp11|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1014
Score = 169 bits (410), Expect = 4e-43
Identities = 87/176 (49%), Positives = 117/176 (66%), Gaps = 3/176 (1%)
Frame = +1
Query: 1 PIALVLAPTRELAQQIQQVASEFGNSSYVRNTCVFGGAPKREQARDLERGVEIVIATPGR 180
PIA+++ PTRELA QI + F +R C +GGAP ++Q DL+RG EIV+ TPGR
Sbjct: 492 PIAIIMTPTRELAVQIFRECKPFLKLLNIRACCAYGGAPIKDQIADLKRGAEIVVCTPGR 551
Query: 181 LIDFLEKGT---TNLQRCTYLVLDEADRMLDMGFEPQIRKIIDQIRPDRQTLMWSATWPK 351
+ID L TNL RCTYLVLDEADRM D+GFEPQ+ +II+ IRPDRQT+++SAT+P+
Sbjct: 552 MIDVLSANAGRVTNLHRCTYLVLDEADRMFDLGFEPQVMRIINNIRPDRQTVLFSATFPR 611
Query: 352 EVRKLAEDYLGDYVQINIGSLQLSANHNILQIVDVCQEHEKENKLNVLLQEIGQNQ 519
+ LA L V+I +G + A+ + QIV+V E K ++L LL E+ NQ
Sbjct: 612 AMEALARKVLKKPVEITVGGRSVVAS-EVEQIVEVRPEESKFSRLLELLGELYNNQ 666
>SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase
Sum3|Schizosaccharomyces pombe|chr 3|||Manual
Length = 636
Score = 150 bits (363), Expect = 2e-37
Identities = 78/173 (45%), Positives = 116/173 (67%), Gaps = 4/173 (2%)
Frame = +1
Query: 1 PIALVLAPTRELAQQIQQVASEFGNSSYVRNTCVFGGAPKREQARDLERGVEIVIATPGR 180
P L+LAPTREL QI + + +F S+VR V+GGA R Q R +++G +++ ATPGR
Sbjct: 256 PTTLILAPTRELVCQIHEESRKFCYRSWVRPCAVYGGADIRAQIRQIDQGCDLLSATPGR 315
Query: 181 LIDFLEKGTTNLQRCTYLVLDEADRMLDMGFEPQIRKIIDQIR----PDRQTLMWSATWP 348
L+D +++G +L +LVLDEADRMLDMGFEPQIR I++ +RQTLM+SAT+P
Sbjct: 316 LVDLIDRGRISLANIKFLVLDEADRMLDMGFEPQIRHIVEGADMTSVEERQTLMFSATFP 375
Query: 349 KEVRKLAEDYLGDYVQINIGSLQLSANHNILQIVDVCQEHEKENKLNVLLQEI 507
++++ LA D+L DYV +++G + S + NI Q V ++ EK + L +L +
Sbjct: 376 RDIQLLARDFLKDYVFLSVGRVG-STSENITQKVVHVEDSEKRSYLLDILHTL 427
Score = 25.4 bits (53), Expect = 6.4
Identities = 10/15 (66%), Positives = 13/15 (86%)
Frame = +2
Query: 536 TIIFVETKRKAENIT 580
T+IFVETKR A+ +T
Sbjct: 433 TLIFVETKRMADTLT 447
>SPBC17D1.06 |dbp3||ATP-dependent RNA helicase Dbp3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 578
Score = 142 bits (343), Expect = 5e-35
Identities = 84/189 (44%), Positives = 115/189 (60%), Gaps = 7/189 (3%)
Frame = +1
Query: 1 PIALVLAPTRELAQQIQQVASEFGNSSYVRNTCVFGGAPKREQARDLERGVEIVIATPGR 180
P LV++PTRELA Q + + + ++ V+GGAPK EQAR + ++I TPGR
Sbjct: 237 PRVLVVSPTRELAIQTYENLNSLIQGTNLKAVVVYGGAPKSEQAR-AAKNASVIIGTPGR 295
Query: 181 LIDFLEKGTTNLQRCTYLVLDEADRMLDMGFEPQIRKIIDQIRPD------RQTLMWSAT 342
L+D + G+ + + YLVLDEADRMLD GFE IR II PD RQT+ +SAT
Sbjct: 296 LLDLINDGSIDCSQVGYLVLDEADRMLDTGFEQDIRNIISH-TPDPTRNGSRQTVFFSAT 354
Query: 343 WPKEVRKLAEDYLGDYVQINIGSLQLSANHNILQIVDVCQE-HEKENKLNVLLQEIGQNQ 519
WP+ VR LA +L D V+I IGS +L+A+ NI QIV++ + KE L+ LL+ ++
Sbjct: 355 WPESVRALAATFLKDPVKITIGSDELAASQNITQIVEILDDPRSKERMLDNLLR---KHL 411
Query: 520 DPGAKDHYI 546
G KD I
Sbjct: 412 SSGGKDDKI 420
>SPCC63.11 |prp28||U5 snRNP-associated protein Prp28
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 662
Score = 120 bits (289), Expect = 2e-28
Identities = 71/186 (38%), Positives = 104/186 (55%), Gaps = 19/186 (10%)
Frame = +1
Query: 1 PIALVLAPTRELAQQIQQVASEFGNSSYVRNTCVFGGAPKREQARDLERGVEIVIATPGR 180
P A+VLAPTRELAQQIQ ++F R V GG EQ+ + +G IV+ATPGR
Sbjct: 326 PYAVVLAPTRELAQQIQVEGNKFAEPLGFRCVSVVGGHAFEEQSFQMSQGAHIVVATPGR 385
Query: 181 LIDFLEKGTTNLQRCTYLVLDEADRMLDMGFEPQIRKIIDQIRPD--------------- 315
L+D LE+ L +CTY+V+DEADRMLDMGFE + KI+ +
Sbjct: 386 LLDCLERRLFVLSQCTYVVMDEADRMLDMGFEDDVNKILSSLPSSNASEKDGSILATANS 445
Query: 316 ----RQTLMWSATWPKEVRKLAEDYLGDYVQINIGSLQLSANHNILQIVDVCQEHEKENK 483
RQT+M+SAT P V LA+ YL + V + IG++ + + ++ + + +K +
Sbjct: 446 SSSRRQTIMFSATLPPRVANLAKSYLIEPVMLTIGNIGQAVDRVEQRVEMISDDSKKWRR 505
Query: 484 LNVLLQ 501
+ +L+
Sbjct: 506 VEEILE 511
>SPAC823.08c |||ATP-dependent RNA helicase Rrp3 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 465
Score = 103 bits (248), Expect = 2e-23
Identities = 67/172 (38%), Positives = 96/172 (55%), Gaps = 2/172 (1%)
Frame = +1
Query: 7 ALVLAPTRELAQQIQQVASEFGNSSYVRNTCVFGGAPKREQARDLERGVEIVIATPGRLI 186
A+VLAPTRELA QI + G S VR+ + GG QA L + +++ TPGRL+
Sbjct: 117 AVVLAPTRELAYQISEQFEAIGGSIGVRSVVIVGGMDMVTQAVALSKKPHVLVCTPGRLM 176
Query: 187 DFLE--KGTTNLQRCTYLVLDEADRMLDMGFEPQIRKIIDQIRPDRQTLMWSATWPKEVR 360
D LE KG + L+ YL++DEADR+LDM F P I KI+ I +R+TL++SAT +V
Sbjct: 177 DHLENTKGFS-LKNLKYLIMDEADRLLDMDFGPIIDKILKIIPHERRTLLFSATMTSKVE 235
Query: 361 KLAEDYLGDYVQINIGSLQLSANHNILQIVDVCQEHEKENKLNVLLQEIGQN 516
KL L V++ + S + S ++Q K+ L L+ E+ N
Sbjct: 236 KLQRASLHQPVRVAVSS-KFSTVDTLIQRYLFFPFKHKDTYLVYLVNELAGN 286
>SPBC776.09 |ste13||ATP-dependent RNA helicase
Ste13|Schizosaccharomyces pombe|chr 2|||Manual
Length = 485
Score = 99.1 bits (236), Expect = 4e-22
Identities = 56/170 (32%), Positives = 84/170 (49%)
Frame = +1
Query: 10 LVLAPTRELAQQIQQVASEFGNSSYVRNTCVFGGAPKREQARDLERGVEIVIATPGRLID 189
L+L PTRELA Q QV G V+ GG R+ L V IV+ TPGR++D
Sbjct: 116 LILVPTRELALQTSQVCKTLGKHMNVKVMVTTGGTTLRDDIIRLNDTVHIVVGTPGRVLD 175
Query: 190 FLEKGTTNLQRCTYLVLDEADRMLDMGFEPQIRKIIDQIRPDRQTLMWSATWPKEVRKLA 369
KG + CT V+DEAD++L F P I +++ +RQ ++SAT+P V+
Sbjct: 176 LAGKGVADFSECTTFVMDEADKLLSPEFTPIIEQLLSYFPKNRQISLYSATFPLIVKNFM 235
Query: 370 EDYLGDYVQINIGSLQLSANHNILQIVDVCQEHEKENKLNVLLQEIGQNQ 519
+ +L +IN+ + + Q E +K + LN L ++ NQ
Sbjct: 236 DKHLNKPYEINL--MDELTLRGVTQYYAFVDESQKVHCLNTLFSKLQINQ 283
>SPAC1006.07 |||translation initiation factor
eIF4A|Schizosaccharomyces pombe|chr 1|||Manual
Length = 392
Score = 98.7 bits (235), Expect = 6e-22
Identities = 52/139 (37%), Positives = 78/139 (56%)
Frame = +1
Query: 7 ALVLAPTRELAQQIQQVASEFGNSSYVRNTCVFGGAPKREQARDLERGVEIVIATPGRLI 186
AL+LAPTRELAQQIQ+V G+ V GG R+ L+ GV +V+ TPGR+
Sbjct: 90 ALILAPTRELAQQIQKVVVALGDLMNVECHACIGGTLVRDDMAALQAGVHVVVGTPGRVH 149
Query: 187 DFLEKGTTNLQRCTYLVLDEADRMLDMGFEPQIRKIIDQIRPDRQTLMWSATWPKEVRKL 366
D +++ VLDEAD ML GF+ QI I + P Q ++ SAT P++V ++
Sbjct: 150 DMIQRRALPTDAVQMFVLDEADEMLSRGFKDQIYDIFQLLPPTAQVVLLSATMPQDVLEV 209
Query: 367 AEDYLGDYVQINIGSLQLS 423
++ D ++I + +L+
Sbjct: 210 TTKFMRDPIRILVKKDELT 228
>SPAC31A2.07c |dbp10||ATP-dependent RNA helicase Dbp10
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 848
Score = 95.9 bits (228), Expect = 4e-21
Identities = 55/167 (32%), Positives = 90/167 (53%)
Frame = +1
Query: 7 ALVLAPTRELAQQIQQVASEFGNSSYVRNTCVFGGAPKREQARDLERGVEIVIATPGRLI 186
AL+L+P RELA Q +V +F + +R+ + GG EQ L +IV+ATPGR +
Sbjct: 142 ALILSPNRELALQTVKVVKDFSKGTDLRSVAIVGGVSLEEQFSLLSGKPDIVVATPGRFL 201
Query: 187 DFLEKGTTNLQRCTYLVLDEADRMLDMGFEPQIRKIIDQIRPDRQTLMWSATWPKEVRKL 366
+ L Y+V DEADR+ +MGF Q+ +I+ + RQTL++SAT P+ +
Sbjct: 202 HLKVEMKLELSSIEYVVFDEADRLFEMGFAAQLTEILHALPTSRQTLLFSATLPRTLVDF 261
Query: 367 AEDYLGDYVQINIGSLQLSANHNILQIVDVCQEHEKENKLNVLLQEI 507
A+ L D V + + ++ + ++ + E+E L +LQ+I
Sbjct: 262 AKAGLQDPVLVRL-DVESKVSADLQSAFFSVKTAEREAALLCILQDI 307
>SPAC1F7.02c |||ATP-dependent RNA helicase Has1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 578
Score = 91.1 bits (216), Expect = 1e-19
Identities = 55/124 (44%), Positives = 82/124 (66%), Gaps = 4/124 (3%)
Frame = +1
Query: 10 LVLAPTRELAQQIQQVASEFGNSSYVRNTCVFGGAPKREQARDLERGVEIVIATPGRLID 189
++++PTRELA QI VA E + V GGA +R +A L +GV +++ATPGRL+D
Sbjct: 165 IIISPTRELALQIFGVAKELLKYHHQTFGIVIGGANRRAEADKLVKGVNLLVATPGRLLD 224
Query: 190 FLE--KGTTNLQRCTYLVLDEADRMLDMGFEPQIRKIIDQIRP--DRQTLMWSATWPKEV 357
L+ KG + LV+DEADR+L++GFE ++R+I+ +I P +RQTL++SAT +V
Sbjct: 225 HLQNTKGFV-FRNLRSLVIDEADRILEIGFEDEMRQIM-KILPSENRQTLLFSATQTTKV 282
Query: 358 RKLA 369
LA
Sbjct: 283 EDLA 286
>SPBC21H7.04 |||ATP-dependent RNA helicase Dbp7 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 709
Score = 87.4 bits (207), Expect = 1e-18
Identities = 53/144 (36%), Positives = 83/144 (57%), Gaps = 17/144 (11%)
Frame = +1
Query: 7 ALVLAPTRELAQQIQQVASEFGN---SSYVRNTCVFGGAPKREQARDLERGVEIVIATPG 177
A+++APTREL QQI VA++ N S ++ + V GG K+ + + +GV I+I TPG
Sbjct: 219 AVIMAPTRELCQQIYNVANKLNNNPLSHWIVSCNVIGGEKKKSEKARIRKGVNILIGTPG 278
Query: 178 RLIDFLEK-GTTNLQRCTYLVLDEADRMLDMGFEPQIRKIIDQIR------------PDR 318
RL D LE ++ + ++VLDE DR++DMGFE + KI+ + P R
Sbjct: 279 RLADHLENTEALDVSQVRWVVLDEGDRLMDMGFEETLTKILSYLESQSSIIKKDLSIPSR 338
Query: 319 Q-TLMWSATWPKEVRKLAEDYLGD 387
+ T++ SAT V++L++ L D
Sbjct: 339 KVTMLCSATMKDTVKRLSDSALKD 362
>SPAC1F5.10 |||ATP-dependent RNA helicase, eIF4A
related|Schizosaccharomyces pombe|chr 1|||Manual
Length = 394
Score = 87.0 bits (206), Expect = 2e-18
Identities = 46/131 (35%), Positives = 71/131 (54%)
Frame = +1
Query: 7 ALVLAPTRELAQQIQQVASEFGNSSYVRNTCVFGGAPKREQARDLERGVEIVIATPGRLI 186
AL+L+PTRELA QIQ V G+ V+ GG + L+ G +V TPGR+
Sbjct: 92 ALILSPTRELAVQIQNVVLALGDHMNVQCHACIGGTSVGNDIKKLDYGQHVVSGTPGRVT 151
Query: 187 DFLEKGTTNLQRCTYLVLDEADRMLDMGFEPQIRKIIDQIRPDRQTLMWSATWPKEVRKL 366
D + + + L+LDEAD +L+ GF+ QI I + P Q ++ SAT P++V ++
Sbjct: 152 DMIRRRNLRTRNVKMLILDEADELLNQGFKEQIYDIYRYLPPGTQVVVVSATLPQDVLEM 211
Query: 367 AEDYLGDYVQI 399
+ + V+I
Sbjct: 212 TNKFTTNPVRI 222
>SPAC30D11.03 |drs1||ATP-dependent RNA helicase Drs1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 754
Score = 85.8 bits (203), Expect = 4e-18
Identities = 51/155 (32%), Positives = 83/155 (53%), Gaps = 1/155 (0%)
Frame = +1
Query: 10 LVLAPTRELAQQIQQVASEFGNSSYVRNTCVFGGAPKREQARDLERGVEIVIATPGRLID 189
L+L PTRELA Q VA++ + + + GG + Q ++L + +IVIATPGR ID
Sbjct: 334 LILCPTRELAMQCHSVATKIASFTDIMVCLCIGGLSLKLQEQELRKRPDIVIATPGRFID 393
Query: 190 FLEKGT-TNLQRCTYLVLDEADRMLDMGFEPQIRKIIDQIRPDRQTLMWSATWPKEVRKL 366
+ ++ +V+DEADRML+ GF ++ +II RQT+++SAT +V L
Sbjct: 394 HMRNSQGFTVENIEIMVMDEADRMLEDGFADELNEIIQACPKSRQTMLFSATMTDKVDDL 453
Query: 367 AEDYLGDYVQINIGSLQLSANHNILQIVDVCQEHE 471
L V++ + + + +A + V V + E
Sbjct: 454 IRLSLNRPVRVFVDNKKTTAKLLTQEFVRVRPQRE 488
>SPBC12C2.06 |||ATP-dependent RNA helicase Dbp5|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 503
Score = 81.8 bits (193), Expect = 7e-17
Identities = 58/171 (33%), Positives = 93/171 (54%), Gaps = 1/171 (0%)
Frame = +1
Query: 1 PIALVLAPTRELAQQIQQVASEFGNSSYVRNTCVFGGAPKREQARDLERGVEIVIATPGR 180
P A+ LAP+RELA+QI V +E G + V+ FG K + + +IVI TPG
Sbjct: 185 PQAICLAPSRELARQIMDVVTEMGKYTEVKTA--FG--IKDSVPKGAKIDAQIVIGTPGT 240
Query: 181 LIDFLEKGTTNLQRCTYLVLDEADRMLD-MGFEPQIRKIIDQIRPDRQTLMWSATWPKEV 357
++D +++ + + VLDEAD MLD G Q +I + + Q +++SAT+ + V
Sbjct: 241 VMDLMKRRQLDARDIKVFVLDEADNMLDQQGLGDQSMRIKHLLPRNTQIVLFSATFSERV 300
Query: 358 RKLAEDYLGDYVQINIGSLQLSANHNILQIVDVCQEHEKENKLNVLLQEIG 510
K AE + + +I + + +LS I Q+ CQ +E+K NVL++ G
Sbjct: 301 EKYAERFAPNANEIRLKTEELSV-EGIKQLYMDCQ--SEEHKYNVLVELYG 348
>SPAC1093.05 |||ATP-dependent RNA helicase Hca4 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 735
Score = 80.6 bits (190), Expect = 2e-16
Identities = 45/122 (36%), Positives = 69/122 (56%), Gaps = 1/122 (0%)
Frame = +1
Query: 7 ALVLAPTRELAQQIQQVASEFGNSSYVRNTCVFGGAPKREQARDLERGVEIVIATPGRLI 186
ALV++PTRELA Q + + G + GG +E+ L R + I++ TPGRL+
Sbjct: 114 ALVISPTRELAIQTFETLVKIGRLHSFSAGLIIGGNNYKEEKERLSR-MNILVCTPGRLL 172
Query: 187 DFLEKGTT-NLQRCTYLVLDEADRMLDMGFEPQIRKIIDQIRPDRQTLMWSATWPKEVRK 363
+++ + L+LDEADR+LDMGF + I+ + RQT+++SAT K V+
Sbjct: 173 QHIDQAVNFDTSGLQMLILDEADRILDMGFRTTLDAIVSSLPVHRQTMLFSATQTKSVKD 232
Query: 364 LA 369
LA
Sbjct: 233 LA 234
>SPBC543.06c |dbp8||ATP-dependent RNA helicase Dbp8
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 453
Score = 79.4 bits (187), Expect = 4e-16
Identities = 46/126 (36%), Positives = 71/126 (56%), Gaps = 6/126 (4%)
Frame = +1
Query: 7 ALVLAPTRELAQQIQQVASEFGNSSYVRNTCVFGGAPKREQARDLERGVEIVIATPGRLI 186
AL+L PTRELA QI + + G + +++ + GG Q+ DL + +V+ATPGRL
Sbjct: 78 ALILTPTRELAIQIDEQFAALGANLNLKHALIVGGMDMIRQSIDLSKRPHVVVATPGRLA 137
Query: 187 DFL----EKGTTNLQRCTYLVLDEADRMLDMGFEPQIRKIIDQI--RPDRQTLMWSATWP 348
D + E+ L+R +LV+DEADR+L F + + DRQTL+++AT
Sbjct: 138 DLIRSNGEETIAGLRRIKFLVMDEADRLLSPTFADDLDDCFSVLPASEDRQTLLFTATVT 197
Query: 349 KEVRKL 366
+R+L
Sbjct: 198 DAIRQL 203
>SPAC17G6.14c |uap56||ATP-dependent RNA helicase
Uap56|Schizosaccharomyces pombe|chr 1|||Manual
Length = 434
Score = 76.2 bits (179), Expect = 3e-15
Identities = 51/175 (29%), Positives = 85/175 (48%), Gaps = 5/175 (2%)
Frame = +1
Query: 10 LVLAPTRELAQQIQQVASEFGNS-SYVRNTCVFGGAPKR---EQARDLERGVEIVIATPG 177
LVL TRELA QI+ + F VR +GG + E +D + IV+ATPG
Sbjct: 123 LVLCHTRELAFQIKNEYARFSKYLPDVRTAVFYGGINIKQDMEAFKDKSKSPHIVVATPG 182
Query: 178 RLIDFLEKGTTNLQRCTYLVLDEADRMLD-MGFEPQIRKIIDQIRPDRQTLMWSATWPKE 354
RL + + + + VLDE D++L+ + I+++ P +Q +M+SAT E
Sbjct: 183 RLNALVREKILKVNSVKHFVLDECDKLLESVDMRRDIQEVFRATPPQKQVMMFSATLSNE 242
Query: 355 VRKLAEDYLGDYVQINIGSLQLSANHNILQIVDVCQEHEKENKLNVLLQEIGQNQ 519
+R + + ++ + ++I + H + Q +E K K+N LL + NQ
Sbjct: 243 IRPICKKFMQNPLEIYVDDETKLTLHGLQQHYVKLEEKAKNRKINDLLDSLEFNQ 297
>SPBC691.04 |||mitochondrial ATP-dependent RNA helicase Mss116
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 535
Score = 74.5 bits (175), Expect = 1e-14
Identities = 49/136 (36%), Positives = 74/136 (54%), Gaps = 4/136 (2%)
Frame = +1
Query: 7 ALVLAPTRELAQQIQQVASEFGNSSYVRNTCVFGGAPKREQARDLERG-VEIVIATPGRL 183
+++L+PTRELA QI + A + + +R + GG K + + RG ++IATPGRL
Sbjct: 115 SVILSPTRELALQIFEEARKLTYGTGIRVSYAIGGNSKMREENAIRRGNANLLIATPGRL 174
Query: 184 IDFLEKGTTNLQRCT-YLVLDEADRMLDMGFEPQIRKIIDQIRPDR-QTLMWSATWPKEV 357
D L+ T +LDEADR++DMGF I I + + + + L +SAT P +V
Sbjct: 175 EDHLQNPRILESLSTDSFILDEADRLMDMGFAESILNIHEAVTTTKTRKLCFSATMPPKV 234
Query: 358 RKLAEDYLG-DYVQIN 402
+ LG D+ IN
Sbjct: 235 SNVFRGILGTDFKLIN 250
>SPBC4F6.07c |||ATP-dependent RNA helicase Mak5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 648
Score = 72.1 bits (169), Expect = 6e-14
Identities = 45/125 (36%), Positives = 71/125 (56%), Gaps = 6/125 (4%)
Frame = +1
Query: 7 ALVLAPTRELAQQIQQVASEFGNSSYVRNTCVFGGAPKREQARDLERGVEIVIATPGRLI 186
ALV+APTRELA QI Q S +R + GG ++Q R L + +V+ATPGRL
Sbjct: 195 ALVVAPTRELAHQICQHFELIKPSPNIRVMSITGGLAVQKQQRLLNKHPHVVVATPGRLW 254
Query: 187 DFLEKG--TTNLQRCTYLVLDEADRMLDMGFEPQIRKIID----QIRPDRQTLMWSATWP 348
+ + T N ++ LVLDEADR+L ++ K+++ + RQT ++SAT+
Sbjct: 255 SVINENNLTGNFKKIKCLVLDEADRLLQKSHFEELSKLLEILGNPMHTQRQTFIFSATFD 314
Query: 349 KEVRK 363
+ +++
Sbjct: 315 EGLQQ 319
>SPBC24C6.02 |||ATP-dependent RNA helicase Spb4 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 606
Score = 67.3 bits (157), Expect = 2e-12
Identities = 45/122 (36%), Positives = 66/122 (54%), Gaps = 10/122 (8%)
Frame = +1
Query: 7 ALVLAPTRELAQQIQQVASEF---------GNSSYVRNTCVFG-GAPKREQARDLERGVE 156
AL++APTRELA QI V E G V + + G G + A E+
Sbjct: 75 ALIVAPTRELATQIFNVTKELLAYQPDSLDGGKKLVADMYIGGKGTLTNDLASFREKNPS 134
Query: 157 IVIATPGRLIDFLEKGTTNLQRCTYLVLDEADRMLDMGFEPQIRKIIDQIRPDRQTLMWS 336
+VI TPGRL + L ++ + L+LDEAD ++DMGF+ ++ II Q+ R+T ++S
Sbjct: 135 VVIGTPGRLNEMLSHISS--KHLEILILDEADTLIDMGFQRTLQSIISQLPKQRRTGLFS 192
Query: 337 AT 342
AT
Sbjct: 193 AT 194
>SPCC1494.06c |||ATP-dependent RNA helicase Dbp9
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 595
Score = 65.3 bits (152), Expect = 7e-12
Identities = 49/167 (29%), Positives = 79/167 (47%), Gaps = 2/167 (1%)
Frame = +1
Query: 7 ALVLAPTRELAQQIQQVASEFGN--SSYVRNTCVFGGAPKREQARDLERGVEIVIATPGR 180
AL+L PTRELAQQ+ V + S ++R V + Q L +IVIATP R
Sbjct: 91 ALLLVPTRELAQQVYNVLEKLTAFCSKHIRFINVATNSSDTVQRPLLLDLPDIVIATPSR 150
Query: 181 LIDFLEKGTTNLQRCTYLVLDEADRMLDMGFEPQIRKIIDQIRPDRQTLMWSATWPKEVR 360
+ + G L + +LV+DEAD ML G+ ++ + + Q+ + SAT K +
Sbjct: 151 CVVHVASGVLPLDKLKFLVIDEADLMLSFGYNEDMKTLSRSLPRGTQSFLMSATLSKNIA 210
Query: 361 KLAEDYLGDYVQINIGSLQLSANHNILQIVDVCQEHEKENKLNVLLQ 501
L + + + + + A+ + Q V C E +K +LL+
Sbjct: 211 SLQKLVCRNPFILAVKDKE--ASGKLTQYVVKCSEQDKFLLAYILLK 255
>SPAC22F3.08c |rok1||ATP-dependent RNA helicase Rok1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 481
Score = 60.9 bits (141), Expect = 1e-10
Identities = 40/136 (29%), Positives = 72/136 (52%), Gaps = 2/136 (1%)
Frame = +1
Query: 7 ALVLAPTRELAQQIQQVASEFGNSSYVRNTCVFGGAPK-REQARDLERGVEIVIATPGRL 183
A+++APTREL +QI + A + + ++ + K +E+A L ++ I TP RL
Sbjct: 118 AIIVAPTRELCEQIYRQAEKLSFGTSLKIIELSKSNEKIQEKAPKLREKYDMCIGTPMRL 177
Query: 184 IDFLEKGTTNLQRCTYLVLDEADRMLDMGFEPQIRKIIDQIRPDR-QTLMWSATWPKEVR 360
+ ++ G + ++ + V+DEADR+ + GF Q I+ ++SAT P V
Sbjct: 178 VQAIQTGLS-FEKVEFFVMDEADRLFEPGFIEQTDHILSACTSSNICKSLFSATIPSRVE 236
Query: 361 KLAEDYLGDYVQINIG 408
+LA+ D ++I +G
Sbjct: 237 ELAKVVTVDPIRIIVG 252
>SPCC285.03 |||ATP-dependent RNA helicase Dbp6|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 604
Score = 55.6 bits (128), Expect = 5e-09
Identities = 30/105 (28%), Positives = 58/105 (55%), Gaps = 6/105 (5%)
Frame = +1
Query: 10 LVLAPTRELAQQIQQVASEFGNSSYVRNTCVFGGAPKREQARDL-----ERGVEIVIATP 174
+V+ PTREL Q+ + + + + ++ G R + L E ++++++TP
Sbjct: 209 VVIVPTRELTVQVAKTFEYYMSGAGLQVCAWTGQKSLRHETYQLNGDENECRIDVLVSTP 268
Query: 175 GRLIDFLEKGTT-NLQRCTYLVLDEADRMLDMGFEPQIRKIIDQI 306
GRL+D + + +LQ Y+V+DEADR+LD F+ + ++ +I
Sbjct: 269 GRLVDHIRNDESFSLQHLRYMVIDEADRLLDQSFQDWVDTVMMEI 313
>SPCC417.09c |||transcription factor |Schizosaccharomyces pombe|chr
3|||Manual
Length = 767
Score = 34.7 bits (76), Expect = 0.011
Identities = 28/96 (29%), Positives = 48/96 (50%), Gaps = 1/96 (1%)
Frame = +1
Query: 133 RDLERGVEIVIATPGRLIDFLEKGTTNLQRCTYLVLDEADRMLDMGFE-PQIRKIIDQIR 309
R L++G+E VI TP RL+ ++ + NLQR +++ + M M + P + I ++
Sbjct: 135 RCLKKGLECVIETPPRLLMNKDEISLNLQRLSHMETILSKLMPSMSLDLPSLEAKIAELS 194
Query: 310 PDRQTLMWSATWPKEVRKLAEDYLGDYVQINIGSLQ 417
Q T+P +V L + LG Y Q+ + Q
Sbjct: 195 ESLQ------TYPDKV--LTDIELGSYQQVTLNETQ 222
>SPAC1805.06c |hem2||porphobilinogen synthase Hem2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 329
Score = 27.5 bits (58), Expect = 1.6
Identities = 21/67 (31%), Positives = 30/67 (44%), Gaps = 4/67 (5%)
Frame = +1
Query: 58 ASEFGNSSYVRNTCVFGGAPKREQARDLERGVEIVIATPGR-LIDFL---EKGTTNLQRC 225
A +FG+ S + C G KR RD+ G + ++ PG +D L K +L
Sbjct: 215 APKFGDRSCYQLPCNARGLAKRAILRDVREGADGIMVKPGTPYLDILAMASKLADDLPIA 274
Query: 226 TYLVLDE 246
TY V E
Sbjct: 275 TYQVSGE 281
>SPAPJ698.03c |prp12|sap130|U2 snRNP-associated protein Sap130
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1206
Score = 26.2 bits (55), Expect = 3.7
Identities = 17/51 (33%), Positives = 25/51 (49%)
Frame = +1
Query: 73 NSSYVRNTCVFGGAPKREQARDLERGVEIVIATPGRLIDFLEKGTTNLQRC 225
NS+YV+++C + K+ Q EIVIAT RL+ + T C
Sbjct: 16 NSNYVQSSCAASLSGKKAQ--------EIVIATESRLLIYKVDATDGRMNC 58
>SPAC7D4.05 |||hydrolase |Schizosaccharomyces pombe|chr 1|||Manual
Length = 225
Score = 25.8 bits (54), Expect = 4.9
Identities = 13/42 (30%), Positives = 19/42 (45%)
Frame = +1
Query: 262 DMGFEPQIRKIIDQIRPDRQTLMWSATWPKEVRKLAEDYLGD 387
D+GFE R+I D L+ P+E L +D + D
Sbjct: 157 DVGFEKPSREIFDYAMEKAVKLLGQEIQPEECMHLGDDLIKD 198
>SPAC27F1.06c |||FKBP-type peptidyl-prolyl cis-trans isomerase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 362
Score = 25.4 bits (53), Expect = 6.4
Identities = 13/48 (27%), Positives = 24/48 (50%)
Frame = +1
Query: 1 PIALVLAPTRELAQQIQQVASEFGNSSYVRNTCVFGGAPKREQARDLE 144
PI ++ +P E+ ++V + Y+ TC+ P+ E + DLE
Sbjct: 93 PIDIIFSPGEEVF--FERVGGDI--PVYLSGTCIITNIPEEEDSSDLE 136
>SPAC9.05 |mfh1||ATP-dependent DNA helicase Mfh1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 834
Score = 25.4 bits (53), Expect = 6.4
Identities = 17/80 (21%), Positives = 34/80 (42%)
Frame = +1
Query: 16 LAPTRELAQQIQQVASEFGNSSYVRNTCVFGGAPKREQARDLERGVEIVIATPGRLIDFL 195
+APT+ L Q + + + + G P + + + TP +++ +
Sbjct: 122 MAPTKPLVTQQMEACYKITGIPKSQTAELSGHVPVTTR-NQYYQSRNVFFVTPQTILNDI 180
Query: 196 EKGTTNLQRCTYLVLDEADR 255
+ G + R + LV+DEA R
Sbjct: 181 KHGICDRTRISCLVIDEAHR 200
>SPBC3D6.09 |dpb4||DNA polymerase epsilon subunit Dpb4
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 210
Score = 25.0 bits (52), Expect = 8.5
Identities = 11/17 (64%), Positives = 12/17 (70%)
Frame = +3
Query: 543 YLLKLKEKRRTLPEISD 593
Y L LKEKR LP +SD
Sbjct: 99 YELALKEKRLKLPNVSD 115
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,621,497
Number of Sequences: 5004
Number of extensions: 55583
Number of successful extensions: 210
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 177
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 184
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 264253462
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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