Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0006_D11
(602 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g55150.1 68414.m06298 DEAD box RNA helicase, putative (RH20) ... 233 9e-62
At5g63120.2 68418.m07924 ethylene-responsive DEAD box RNA helica... 225 2e-59
At5g63120.1 68418.m07925 ethylene-responsive DEAD box RNA helica... 225 2e-59
At3g06480.1 68416.m00750 DEAD box RNA helicase, putative similar... 201 3e-52
At3g01540.3 68416.m00084 DEAD box RNA helicase (DRH1) identical ... 199 1e-51
At3g01540.2 68416.m00083 DEAD box RNA helicase (DRH1) identical ... 199 1e-51
At3g01540.1 68416.m00082 DEAD box RNA helicase (DRH1) identical ... 199 1e-51
At5g14610.1 68418.m01713 DEAD box RNA helicase, putative similar... 197 5e-51
At2g47330.1 68415.m05908 DEAD/DEAH box helicase, putative simila... 165 2e-41
At3g58570.1 68416.m06528 DEAD box RNA helicase, putative similar... 161 2e-40
At2g42520.1 68415.m05262 DEAD box RNA helicase, putative similar... 160 7e-40
At1g31970.1 68414.m03931 DEAD/DEAH box helicase, putative simila... 160 7e-40
At3g58510.2 68416.m06522 DEAD box RNA helicase, putative (RH11) ... 157 4e-39
At3g58510.1 68416.m06521 DEAD box RNA helicase, putative (RH11) ... 157 4e-39
At3g09620.1 68416.m01141 DEAD/DEAH box helicase, putative simila... 156 9e-39
At1g20920.1 68414.m02619 DEAD box RNA helicase, putative similar... 154 5e-38
At2g33730.1 68415.m04134 DEAD box RNA helicase, putative similar... 132 2e-31
At5g51280.1 68418.m06357 DEAD-box protein abstrakt, putative 123 8e-29
At3g22330.1 68416.m02820 DEAD box RNA helicase, putative similar... 120 7e-28
At4g33370.1 68417.m04744 DEAD-box protein abstrakt, putative RNA... 119 1e-27
At5g26742.1 68418.m03161 DEAD box RNA helicase (RH3) nearly iden... 118 2e-27
At3g22310.1 68416.m02818 DEAD box RNA helicase, putative (RH9) s... 118 4e-27
At2g45810.1 68415.m05697 DEAD/DEAH box helicase, putative 105 2e-23
At4g00660.2 68417.m00091 DEAD/DEAH box helicase, putative simila... 105 3e-23
At4g00660.1 68417.m00090 DEAD/DEAH box helicase, putative simila... 105 3e-23
At3g61240.2 68416.m06854 DEAD/DEAH box helicase, putative (RH12)... 103 7e-23
At3g61240.1 68416.m06853 DEAD/DEAH box helicase, putative (RH12)... 103 7e-23
At3g02065.2 68416.m00170 DEAD/DEAH box helicase family protein c... 103 1e-22
At3g02065.1 68416.m00171 DEAD/DEAH box helicase family protein c... 103 1e-22
At3g13920.1 68416.m01758 eukaryotic translation initiation facto... 100 8e-22
At5g62190.1 68418.m07807 DEAD box RNA helicase (PRH75) nearly id... 99 2e-21
At1g54270.1 68414.m06187 eukaryotic translation initiation facto... 99 3e-21
At1g72730.1 68414.m08410 eukaryotic translation initiation facto... 97 6e-21
At1g77050.1 68414.m08971 DEAD/DEAH box helicase, putative simila... 97 8e-21
At1g51380.1 68414.m05780 eukaryotic translation initiation facto... 95 3e-20
At4g09730.1 68417.m01598 DEAD/DEAH box helicase, putative RNA he... 95 4e-20
At5g60990.1 68418.m07651 DEAD/DEAH box helicase, putative (RH10)... 93 2e-19
At3g19760.1 68416.m02501 eukaryotic translation initiation facto... 92 2e-19
At1g63250.1 68414.m07150 DEAD box RNA helicase, putative similar... 89 2e-18
At5g65900.1 68418.m08295 DEAD/DEAH box helicase, putative contai... 89 2e-18
At4g16630.1 68417.m02514 DEAD/DEAH box helicase, putative (RH28)... 87 6e-18
At3g18600.1 68416.m02364 DEAD/DEAH box helicase, putative non-co... 87 8e-18
At2g07750.1 68415.m01003 DEAD box RNA helicase, putative similar... 87 8e-18
At1g71370.1 68414.m08239 DEAD/DEAH box helicase, putative simila... 86 1e-17
At5g08610.1 68418.m01024 DEAD box RNA helicase (RH26) strong sim... 85 3e-17
At5g05450.1 68418.m00587 DEAD/DEAH box helicase, putative (RH18) 85 3e-17
At5g63630.1 68418.m07989 DEAD box RNA helicase, putative strong ... 84 8e-17
At1g16280.1 68414.m01949 DEAD/DEAH box helicase, putative simila... 83 1e-16
At5g11200.1 68418.m01309 DEAD/DEAH box helicase, putative 83 2e-16
At5g11170.2 68418.m01306 DEAD/DEAH box helicase, putative (RH15)... 82 2e-16
At5g11170.1 68418.m01305 DEAD/DEAH box helicase, putative (RH15)... 82 2e-16
At5g54910.1 68418.m06839 DEAD/DEAH box helicase, putative 79 2e-15
At5g08620.1 68418.m01025 DEAD box RNA helicase (RH25) identical ... 77 9e-15
At2g40700.1 68415.m05021 DEAD/DEAH box helicase, putative (RH17)... 73 2e-13
At3g06980.1 68416.m00829 DEAD/DEAH box helicase, putative contai... 71 8e-13
At3g16840.1 68416.m02150 DEAD/DEAH box helicase, putative (RH13)... 70 1e-12
At1g71280.1 68414.m08226 DEAD/DEAH box helicase, putative contai... 70 1e-12
At1g12770.1 68414.m01482 DEAD/DEAH box helicase family protein /... 63 2e-10
At3g53110.1 68416.m05853 DEAD/DEAH box helicase, putative RNA he... 62 2e-10
At2g28600.1 68415.m03476 expressed protein 58 3e-09
At3g09720.1 68416.m01151 DEAD/DEAH box helicase, putative simila... 56 1e-08
At4g34910.1 68417.m04950 DEAD/DEAH box helicase, putative (RH16)... 52 4e-07
At4g15850.1 68417.m02410 DEAD/DEAH box helicase, putative simila... 49 3e-06
At1g59990.1 68414.m06758 DEAD/DEAH box helicase, putative (RH22)... 42 2e-04
At5g19210.2 68418.m02287 DEAD/DEAH box helicase, putative EUKARY... 40 0.002
At1g62440.1 68414.m07044 leucine-rich repeat family protein / ex... 31 0.44
At4g12200.1 68417.m01937 zinc knuckle (CCHC-type) family protein... 30 1.4
At1g15820.1 68414.m01898 chlorophyll A-B binding protein, chloro... 29 1.8
At5g19210.1 68418.m02288 DEAD/DEAH box helicase, putative EUKARY... 29 2.4
At5g14860.1 68418.m01743 UDP-glucoronosyl/UDP-glucosyl transfera... 29 3.1
At3g60970.1 68416.m06823 ABC transporter family protein ABC tran... 29 3.1
At3g60160.1 68416.m06717 ABC transporter family protein similar ... 29 3.1
At3g23010.1 68416.m02901 disease resistance family protein / LRR... 28 4.1
At2g45000.1 68415.m05603 expressed protein contains Pfam profile... 28 5.5
At1g12040.1 68414.m01390 leucine-rich repeat family protein / ex... 28 5.5
At5g27300.1 68418.m03260 pentatricopeptide (PPR) repeat-containi... 27 7.2
At5g19310.1 68418.m02301 homeotic gene regulator, putative simil... 27 7.2
At2g27800.1 68415.m03370 pentatricopeptide (PPR) repeat-containi... 27 7.2
At4g13340.1 68417.m02084 leucine-rich repeat family protein / ex... 27 9.6
>At1g55150.1 68414.m06298 DEAD box RNA helicase, putative (RH20)
similar to ethylene-responsive RNA helicase GI:5669638
from [Lycopersicon esculentum]; contains Pfam profiles
PF00270: DEAD/DEAH box helicase, PF00271: Helicase
conserved C-terminal domain
Length = 501
Score = 233 bits (569), Expect = 9e-62
Identities = 112/169 (66%), Positives = 134/169 (79%)
Frame = +1
Query: 1 PIALVLAPTRELAQQIQQVASEFGNSSYVRNTCVFGGAPKREQARDLERGVEIVIATPGR 180
PI LVLAPTRELA QIQQ AS+FG+SS ++ TC++GG PK Q RDL++GVEIVIATPGR
Sbjct: 173 PIVLVLAPTRELAVQIQQEASKFGSSSKIKTTCIYGGVPKGPQVRDLQKGVEIVIATPGR 232
Query: 181 LIDFLEKGTTNLQRCTYLVLDEADRMLDMGFEPQIRKIIDQIRPDRQTLMWSATWPKEVR 360
LID +E TNL+R TYLVLDEADRMLDMGF+PQIRKI+ IRPDRQTL WSATWPKEV
Sbjct: 233 LIDMMESNNTNLRRVTYLVLDEADRMLDMGFDPQIRKIVSHIRPDRQTLYWSATWPKEVE 292
Query: 361 KLAEDYLGDYVQINIGSLQLSANHNILQIVDVCQEHEKENKLNVLLQEI 507
+L++ +L + ++ IGS L AN I QIVDV E +K NKL LL++I
Sbjct: 293 QLSKKFLYNPYKVIIGSSDLKANRAIRQIVDVISESQKYNKLVKLLEDI 341
>At5g63120.2 68418.m07924 ethylene-responsive DEAD box RNA helicase,
putative (RH30) strong similarity to ethylene-responsive
RNA helicase [Lycopersicon esculentum] GI:5669638;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain
Length = 591
Score = 225 bits (549), Expect = 2e-59
Identities = 109/169 (64%), Positives = 131/169 (77%)
Frame = +1
Query: 1 PIALVLAPTRELAQQIQQVASEFGNSSYVRNTCVFGGAPKREQARDLERGVEIVIATPGR 180
PI L+LAPTRELA QIQ+ + +FG S VR+TC++GGAPK Q RDL RGVEIVIATPGR
Sbjct: 239 PIVLILAPTRELAVQIQEESRKFGLRSGVRSTCIYGGAPKGPQIRDLRRGVEIVIATPGR 298
Query: 181 LIDFLEKGTTNLQRCTYLVLDEADRMLDMGFEPQIRKIIDQIRPDRQTLMWSATWPKEVR 360
LID LE TNL+R TYLVLDEADRMLDMGFEPQIRKI+ QIRPDRQTL+WSATWP+EV
Sbjct: 299 LIDMLECQHTNLKRVTYLVLDEADRMLDMGFEPQIRKIVSQIRPDRQTLLWSATWPREVE 358
Query: 361 KLAEDYLGDYVQINIGSLQLSANHNILQIVDVCQEHEKENKLNVLLQEI 507
LA +L D + IGS L AN +I Q++++ EK N+L LL+++
Sbjct: 359 TLARQFLRDPYKAIIGSTDLKANQSINQVIEIVPTPEKYNRLLTLLKQL 407
Score = 27.9 bits (59), Expect = 5.5
Identities = 11/23 (47%), Positives = 16/23 (69%)
Frame = +2
Query: 533 RTIIFVETKRKAENITRNIRRYG 601
+ +IFVETKR + +TR +R G
Sbjct: 412 KILIFVETKRGCDQVTRQLRMDG 434
>At5g63120.1 68418.m07925 ethylene-responsive DEAD box RNA helicase,
putative (RH30) strong similarity to ethylene-responsive
RNA helicase [Lycopersicon esculentum] GI:5669638;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain
Length = 484
Score = 225 bits (549), Expect = 2e-59
Identities = 109/169 (64%), Positives = 131/169 (77%)
Frame = +1
Query: 1 PIALVLAPTRELAQQIQQVASEFGNSSYVRNTCVFGGAPKREQARDLERGVEIVIATPGR 180
PI L+LAPTRELA QIQ+ + +FG S VR+TC++GGAPK Q RDL RGVEIVIATPGR
Sbjct: 239 PIVLILAPTRELAVQIQEESRKFGLRSGVRSTCIYGGAPKGPQIRDLRRGVEIVIATPGR 298
Query: 181 LIDFLEKGTTNLQRCTYLVLDEADRMLDMGFEPQIRKIIDQIRPDRQTLMWSATWPKEVR 360
LID LE TNL+R TYLVLDEADRMLDMGFEPQIRKI+ QIRPDRQTL+WSATWP+EV
Sbjct: 299 LIDMLECQHTNLKRVTYLVLDEADRMLDMGFEPQIRKIVSQIRPDRQTLLWSATWPREVE 358
Query: 361 KLAEDYLGDYVQINIGSLQLSANHNILQIVDVCQEHEKENKLNVLLQEI 507
LA +L D + IGS L AN +I Q++++ EK N+L LL+++
Sbjct: 359 TLARQFLRDPYKAIIGSTDLKANQSINQVIEIVPTPEKYNRLLTLLKQL 407
Score = 27.9 bits (59), Expect = 5.5
Identities = 11/23 (47%), Positives = 16/23 (69%)
Frame = +2
Query: 533 RTIIFVETKRKAENITRNIRRYG 601
+ +IFVETKR + +TR +R G
Sbjct: 412 KILIFVETKRGCDQVTRQLRMDG 434
>At3g06480.1 68416.m00750 DEAD box RNA helicase, putative similar to
RNA helicase DRH1 [Arabidopsis thaliana] GI:3149952;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain, PF00397:
WW domain
Length = 1088
Score = 201 bits (490), Expect = 3e-52
Identities = 103/184 (55%), Positives = 134/184 (72%), Gaps = 1/184 (0%)
Frame = +1
Query: 1 PIALVLAPTRELAQQIQQVASEFGNSSYVRNTCVFGGAPKREQARDLERGVEIVIATPGR 180
P L+LAPTRELA QIQ A FG SS + TC++GGAPK Q ++LERG +IV+ATPGR
Sbjct: 508 PTVLILAPTRELATQIQDEALRFGRSSRISCTCLYGGAPKGPQLKELERGADIVVATPGR 567
Query: 181 LIDFLEKGTTNLQRCTYLVLDEADRMLDMGFEPQIRKIIDQIRPDRQTLMWSATWPKEVR 360
L D LE + Q+ + LVLDEADRMLDMGFEPQIRKI+++I P RQTLM++ATWPKEVR
Sbjct: 568 LNDILEMKMIDFQQVSLLVLDEADRMLDMGFEPQIRKIVNEIPPRRQTLMYTATWPKEVR 627
Query: 361 KLAEDYLGDYVQINIGSL-QLSANHNILQIVDVCQEHEKENKLNVLLQEIGQNQDPGAKD 537
K+A D L + VQ+NIG + +L+AN I Q V+V + EKE + L++I ++Q+ G+K
Sbjct: 628 KIASDLLVNPVQVNIGRVDELAANKAITQYVEVVPQMEKERR----LEQILRSQERGSKV 683
Query: 538 HYIC 549
C
Sbjct: 684 IIFC 687
>At3g01540.3 68416.m00084 DEAD box RNA helicase (DRH1) identical to
RNA helicase DRH1 GB:BAA28347 GI:3149952 [Arabidopsis
thaliana]; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 619
Score = 199 bits (486), Expect = 1e-51
Identities = 102/184 (55%), Positives = 135/184 (73%), Gaps = 1/184 (0%)
Frame = +1
Query: 1 PIALVLAPTRELAQQIQQVASEFGNSSYVRNTCVFGGAPKREQARDLERGVEIVIATPGR 180
P LVL+PTRELA QIQ+ A +FG SS + TC++GGAPK Q RDLERG +IV+ATPGR
Sbjct: 231 PTILVLSPTRELATQIQEEAVKFGRSSRISCTCLYGGAPKGPQLRDLERGADIVVATPGR 290
Query: 181 LIDFLEKGTTNLQRCTYLVLDEADRMLDMGFEPQIRKIIDQIRPDRQTLMWSATWPKEVR 360
L D LE +L++ +YLVLDEADRMLDMGFEPQIRKI+ +I RQTLM++ATWPK VR
Sbjct: 291 LNDILEMRRISLRQISYLVLDEADRMLDMGFEPQIRKIVKEIPTKRQTLMYTATWPKGVR 350
Query: 361 KLAEDYLGDYVQINIGSL-QLSANHNILQIVDVCQEHEKENKLNVLLQEIGQNQDPGAKD 537
K+A D L + Q+NIG++ +L AN +I Q ++V EK+ + L++I ++Q+PG+K
Sbjct: 351 KIAADLLVNPAQVNIGNVDELVANKSITQHIEVVAPMEKQRR----LEQILRSQEPGSKV 406
Query: 538 HYIC 549
C
Sbjct: 407 IIFC 410
>At3g01540.2 68416.m00083 DEAD box RNA helicase (DRH1) identical to
RNA helicase DRH1 GB:BAA28347 GI:3149952 [Arabidopsis
thaliana]; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 619
Score = 199 bits (486), Expect = 1e-51
Identities = 102/184 (55%), Positives = 135/184 (73%), Gaps = 1/184 (0%)
Frame = +1
Query: 1 PIALVLAPTRELAQQIQQVASEFGNSSYVRNTCVFGGAPKREQARDLERGVEIVIATPGR 180
P LVL+PTRELA QIQ+ A +FG SS + TC++GGAPK Q RDLERG +IV+ATPGR
Sbjct: 231 PTILVLSPTRELATQIQEEAVKFGRSSRISCTCLYGGAPKGPQLRDLERGADIVVATPGR 290
Query: 181 LIDFLEKGTTNLQRCTYLVLDEADRMLDMGFEPQIRKIIDQIRPDRQTLMWSATWPKEVR 360
L D LE +L++ +YLVLDEADRMLDMGFEPQIRKI+ +I RQTLM++ATWPK VR
Sbjct: 291 LNDILEMRRISLRQISYLVLDEADRMLDMGFEPQIRKIVKEIPTKRQTLMYTATWPKGVR 350
Query: 361 KLAEDYLGDYVQINIGSL-QLSANHNILQIVDVCQEHEKENKLNVLLQEIGQNQDPGAKD 537
K+A D L + Q+NIG++ +L AN +I Q ++V EK+ + L++I ++Q+PG+K
Sbjct: 351 KIAADLLVNPAQVNIGNVDELVANKSITQHIEVVAPMEKQRR----LEQILRSQEPGSKV 406
Query: 538 HYIC 549
C
Sbjct: 407 IIFC 410
>At3g01540.1 68416.m00082 DEAD box RNA helicase (DRH1) identical to
RNA helicase DRH1 GB:BAA28347 GI:3149952 [Arabidopsis
thaliana]; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 618
Score = 199 bits (486), Expect = 1e-51
Identities = 102/184 (55%), Positives = 135/184 (73%), Gaps = 1/184 (0%)
Frame = +1
Query: 1 PIALVLAPTRELAQQIQQVASEFGNSSYVRNTCVFGGAPKREQARDLERGVEIVIATPGR 180
P LVL+PTRELA QIQ+ A +FG SS + TC++GGAPK Q RDLERG +IV+ATPGR
Sbjct: 231 PTILVLSPTRELATQIQEEAVKFGRSSRISCTCLYGGAPKGPQLRDLERGADIVVATPGR 290
Query: 181 LIDFLEKGTTNLQRCTYLVLDEADRMLDMGFEPQIRKIIDQIRPDRQTLMWSATWPKEVR 360
L D LE +L++ +YLVLDEADRMLDMGFEPQIRKI+ +I RQTLM++ATWPK VR
Sbjct: 291 LNDILEMRRISLRQISYLVLDEADRMLDMGFEPQIRKIVKEIPTKRQTLMYTATWPKGVR 350
Query: 361 KLAEDYLGDYVQINIGSL-QLSANHNILQIVDVCQEHEKENKLNVLLQEIGQNQDPGAKD 537
K+A D L + Q+NIG++ +L AN +I Q ++V EK+ + L++I ++Q+PG+K
Sbjct: 351 KIAADLLVNPAQVNIGNVDELVANKSITQHIEVVAPMEKQRR----LEQILRSQEPGSKV 406
Query: 538 HYIC 549
C
Sbjct: 407 IIFC 410
>At5g14610.1 68418.m01713 DEAD box RNA helicase, putative similar to
RNA helicase DRH1 [Arabidopsis thaliana] GI:3149952;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain, PF00397:
WW domain
Length = 713
Score = 197 bits (480), Expect = 5e-51
Identities = 99/184 (53%), Positives = 135/184 (73%), Gaps = 1/184 (0%)
Frame = +1
Query: 1 PIALVLAPTRELAQQIQQVASEFGNSSYVRNTCVFGGAPKREQARDLERGVEIVIATPGR 180
P LVL+PTRELA QIQ A +FG SS + C++GGAPK Q +++ERGV+IV+ATPGR
Sbjct: 302 PTILVLSPTRELATQIQVEALKFGKSSKISCACLYGGAPKGPQLKEIERGVDIVVATPGR 361
Query: 181 LIDFLEKGTTNLQRCTYLVLDEADRMLDMGFEPQIRKIIDQIRPDRQTLMWSATWPKEVR 360
L D LE +L + +YLVLDEADRMLDMGFEPQIRKI++++ RQTLM++ATWPKEVR
Sbjct: 362 LNDILEMKRISLHQVSYLVLDEADRMLDMGFEPQIRKIVNEVPTKRQTLMYTATWPKEVR 421
Query: 361 KLAEDYLGDYVQINIGSL-QLSANHNILQIVDVCQEHEKENKLNVLLQEIGQNQDPGAKD 537
K+A D L + Q+NIG++ +L AN +I Q ++V EK ++ L++I ++Q+PG+K
Sbjct: 422 KIAADLLVNPAQVNIGNVDELVANKSITQTIEVLAPMEKHSR----LEQILRSQEPGSKI 477
Query: 538 HYIC 549
C
Sbjct: 478 IIFC 481
>At2g47330.1 68415.m05908 DEAD/DEAH box helicase, putative similar
to RNA helicase [Rattus norvegicus] GI:897915; contains
Pfam profiles PF00270: DEAD/DEAH box helicase, PF00271:
Helicase conserved C-terminal domain
Length = 760
Score = 165 bits (402), Expect = 2e-41
Identities = 85/176 (48%), Positives = 119/176 (67%)
Frame = +1
Query: 1 PIALVLAPTRELAQQIQQVASEFGNSSYVRNTCVFGGAPKREQARDLERGVEIVIATPGR 180
PI ++ APTRELA QI A +F + +R + V+GG K EQ ++L+ G EIV+ATPGR
Sbjct: 302 PIGVICAPTRELAHQIFLEAKKFSKAYGLRVSAVYGGMSKHEQFKELKAGCEIVVATPGR 361
Query: 181 LIDFLEKGTTNLQRCTYLVLDEADRMLDMGFEPQIRKIIDQIRPDRQTLMWSATWPKEVR 360
LID L+ + R +YLVLDEADRM D+GFEPQ+R I+ QIRPDRQTL++SAT P +V
Sbjct: 362 LIDMLKMKALTMMRASYLVLDEADRMFDLGFEPQVRSIVGQIRPDRQTLLFSATMPWKVE 421
Query: 361 KLAEDYLGDYVQINIGSLQLSANHNILQIVDVCQEHEKENKLNVLLQEIGQNQDPG 528
KLA + L D +++ +G + + AN +I Q+V+V + KL LL+++ D G
Sbjct: 422 KLAREILSDPIRVTVGEVGM-ANEDITQVVNVIPSDAE--KLPWLLEKLPGMIDEG 474
>At3g58570.1 68416.m06528 DEAD box RNA helicase, putative similar to
SP|O00571 DEAD-box protein 3 (Helicase-like protein 2)
{Homo sapiens}, DEAD box RNA helicase DDX3 [Homo
sapiens] GI:3523150; contains Pfam profiles PF00270:
DEAD/DEAH box helicase, PF00271: Helicase conserved
C-terminal domain
Length = 646
Score = 161 bits (392), Expect = 2e-40
Identities = 83/180 (46%), Positives = 123/180 (68%), Gaps = 4/180 (2%)
Frame = +1
Query: 1 PIALVLAPTRELAQQIQQVASEFGNSSYVRNTCVFGGAPKREQARDLERGVEIVIATPGR 180
P+A++L+PTRELA QI A +F + V+ +GG P +Q R+LERGV+I++ATPGR
Sbjct: 225 PLAVILSPTRELACQIHDEARKFSYQTGVKVVVAYGGTPVNQQIRELERGVDILVATPGR 284
Query: 181 LIDFLEKGTTNLQRCTYLVLDEADRMLDMGFEPQIRKIIDQI-RPD---RQTLMWSATWP 348
L D LE+G +LQ +L LDEADRMLDMGFEPQIRKI+ Q+ P RQT+++SAT+P
Sbjct: 285 LNDLLERGRVSLQMVRFLALDEADRMLDMGFEPQIRKIVQQMDMPPPGVRQTMLFSATFP 344
Query: 349 KEVRKLAEDYLGDYVQINIGSLQLSANHNILQIVDVCQEHEKENKLNVLLQEIGQNQDPG 528
+E+++LA D+L +Y+ + +G + S+ I+Q V+ + +K + L LL +N + G
Sbjct: 345 REIQRLASDFLSNYIFLAVGRVG-SSTDLIVQRVEFVHDSDKRSHLMDLLHAQRENGNQG 403
>At2g42520.1 68415.m05262 DEAD box RNA helicase, putative similar to
SP|O00571 DEAD-box protein 3 (Helicase-like protein 2)
{Homo sapiens}, DEAD box RNA helicase DDX3 [Homo
sapiens] GI:3523150; contains Pfam profiles PF00270:
DEAD/DEAH box helicase, PF00271: Helicase conserved
C-terminal domain
Length = 633
Score = 160 bits (388), Expect = 7e-40
Identities = 81/176 (46%), Positives = 121/176 (68%), Gaps = 4/176 (2%)
Frame = +1
Query: 1 PIALVLAPTRELAQQIQQVASEFGNSSYVRNTCVFGGAPKREQARDLERGVEIVIATPGR 180
P+A++L+PTRELA QI A +F + V+ +GG P +Q R+LERGV+I++ATPGR
Sbjct: 238 PLAVILSPTRELASQIHDEAKKFSYQTGVKVVVAYGGTPINQQLRELERGVDILVATPGR 297
Query: 181 LIDFLEKGTTNLQRCTYLVLDEADRMLDMGFEPQIRKIIDQI----RPDRQTLMWSATWP 348
L D LE+ ++Q +L LDEADRMLDMGFEPQIRKI++Q+ R RQTL++SAT+P
Sbjct: 298 LNDLLERARVSMQMIRFLALDEADRMLDMGFEPQIRKIVEQMDMPPRGVRQTLLFSATFP 357
Query: 349 KEVRKLAEDYLGDYVQINIGSLQLSANHNILQIVDVCQEHEKENKLNVLLQEIGQN 516
+E+++LA D+L +Y+ + +G + S+ I+Q V+ + +K + L LL +N
Sbjct: 358 REIQRLAADFLANYIFLAVGRVG-SSTDLIVQRVEFVLDSDKRSHLMDLLHAQREN 412
>At1g31970.1 68414.m03931 DEAD/DEAH box helicase, putative similar
to p68 RNA helicase [Schizosaccharomyces pombe]
GI:173419
Length = 537
Score = 160 bits (388), Expect = 7e-40
Identities = 77/174 (44%), Positives = 116/174 (66%), Gaps = 1/174 (0%)
Frame = +1
Query: 1 PIALVLAPTRELAQQIQQVASEFGNSSYVRNTCVFGGAPKREQARDLERGVEIVIATPGR 180
P LVL+PTRELA QI V E G +++ CV+GG+ K Q + GV+IVI TPGR
Sbjct: 192 PTCLVLSPTRELAVQISDVLREAGEPCGLKSICVYGGSSKGPQISAIRSGVDIVIGTPGR 251
Query: 181 LIDFLEKGTTNLQRCTYLVLDEADRMLDMGFEPQIRKIIDQIRPDRQTLMWSATWPKEVR 360
L D +E L +++VLDEADRMLDMGFE +R I+ RQ +M+SATWP +V
Sbjct: 252 LRDLIESNVLRLSDVSFVVLDEADRMLDMGFEEPVRFILSNTNKVRQMVMFSATWPLDVH 311
Query: 361 KLAEDYLG-DYVQINIGSLQLSANHNILQIVDVCQEHEKENKLNVLLQEIGQNQ 519
KLA++++ + +++ IGS+ L+ANH+++QI++V E ++ +L LL++ ++Q
Sbjct: 312 KLAQEFMDPNPIKVIIGSVDLAANHDVMQIIEVLDERARDQRLIALLEKYHKSQ 365
>At3g58510.2 68416.m06522 DEAD box RNA helicase, putative (RH11)
similar to RNA helicase DBY protein [Mus musculus]
GI:3790186, SP|O00571 DEAD-box protein 3 (Helicase-like
protein 2) {Homo sapiens}; contains Pfam profiles
PF00270: DEAD/DEAH box helicase, PF00271: Helicase
conserved C-terminal domain; identical to cDNA DEAD box
RNA helicase, RH11 GI:3775998
Length = 612
Score = 157 bits (382), Expect = 4e-39
Identities = 80/178 (44%), Positives = 119/178 (66%), Gaps = 4/178 (2%)
Frame = +1
Query: 1 PIALVLAPTRELAQQIQQVASEFGNSSYVRNTCVFGGAPKREQARDLERGVEIVIATPGR 180
P A++L+PTRELA QI A +F + V+ +GG P +Q R+LERG +I++ATPGR
Sbjct: 230 PFAVILSPTRELACQIHDEAKKFSYQTGVKVVVAYGGTPIHQQLRELERGCDILVATPGR 289
Query: 181 LIDFLEKGTTNLQRCTYLVLDEADRMLDMGFEPQIRKIIDQI----RPDRQTLMWSATWP 348
L D LE+ ++Q +L LDEADRMLDMGFEPQIRKI++Q+ R RQT+++SAT+P
Sbjct: 290 LNDLLERARVSMQMIRFLALDEADRMLDMGFEPQIRKIVEQMDMPPRGVRQTMLFSATFP 349
Query: 349 KEVRKLAEDYLGDYVQINIGSLQLSANHNILQIVDVCQEHEKENKLNVLLQEIGQNQD 522
++++LA D++ +Y+ + +G + S+ I Q V+ QE +K + L LL + QD
Sbjct: 350 SQIQRLAADFMSNYIFLAVGRVG-SSTDLITQRVEFVQESDKRSHLMDLLHAQRETQD 406
>At3g58510.1 68416.m06521 DEAD box RNA helicase, putative (RH11)
similar to RNA helicase DBY protein [Mus musculus]
GI:3790186, SP|O00571 DEAD-box protein 3 (Helicase-like
protein 2) {Homo sapiens}; contains Pfam profiles
PF00270: DEAD/DEAH box helicase, PF00271: Helicase
conserved C-terminal domain; identical to cDNA DEAD box
RNA helicase, RH11 GI:3775998
Length = 612
Score = 157 bits (382), Expect = 4e-39
Identities = 80/178 (44%), Positives = 119/178 (66%), Gaps = 4/178 (2%)
Frame = +1
Query: 1 PIALVLAPTRELAQQIQQVASEFGNSSYVRNTCVFGGAPKREQARDLERGVEIVIATPGR 180
P A++L+PTRELA QI A +F + V+ +GG P +Q R+LERG +I++ATPGR
Sbjct: 230 PFAVILSPTRELACQIHDEAKKFSYQTGVKVVVAYGGTPIHQQLRELERGCDILVATPGR 289
Query: 181 LIDFLEKGTTNLQRCTYLVLDEADRMLDMGFEPQIRKIIDQI----RPDRQTLMWSATWP 348
L D LE+ ++Q +L LDEADRMLDMGFEPQIRKI++Q+ R RQT+++SAT+P
Sbjct: 290 LNDLLERARVSMQMIRFLALDEADRMLDMGFEPQIRKIVEQMDMPPRGVRQTMLFSATFP 349
Query: 349 KEVRKLAEDYLGDYVQINIGSLQLSANHNILQIVDVCQEHEKENKLNVLLQEIGQNQD 522
++++LA D++ +Y+ + +G + S+ I Q V+ QE +K + L LL + QD
Sbjct: 350 SQIQRLAADFMSNYIFLAVGRVG-SSTDLITQRVEFVQESDKRSHLMDLLHAQRETQD 406
>At3g09620.1 68416.m01141 DEAD/DEAH box helicase, putative similar
to RNA helicase GB:A57514 GI:897915 from [Rattus
norvegicus]; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain
Length = 989
Score = 156 bits (379), Expect = 9e-39
Identities = 82/171 (47%), Positives = 114/171 (66%), Gaps = 3/171 (1%)
Frame = +1
Query: 1 PIALVLAPTRELAQQIQQVASEFGNSSYVRNTCVFGGAPKREQARDLERGVEIVIATPGR 180
PI LV+APTREL QQI +F + + V+GG+ +Q +L+RG EIV+ TPGR
Sbjct: 470 PIGLVMAPTRELVQQIYSDIRKFSKALGIICVPVYGGSGVAQQISELKRGTEIVVCTPGR 529
Query: 181 LIDFLEKGT---TNLQRCTYLVLDEADRMLDMGFEPQIRKIIDQIRPDRQTLMWSATWPK 351
+ID L + TNL+R TYLV+DEADRM DMGFEPQI +I+ IRPDRQT+++SAT+P+
Sbjct: 530 MIDILCTSSGKITNLRRVTYLVMDEADRMFDMGFEPQITRIVQNIRPDRQTVLFSATFPR 589
Query: 352 EVRKLAEDYLGDYVQINIGSLQLSANHNILQIVDVCQEHEKENKLNVLLQE 504
+V LA L V+I +G + N +I Q+V++ E E+ ++L LL E
Sbjct: 590 QVETLARKVLNKPVEIQVGGRSV-VNKDITQLVEIRPESERFSRLLELLGE 639
>At1g20920.1 68414.m02619 DEAD box RNA helicase, putative similar to
RNA helicase [Rattus norvegicus] GI:897915; contains Pfam
profiles PF00270: DEAD/DEAH box helicase, PF00271:
Helicase conserved C-terminal domain
Length = 1166
Score = 154 bits (373), Expect = 5e-38
Identities = 82/171 (47%), Positives = 113/171 (66%), Gaps = 3/171 (1%)
Frame = +1
Query: 1 PIALVLAPTRELAQQIQQVASEFGNSSYVRNTCVFGGAPKREQARDLERGVEIVIATPGR 180
PI LV+APTREL QQI +F +R V+GG+ +Q +L+RG EIV+ TPGR
Sbjct: 603 PIGLVMAPTRELVQQIHSDIRKFSKPLGIRCVPVYGGSGVAQQISELKRGTEIVVCTPGR 662
Query: 181 LIDFLEKGT---TNLQRCTYLVLDEADRMLDMGFEPQIRKIIDQIRPDRQTLMWSATWPK 351
+ID L + TNL+R T+LV+DEADRM DMGFEPQI +II IRP+RQT+++SAT+P+
Sbjct: 663 MIDILCTSSGKITNLRRVTFLVMDEADRMFDMGFEPQITRIIQNIRPERQTVLFSATFPR 722
Query: 352 EVRKLAEDYLGDYVQINIGSLQLSANHNILQIVDVCQEHEKENKLNVLLQE 504
+V LA L V+I +G + N +I Q+V+V E ++ +L LL E
Sbjct: 723 QVETLARKVLNKPVEIQVGGRSV-VNKDITQLVEVRPESDRFLRLLELLGE 772
>At2g33730.1 68415.m04134 DEAD box RNA helicase, putative similar to
SP|P23394 Pre-mRNA splicing factor RNA helicase PRP28
{Saccharomyces cerevisiae}; contains Pfam profiles
PF00270: DEAD/DEAH box helicase, PF00271: Helicase
conserved C-terminal domain
Length = 733
Score = 132 bits (319), Expect = 2e-31
Identities = 81/188 (43%), Positives = 112/188 (59%), Gaps = 17/188 (9%)
Frame = +1
Query: 1 PIALVLAPTRELAQQIQQVASEFGNSSYVRNTCVFGGAPKREQARDLERGVEIVIATPGR 180
P A+V+APTRELAQQI++ +F + R T + GG EQ + +G EIVIATPGR
Sbjct: 390 PYAVVMAPTRELAQQIEEETVKFAHYLGFRVTSIVGGQSIEEQGLKITQGCEIVIATPGR 449
Query: 181 LIDFLEKGTTNLQRCTYLVLDEADRMLDMGFEPQIRKIID-----QIRPD---------- 315
LID LE+ L +C Y+VLDEADRM+DMGFEPQ+ ++D ++P+
Sbjct: 450 LIDCLERRYAVLNQCNYVVLDEADRMIDMGFEPQVAGVLDAMPSSNLKPENEEEELDEKK 509
Query: 316 --RQTLMWSATWPKEVRKLAEDYLGDYVQINIGSLQLSANHNILQIVDVCQEHEKENKLN 489
R T M+SAT P V +LA YL + V + IG+ + + I Q V + +E EK +L
Sbjct: 510 IYRTTYMFSATMPPGVERLARKYLRNPVVVTIGTAGKTTD-LISQHVIMMKESEKFFRLQ 568
Query: 490 VLLQEIGQ 513
LL E+G+
Sbjct: 569 KLLDELGE 576
>At5g51280.1 68418.m06357 DEAD-box protein abstrakt, putative
Length = 591
Score = 123 bits (297), Expect = 8e-29
Identities = 66/164 (40%), Positives = 99/164 (60%), Gaps = 6/164 (3%)
Frame = +1
Query: 1 PIALVLAPTRELAQQIQQVASEFG----NSSY--VRNTCVFGGAPKREQARDLERGVEIV 162
PI L++ P+RELA+Q +V +F + Y +R+ GG R Q ++RGV IV
Sbjct: 223 PIGLIVCPSRELARQTYEVVEQFVAPLVEAGYPPLRSLLCIGGIDMRSQLEVVKRGVHIV 282
Query: 163 IATPGRLIDFLEKGTTNLQRCTYLVLDEADRMLDMGFEPQIRKIIDQIRPDRQTLMWSAT 342
+ATPGRL D L K +L C YL LDEADR++D+GFE IR++ D + RQTL++SAT
Sbjct: 283 VATPGRLKDMLAKKKMSLDACRYLTLDEADRLVDLGFEDDIREVFDHFKSQRQTLLFSAT 342
Query: 343 WPKEVRKLAEDYLGDYVQINIGSLQLSANHNILQIVDVCQEHEK 474
P +++ A L V +N+G +AN +++Q V+ ++ K
Sbjct: 343 MPTKIQIFARSALVKPVTVNVGRAG-AANLDVIQEVEYVKQEAK 385
>At3g22330.1 68416.m02820 DEAD box RNA helicase, putative similar to
RNA helicases GI:3775995, GI:3775987 from [Arabidopsis
thaliana]; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 616
Score = 120 bits (289), Expect = 7e-28
Identities = 56/136 (41%), Positives = 93/136 (68%), Gaps = 1/136 (0%)
Frame = +1
Query: 1 PIALVLAPTRELAQQIQQVASEFGNSSYVRNT-CVFGGAPKREQARDLERGVEIVIATPG 177
P+ LVLAPTRELA+Q+++ EF S+ +T C++GG P +Q R L+ GV++ + TPG
Sbjct: 179 PLCLVLAPTRELARQVEK---EFRESAPSLDTICLYGGTPIGQQMRQLDYGVDVAVGTPG 235
Query: 178 RLIDFLEKGTTNLQRCTYLVLDEADRMLDMGFEPQIRKIIDQIRPDRQTLMWSATWPKEV 357
R+ID +++G NL ++VLDEAD+ML +GF + I++++ RQ++M+SAT P +
Sbjct: 236 RVIDLMKRGALNLSEVQFVVLDEADQMLQVGFAEDVEIILEKLPEKRQSMMFSATMPSWI 295
Query: 358 RKLAEDYLGDYVQINI 405
R L + YL + + +++
Sbjct: 296 RSLTKKYLNNPLTVDL 311
>At4g33370.1 68417.m04744 DEAD-box protein abstrakt, putative RNA
helicase DBP2 - Saccharomyces cerevisiae, PID:g5272
Length = 542
Score = 119 bits (287), Expect = 1e-27
Identities = 67/164 (40%), Positives = 97/164 (59%), Gaps = 6/164 (3%)
Frame = +1
Query: 1 PIALVLAPTRELAQQIQQVASEFGNS----SY--VRNTCVFGGAPKREQARDLERGVEIV 162
PIALV+ P+RELA+Q V +F S Y +R+ GG R Q +++GV IV
Sbjct: 174 PIALVICPSRELAKQTYDVVEQFVASLVEDGYPRLRSLLCIGGVDMRSQLDVVKKGVHIV 233
Query: 163 IATPGRLIDFLEKGTTNLQRCTYLVLDEADRMLDMGFEPQIRKIIDQIRPDRQTLMWSAT 342
+ATPGRL D L K +L C L LDEADR++D+GFE IR + D + RQTL++SAT
Sbjct: 234 VATPGRLKDILAKKKMSLDACRLLTLDEADRLVDLGFEDDIRHVFDHFKSQRQTLLFSAT 293
Query: 343 WPKEVRKLAEDYLGDYVQINIGSLQLSANHNILQIVDVCQEHEK 474
P +++ A L V +N+G +AN +++Q V+ ++ K
Sbjct: 294 MPAKIQIFATSALVKPVTVNVGRAG-AANLDVIQEVEYVKQEAK 336
>At5g26742.1 68418.m03161 DEAD box RNA helicase (RH3) nearly
identical to RNA helicase [Arabidopsis thaliana]
GI:3775987; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain, PF00098: Zinc knuckle
Length = 747
Score = 118 bits (285), Expect = 2e-27
Identities = 59/135 (43%), Positives = 88/135 (65%)
Frame = +1
Query: 1 PIALVLAPTRELAQQIQQVASEFGNSSYVRNTCVFGGAPKREQARDLERGVEIVIATPGR 180
P LVLAPTRELA+Q+++ E ++ Y+ CV+GG Q L RGV++V+ TPGR
Sbjct: 181 PKFLVLAPTRELAKQVEKEIKE--SAPYLSTVCVYGGVSYTIQQSALTRGVDVVVGTPGR 238
Query: 181 LIDFLEKGTTNLQRCTYLVLDEADRMLDMGFEPQIRKIIDQIRPDRQTLMWSATWPKEVR 360
+ID +E + L YLVLDEAD+ML +GFE + I++ + RQ++++SAT P V+
Sbjct: 239 IIDLIEGRSLKLGEVEYLVLDEADQMLAVGFEEAVESILENLPTKRQSMLFSATMPTWVK 298
Query: 361 KLAEDYLGDYVQINI 405
KLA YL + + I++
Sbjct: 299 KLARKYLDNPLNIDL 313
>At3g22310.1 68416.m02818 DEAD box RNA helicase, putative (RH9)
similar to RNA helicases GI:3775995, GI:3775987
[Arabidopsis thaliana]; contains Pfam profiles PF00270:
DEAD/DEAH box helicase, PF00271: Helicase conserved
C-terminal domain
Length = 610
Score = 118 bits (283), Expect = 4e-27
Identities = 56/136 (41%), Positives = 91/136 (66%), Gaps = 1/136 (0%)
Frame = +1
Query: 1 PIALVLAPTRELAQQIQQVASEFGNSSYVRNT-CVFGGAPKREQARDLERGVEIVIATPG 177
P LVLAPTRELA+Q+++ EF S+ +T C++GG P +Q R+L G+++ + TPG
Sbjct: 191 PQCLVLAPTRELARQVEK---EFRESAPSLDTICLYGGTPIGQQMRELNYGIDVAVGTPG 247
Query: 178 RLIDFLEKGTTNLQRCTYLVLDEADRMLDMGFEPQIRKIIDQIRPDRQTLMWSATWPKEV 357
R+ID +++G NL ++VLDEAD+ML +GF + I+ ++ RQ++M+SAT P +
Sbjct: 248 RIIDLMKRGALNLSEVQFVVLDEADQMLQVGFAEDVEIILQKLPAKRQSMMFSATMPSWI 307
Query: 358 RKLAEDYLGDYVQINI 405
R L + YL + + I++
Sbjct: 308 RSLTKKYLNNPLTIDL 323
>At2g45810.1 68415.m05697 DEAD/DEAH box helicase, putative
Length = 528
Score = 105 bits (253), Expect = 2e-23
Identities = 60/171 (35%), Positives = 92/171 (53%)
Frame = +1
Query: 7 ALVLAPTRELAQQIQQVASEFGNSSYVRNTCVFGGAPKREQARDLERGVEIVIATPGRLI 186
A++L PTRELA Q QV E + GG R+ L + V +++ TPGR++
Sbjct: 225 AVILVPTRELALQTSQVCKELSKYLKIEVMVTTGGTSLRDDIMRLYQPVHLLVGTPGRIL 284
Query: 187 DFLEKGTTNLQRCTYLVLDEADRMLDMGFEPQIRKIIDQIRPDRQTLMWSATWPKEVRKL 366
D +KG L+ C LV+DEAD++L + F+P I ++I + RQ LM+SAT+P V+
Sbjct: 285 DLAKKGVCVLKDCAMLVMDEADKLLSVEFQPSIEELIQFLPESRQILMFSATFPVTVKSF 344
Query: 367 AEDYLGDYVQINIGSLQLSANHNILQIVDVCQEHEKENKLNVLLQEIGQNQ 519
+ YL IN+ QL+ + Q +E +K + LN L ++ NQ
Sbjct: 345 KDRYLKKPYIINLMD-QLTL-MGVTQYYAFVEERQKVHCLNTLFSKLQINQ 393
>At4g00660.2 68417.m00091 DEAD/DEAH box helicase, putative similar
to ATP-dependent RNA helicases
Length = 505
Score = 105 bits (251), Expect = 3e-23
Identities = 57/171 (33%), Positives = 94/171 (54%)
Frame = +1
Query: 7 ALVLAPTRELAQQIQQVASEFGNSSYVRNTCVFGGAPKREQARDLERGVEIVIATPGRLI 186
A+++ PTRELA Q QV E G ++ GG ++ L + V +++ TPGR++
Sbjct: 202 AVIIVPTRELALQTSQVCKELGKHLKIQVMVTTGGTSLKDDIMRLYQPVHLLVGTPGRIL 261
Query: 187 DFLEKGTTNLQRCTYLVLDEADRMLDMGFEPQIRKIIDQIRPDRQTLMWSATWPKEVRKL 366
D +KG L+ C+ LV+DEAD++L F+P + +I + RQ LM+SAT+P V+
Sbjct: 262 DLTKKGVCVLKDCSVLVMDEADKLLSQEFQPSVEHLISFLPESRQILMFSATFPVTVKDF 321
Query: 367 AEDYLGDYVQINIGSLQLSANHNILQIVDVCQEHEKENKLNVLLQEIGQNQ 519
+ +L + IN+ +L+ I Q +E +K + LN L ++ NQ
Sbjct: 322 KDRFLTNPYVINLMD-ELTLK-GITQFYAFVEERQKIHCLNTLFSKLQINQ 370
>At4g00660.1 68417.m00090 DEAD/DEAH box helicase, putative similar
to ATP-dependent RNA helicases
Length = 505
Score = 105 bits (251), Expect = 3e-23
Identities = 57/171 (33%), Positives = 94/171 (54%)
Frame = +1
Query: 7 ALVLAPTRELAQQIQQVASEFGNSSYVRNTCVFGGAPKREQARDLERGVEIVIATPGRLI 186
A+++ PTRELA Q QV E G ++ GG ++ L + V +++ TPGR++
Sbjct: 202 AVIIVPTRELALQTSQVCKELGKHLKIQVMVTTGGTSLKDDIMRLYQPVHLLVGTPGRIL 261
Query: 187 DFLEKGTTNLQRCTYLVLDEADRMLDMGFEPQIRKIIDQIRPDRQTLMWSATWPKEVRKL 366
D +KG L+ C+ LV+DEAD++L F+P + +I + RQ LM+SAT+P V+
Sbjct: 262 DLTKKGVCVLKDCSVLVMDEADKLLSQEFQPSVEHLISFLPESRQILMFSATFPVTVKDF 321
Query: 367 AEDYLGDYVQINIGSLQLSANHNILQIVDVCQEHEKENKLNVLLQEIGQNQ 519
+ +L + IN+ +L+ I Q +E +K + LN L ++ NQ
Sbjct: 322 KDRFLTNPYVINLMD-ELTLK-GITQFYAFVEERQKIHCLNTLFSKLQINQ 370
>At3g61240.2 68416.m06854 DEAD/DEAH box helicase, putative (RH12)
identical to cDNA DEAD box RNA helicase, RH12 GI:3776000
Length = 498
Score = 103 bits (248), Expect = 7e-23
Identities = 58/171 (33%), Positives = 93/171 (54%)
Frame = +1
Query: 7 ALVLAPTRELAQQIQQVASEFGNSSYVRNTCVFGGAPKREQARDLERGVEIVIATPGRLI 186
A++L PTRELA Q QV E ++ GG R+ L + V +++ TPGR++
Sbjct: 195 AMILVPTRELALQTSQVCKELSKYLNIQVMVTTGGTSLRDDIMRLHQPVHLLVGTPGRIL 254
Query: 187 DFLEKGTTNLQRCTYLVLDEADRMLDMGFEPQIRKIIDQIRPDRQTLMWSATWPKEVRKL 366
D +KG L+ C LV+DEAD++L F+P + ++I + +RQ LM+SAT+P V+
Sbjct: 255 DLTKKGVCVLKDCAMLVMDEADKLLSAEFQPSLEELIQFLPQNRQFLMFSATFPVTVKAF 314
Query: 367 AEDYLGDYVQINIGSLQLSANHNILQIVDVCQEHEKENKLNVLLQEIGQNQ 519
+ +L IN+ QL+ + Q +E +K + LN L ++ NQ
Sbjct: 315 KDRHLRKPYVINLMD-QLTL-MGVTQYYAFVEERQKVHCLNTLFSKLQINQ 363
>At3g61240.1 68416.m06853 DEAD/DEAH box helicase, putative (RH12)
identical to cDNA DEAD box RNA helicase, RH12 GI:3776000
Length = 498
Score = 103 bits (248), Expect = 7e-23
Identities = 58/171 (33%), Positives = 93/171 (54%)
Frame = +1
Query: 7 ALVLAPTRELAQQIQQVASEFGNSSYVRNTCVFGGAPKREQARDLERGVEIVIATPGRLI 186
A++L PTRELA Q QV E ++ GG R+ L + V +++ TPGR++
Sbjct: 195 AMILVPTRELALQTSQVCKELSKYLNIQVMVTTGGTSLRDDIMRLHQPVHLLVGTPGRIL 254
Query: 187 DFLEKGTTNLQRCTYLVLDEADRMLDMGFEPQIRKIIDQIRPDRQTLMWSATWPKEVRKL 366
D +KG L+ C LV+DEAD++L F+P + ++I + +RQ LM+SAT+P V+
Sbjct: 255 DLTKKGVCVLKDCAMLVMDEADKLLSAEFQPSLEELIQFLPQNRQFLMFSATFPVTVKAF 314
Query: 367 AEDYLGDYVQINIGSLQLSANHNILQIVDVCQEHEKENKLNVLLQEIGQNQ 519
+ +L IN+ QL+ + Q +E +K + LN L ++ NQ
Sbjct: 315 KDRHLRKPYVINLMD-QLTL-MGVTQYYAFVEERQKVHCLNTLFSKLQINQ 363
>At3g02065.2 68416.m00170 DEAD/DEAH box helicase family protein
contains Pfam profile: PF00270 DEAD/DEAH box helicase
Length = 505
Score = 103 bits (246), Expect = 1e-22
Identities = 60/175 (34%), Positives = 90/175 (51%)
Frame = +1
Query: 1 PIALVLAPTRELAQQIQQVASEFGNSSYVRNTCVFGGAPKREQARDLERGVEIVIATPGR 180
P+A+VLAPTREL Q++ A G + V GG P Q +++GVE++I TPGR
Sbjct: 187 PLAMVLAPTRELCVQVEDQAKMLGKGLPFKTALVVGGDPMSGQLYRIQQGVELIIGTPGR 246
Query: 181 LIDFLEKGTTNLQRCTYLVLDEADRMLDMGFEPQIRKIIDQIRPDRQTLMWSATWPKEVR 360
++D L K T L VLDE D ML GF Q+ +I Q Q L++SAT +EV
Sbjct: 247 VVDLLSKHTIELDNIMTFVLDEVDCMLQRGFRDQVMQIF-QALSQPQVLLFSATISREVE 305
Query: 361 KLAEDYLGDYVQINIGSLQLSANHNILQIVDVCQEHEKENKLNVLLQEIGQNQDP 525
K+ + + ++IG+ N + Q+ +K+ KL +L+ + P
Sbjct: 306 KVGGSLAKEIILVSIGNPN-KPNKAVNQLAIWVDAKQKKQKLFDILRSQNHFKPP 359
>At3g02065.1 68416.m00171 DEAD/DEAH box helicase family protein
contains Pfam profile: PF00270 DEAD/DEAH box helicase
Length = 368
Score = 103 bits (246), Expect = 1e-22
Identities = 60/175 (34%), Positives = 90/175 (51%)
Frame = +1
Query: 1 PIALVLAPTRELAQQIQQVASEFGNSSYVRNTCVFGGAPKREQARDLERGVEIVIATPGR 180
P+A+VLAPTREL Q++ A G + V GG P Q +++GVE++I TPGR
Sbjct: 50 PLAMVLAPTRELCVQVEDQAKMLGKGLPFKTALVVGGDPMSGQLYRIQQGVELIIGTPGR 109
Query: 181 LIDFLEKGTTNLQRCTYLVLDEADRMLDMGFEPQIRKIIDQIRPDRQTLMWSATWPKEVR 360
++D L K T L VLDE D ML GF Q+ +I Q Q L++SAT +EV
Sbjct: 110 VVDLLSKHTIELDNIMTFVLDEVDCMLQRGFRDQVMQIF-QALSQPQVLLFSATISREVE 168
Query: 361 KLAEDYLGDYVQINIGSLQLSANHNILQIVDVCQEHEKENKLNVLLQEIGQNQDP 525
K+ + + ++IG+ N + Q+ +K+ KL +L+ + P
Sbjct: 169 KVGGSLAKEIILVSIGNPN-KPNKAVNQLAIWVDAKQKKQKLFDILRSQNHFKPP 222
>At3g13920.1 68416.m01758 eukaryotic translation initiation factor
4A-1 / eIF-4A-1 eIF-4A-1 gi:15293046, gi:15450485;
contains Pfam profile PF00270: DEAD/DEAH box helicase;
contains Pfam profile PF00271: Helicase conserved
C-terminal domain
Length = 412
Score = 100 bits (239), Expect = 8e-22
Identities = 54/131 (41%), Positives = 74/131 (56%)
Frame = +1
Query: 7 ALVLAPTRELAQQIQQVASEFGNSSYVRNTCVFGGAPKREQARDLERGVEIVIATPGRLI 186
ALVLAPTRELAQQI++V G+ V+ GG RE R L+ GV +V+ TPGR+
Sbjct: 110 ALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVF 169
Query: 187 DFLEKGTTNLQRCTYLVLDEADRMLDMGFEPQIRKIIDQIRPDRQTLMWSATWPKEVRKL 366
D L++ + VLDEAD ML GF+ QI I + P Q ++SAT P E ++
Sbjct: 170 DMLKRQSLRADNIKMFVLDEADEMLSRGFKDQIYDIFQLLPPKIQVGVFSATMPPEALEI 229
Query: 367 AEDYLGDYVQI 399
++ V+I
Sbjct: 230 TRKFMSKPVRI 240
>At5g62190.1 68418.m07807 DEAD box RNA helicase (PRH75) nearly
identical to RNA helicase [Arabidopsis thaliana]
GI:1488521; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain
Length = 671
Score = 99.1 bits (236), Expect = 2e-21
Identities = 56/159 (35%), Positives = 91/159 (57%), Gaps = 4/159 (2%)
Frame = +1
Query: 1 PIALVLAPTRELAQQIQQVASEFGNSSYVRNTCVFGGAPKREQARDLERGVEIVIATPGR 180
P LVL PTRELA+Q+ +G S + + C++GG Q L+RGV+IV+ TPGR
Sbjct: 175 PSVLVLLPTRELAKQVAADFDAYGGSLGLSSCCLYGGDSYPVQEGKLKRGVDIVVGTPGR 234
Query: 181 LIDFLEKGTTNLQRCTYLVLDEADRMLDMGFEPQIRKIIDQIRPDR--QTLMWSATWPKE 354
+ D +E+ + + VLDEAD ML MGF + I+ ++ QTL++SAT P
Sbjct: 235 IKDHIERQNLDFSYLQFRVLDEADEMLRMGFVEDVELILGKVEDSTKVQTLLFSATLPSW 294
Query: 355 VRKLAEDYL-GDYVQIN-IGSLQLSANHNILQIVDVCQE 465
V+ ++ +L D I+ +G+ ++ A++++ I C +
Sbjct: 295 VKNISNRFLKRDQKTIDLVGNDKMKASNSVRHIAIPCNK 333
>At1g54270.1 68414.m06187 eukaryotic translation initiation factor
4A-2 / eIF-4A-2 similar to eukaryotic translation
initiation factor 4A GI:19696 from [Nicotiana
plumbaginifolia]
Length = 412
Score = 98.7 bits (235), Expect = 3e-21
Identities = 54/131 (41%), Positives = 73/131 (55%)
Frame = +1
Query: 7 ALVLAPTRELAQQIQQVASEFGNSSYVRNTCVFGGAPKREQARDLERGVEIVIATPGRLI 186
ALVLAPTRELAQQI++V G+ V+ GG RE R L+ GV +V+ TPGR+
Sbjct: 110 ALVLAPTRELAQQIEKVMRALGDYQGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVF 169
Query: 187 DFLEKGTTNLQRCTYLVLDEADRMLDMGFEPQIRKIIDQIRPDRQTLMWSATWPKEVRKL 366
D L + + VLDEAD ML GF+ QI I + P Q ++SAT P E ++
Sbjct: 170 DMLRRQSLRPDCIKMFVLDEADEMLSRGFKDQIYDIFQLLPPKIQVGVFSATMPPEALEI 229
Query: 367 AEDYLGDYVQI 399
++ V+I
Sbjct: 230 TRKFMSKPVRI 240
>At1g72730.1 68414.m08410 eukaryotic translation initiation factor
4A, putative / eIF-4A, putative similar to Eukaryotic
initiation factor 4A-10 GB:P41382 [Nicotiana tabacum];
identical to (putative) RNA helicase GB:CAA09211
[Arabidopsis thaliana] (Nucleic Acids Res. 27 (2),
628-636 (1999))
Length = 414
Score = 97.5 bits (232), Expect = 6e-21
Identities = 61/171 (35%), Positives = 87/171 (50%)
Frame = +1
Query: 7 ALVLAPTRELAQQIQQVASEFGNSSYVRNTCVFGGAPKREQARDLERGVEIVIATPGRLI 186
ALVLAPTRELAQQI++V G+ V+ GG RE R L+ GV +V+ TPGR+
Sbjct: 112 ALVLAPTRELAQQIEKVMRALGDYLGVKAQACVGGTSVREDQRVLQSGVHVVVGTPGRVF 171
Query: 187 DFLEKGTTNLQRCTYLVLDEADRMLDMGFEPQIRKIIDQIRPDRQTLMWSATWPKEVRKL 366
D L + + VLDEAD ML GF+ QI I + Q ++SAT P E ++
Sbjct: 172 DLLRRQSLRADAIKMFVLDEADEMLSRGFKDQIYDIFQLLPSKVQVGVFSATMPPEALEI 231
Query: 367 AEDYLGDYVQINIGSLQLSANHNILQIVDVCQEHEKENKLNVLLQEIGQNQ 519
++ V+I + +L+ V+V +E K L L + + Q
Sbjct: 232 TRKFMNKPVRILVKRDELTLEGIKQFYVNVDKEEWKLETLCDLYETLAITQ 282
>At1g77050.1 68414.m08971 DEAD/DEAH box helicase, putative similar
to RNA helicase GI:3776027 from [Arabidopsis thaliana]
Length = 513
Score = 97.1 bits (231), Expect = 8e-21
Identities = 48/123 (39%), Positives = 77/123 (62%), Gaps = 1/123 (0%)
Frame = +1
Query: 7 ALVLAPTRELAQQIQQVASEFGNSSYVRNTCVFGGAPKREQARDLERGVEIVIATPGRLI 186
AL+L+PTR+LA+Q + E G + +R + + GG +Q +L +G +++IATPGRL+
Sbjct: 101 ALILSPTRDLAEQTLKFTKELGKFTDLRVSLLVGGDSMEDQFEELTKGPDVIIATPGRLM 160
Query: 187 DFL-EKGTTNLQRCTYLVLDEADRMLDMGFEPQIRKIIDQIRPDRQTLMWSATWPKEVRK 363
L E L+ Y+V DEAD + MGF Q+ +I+ Q+ +RQTL++SAT P + +
Sbjct: 161 HLLSEVDDMTLRTVEYVVFDEADSLFGMGFAEQLHQILTQLSENRQTLLFSATLPSALAE 220
Query: 364 LAE 372
A+
Sbjct: 221 FAK 223
>At1g51380.1 68414.m05780 eukaryotic translation initiation factor
4A, putative / eIF-4A, putative
Length = 392
Score = 95.1 bits (226), Expect = 3e-20
Identities = 57/170 (33%), Positives = 89/170 (52%)
Frame = +1
Query: 10 LVLAPTRELAQQIQQVASEFGNSSYVRNTCVFGGAPKREQARDLERGVEIVIATPGRLID 189
LVL+P+RELA Q ++ G + ++ GG E + LERGV V TPGR+ D
Sbjct: 94 LVLSPSRELASQTEKTIQAIGAHTNIQAHACIGGKSIGEDIKKLERGVHAVSGTPGRVYD 153
Query: 190 FLEKGTTNLQRCTYLVLDEADRMLDMGFEPQIRKIIDQIRPDRQTLMWSATWPKEVRKLA 369
+++G+ + LVLDE+D ML G + QI + + D Q + SAT P+E+ ++
Sbjct: 154 MIKRGSLQTKAVKLLVLDESDEMLSKGLKDQIYDVYRALPHDIQVCLISATLPQEILEMT 213
Query: 370 EDYLGDYVQINIGSLQLSANHNILQIVDVCQEHEKENKLNVLLQEIGQNQ 519
E ++ D V+I + +L+ VDV +E K + L L + NQ
Sbjct: 214 EKFMTDPVRILVKPDELTLEGIKQYYVDVDKEEWKFDTLCDLYGRLTINQ 263
>At4g09730.1 68417.m01598 DEAD/DEAH box helicase, putative RNA
helicase -Mus musculus,PIR2:I84741
Length = 621
Score = 94.7 bits (225), Expect = 4e-20
Identities = 64/206 (31%), Positives = 105/206 (50%), Gaps = 13/206 (6%)
Frame = +1
Query: 1 PIALVLAPTRELAQQIQQVASEFGNSSYVRNTCVFGGAPKREQARDLERGVEIVIATPGR 180
P +VL PTREL++Q+ +VA + + R+ V GG+ R Q L +++V+ TPGR
Sbjct: 190 PRTVVLCPTRELSEQVYRVAKSISHHARFRSILVSGGSRIRPQEDSLNNAIDMVVGTPGR 249
Query: 181 LIDFLEKGTTNLQRCTYLVLDEADRMLDMGFEPQIRKIIDQIRP------DR--QTLMWS 336
++ +E+G YLVLDEAD M D GF P+IRK + + D+ QT++ +
Sbjct: 250 ILQHIEEGNMVYGDIAYLVLDEADTMFDRGFGPEIRKFLAPLNQRALKTNDQGFQTVLVT 309
Query: 337 ATWPKEVRKLAEDYLGDYVQINIGSLQ---LSANHNILQIVDVCQEHEKENKLNVLLQEI 507
AT V+KL ++ + +L +A H+ +++ E+KL LLQ +
Sbjct: 310 ATMTMAVQKLVDEEFQGIEHLRTSTLHKKIANARHDFIKL------SGGEDKLEALLQVL 363
Query: 508 GQNQDPGAKDHYIC--*N*KKSGEHY 579
+ G+K C N ++ +HY
Sbjct: 364 EPSLAKGSKVMVFCNTLNSSRAVDHY 389
>At5g60990.1 68418.m07651 DEAD/DEAH box helicase, putative (RH10)
probable replication protein A1, Oryza sativa,
EMBL:AF009179
Length = 456
Score = 92.7 bits (220), Expect = 2e-19
Identities = 55/137 (40%), Positives = 82/137 (59%), Gaps = 2/137 (1%)
Frame = +1
Query: 7 ALVLAPTRELAQQIQQVASEFGNSSYVRNTCVFGGAPKREQARDLERGVEIVIATPGRLI 186
A VL+PTRELA QI + G +R + GG + +Q L + +++ATPGRL
Sbjct: 92 ACVLSPTRELAIQIAEQFEALGADISLRCAVLVGGIDRMQQTIALGKRPHVIVATPGRLW 151
Query: 187 DFLE--KGTTNLQRCTYLVLDEADRMLDMGFEPQIRKIIDQIRPDRQTLMWSATWPKEVR 360
D + KG + L+ YLVLDEADR+L+ FE + +I+++I +R+T ++SAT K+VR
Sbjct: 152 DHMSDTKGFS-LKSLKYLVLDEADRLLNEDFEKSLNQILEEIPLERKTFLFSATMTKKVR 210
Query: 361 KLAEDYLGDYVQINIGS 411
KL L + V+I S
Sbjct: 211 KLQRACLRNPVKIEAAS 227
>At3g19760.1 68416.m02501 eukaryotic translation initiation factor
4A, putative / eIF-4A, putative / DEAD box RNA helicase,
putative contains DEAD/DEAH helicase domain; similar to
RNA helicase GB:CAA09195 from [Arabidopsis thaliana];
identical to cDNA DEAD box RNA helicase, RH2 GI:3775984
Length = 408
Score = 92.3 bits (219), Expect = 2e-19
Identities = 46/131 (35%), Positives = 73/131 (55%)
Frame = +1
Query: 7 ALVLAPTRELAQQIQQVASEFGNSSYVRNTCVFGGAPKREQARDLERGVEIVIATPGRLI 186
AL+L+PTRELA Q ++ G + ++ GG E R LE GV +V TPGR+
Sbjct: 106 ALILSPTRELATQTEKTIQAIGLHANIQAHACIGGNSVGEDIRKLEHGVHVVSGTPGRVC 165
Query: 187 DFLEKGTTNLQRCTYLVLDEADRMLDMGFEPQIRKIIDQIRPDRQTLMWSATWPKEVRKL 366
D +++ + + L+LDE+D ML GF+ QI + + PD Q + SAT P E+ ++
Sbjct: 166 DMIKRRSLRTRAIKLLILDESDEMLSRGFKDQIYDVYRYLPPDLQVCLVSATLPHEILEM 225
Query: 367 AEDYLGDYVQI 399
++ + V+I
Sbjct: 226 TSKFMTEPVKI 236
>At1g63250.1 68414.m07150 DEAD box RNA helicase, putative similar to
RNA helicase (RH25) [Arabidopsis thaliana] GI:3776023;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain
Length = 798
Score = 89.4 bits (212), Expect = 2e-18
Identities = 66/188 (35%), Positives = 98/188 (52%), Gaps = 7/188 (3%)
Frame = +1
Query: 7 ALVLAPTRELAQQIQ---QVASEFGNSSYVRNTCVFGGAPKREQARDLERGVEIVIATPG 177
AL+L PTRELA QI + +F + V+ T + G K +Q R +I+IATPG
Sbjct: 408 ALILCPTRELASQIAAEGKALLKFHDGIGVQ-TLIGGTRFKLDQQRLESEPCQILIATPG 466
Query: 178 RLIDFLEKG---TTNLQRCTYLVLDEADRMLDMGFEPQIRKIIDQIRPDRQTLMWSATWP 348
RL+D +E T+ L ++DEAD +LD+GF + KIID + RQ+L++SAT P
Sbjct: 467 RLLDHIENKSGLTSRLMALKLFIVDEADLLLDLGFRRDVEKIIDCLPRQRQSLLFSATIP 526
Query: 349 KEVRKLAEDYL-GDYVQINIGSLQLSANHNILQIVDVCQEHEKENKLNVLLQEIGQNQDP 525
KEVR++++ L D+ I+ L H+ ++ + HE L L + N P
Sbjct: 527 KEVRRVSQLVLKRDHSYIDTIGLGCVETHDKVRQSCIVAPHESHFHLVPHLLKEHINNTP 586
Query: 526 GAKDHYIC 549
K C
Sbjct: 587 DYKIIVFC 594
>At5g65900.1 68418.m08295 DEAD/DEAH box helicase, putative contains
Pfam profiles PF00270:DEAD/DEAH box helicase and
PF00271: Helicase conserved C-terminal domain;
identical to cDNA RH27 helicase, partial GI:4033334
Length = 633
Score = 89.0 bits (211), Expect = 2e-18
Identities = 52/133 (39%), Positives = 77/133 (57%), Gaps = 1/133 (0%)
Frame = +1
Query: 10 LVLAPTRELAQQIQQVASEFGNSSYVRNTCVFGGAPKREQARDLERGVEIVIATPGRLID 189
LV+ PTRELA Q VA E V GG ++ +A L +GV +++ATPGRL+D
Sbjct: 230 LVICPTRELAIQSYGVAKELLKYHSQTVGKVIGGEKRKTEAEILAKGVNLLVATPGRLLD 289
Query: 190 FLEKGTTNL-QRCTYLVLDEADRMLDMGFEPQIRKIIDQIRPDRQTLMWSATWPKEVRKL 366
LE + + +LV+DEADR+L+ FE ++KI++ + RQT ++SAT +V L
Sbjct: 290 HLENTNGFIFKNLKFLVMDEADRILEQNFEEDLKKILNLLPKTRQTSLFSATQSAKVEDL 349
Query: 367 AEDYLGDYVQINI 405
A L V I++
Sbjct: 350 ARVSLTSPVYIDV 362
>At4g16630.1 68417.m02514 DEAD/DEAH box helicase, putative (RH28)
identical to cDNA DEAD box RNA helicase, RH28 GI:3776026
Length = 789
Score = 87.4 bits (207), Expect = 6e-18
Identities = 47/122 (38%), Positives = 71/122 (58%), Gaps = 1/122 (0%)
Frame = +1
Query: 10 LVLAPTRELAQQIQQVASEFGNSSYVRNTCVFGGAPKREQARDLERGVEIVIATPGRLID 189
L+L PTRELA QI + + ++ + GG REQ L +IV+ATPGR+ID
Sbjct: 242 LILTPTRELAVQIHSMIQNLAQFTDIKCGLIVGGLSVREQEVVLRSMPDIVVATPGRMID 301
Query: 190 FLEKG-TTNLQRCTYLVLDEADRMLDMGFEPQIRKIIDQIRPDRQTLMWSATWPKEVRKL 366
L + +L L+LDEADR+L GF +I +++ RQT+++SAT +EV++L
Sbjct: 302 HLRNSMSVDLDDLAVLILDEADRLLQTGFATEITELVRLCPKRRQTMLFSATMTEEVKEL 361
Query: 367 AE 372
+
Sbjct: 362 VK 363
>At3g18600.1 68416.m02364 DEAD/DEAH box helicase, putative
non-consensus acceptor splice site AT at exon 2; similar
to DEAD box helicase protein GB:NP_006764 from [Homo
sapiens], contains Pfam profile: PF00270 DEAD/DEAH box
helicase
Length = 568
Score = 87.0 bits (206), Expect = 8e-18
Identities = 50/133 (37%), Positives = 76/133 (57%), Gaps = 1/133 (0%)
Frame = +1
Query: 10 LVLAPTRELAQQIQQVASEFGNSSYVRNTCVFGGAPKREQARDLERGVEIVIATPGRLID 189
+V+ PTRELA Q + VA E + V GG +R +A+ + G +VIATPGRL+D
Sbjct: 165 IVICPTRELAIQTKNVAEELLKHHSQTVSMVIGGNNRRSEAQRIASGSNLVIATPGRLLD 224
Query: 190 FLEKGTTNL-QRCTYLVLDEADRMLDMGFEPQIRKIIDQIRPDRQTLMWSATWPKEVRKL 366
L+ + + LV+DEADR+L+ FE + KI+ + RQT ++SAT +V+ L
Sbjct: 225 HLQNTKAFIYKHLKCLVIDEADRILEENFEEDMNKILKILPKTRQTALFSATQTSKVKDL 284
Query: 367 AEDYLGDYVQINI 405
A L V +++
Sbjct: 285 ARVSLTSPVHVDV 297
>At2g07750.1 68415.m01003 DEAD box RNA helicase, putative similar to
RNA helicase RH25 [Arabidopsis thaliana] GI:3776023;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain
Length = 845
Score = 87.0 bits (206), Expect = 8e-18
Identities = 64/186 (34%), Positives = 94/186 (50%), Gaps = 6/186 (3%)
Frame = +1
Query: 10 LVLAPTRELAQQIQQVASEF-GNSSYVRNTCVFGGAPKREQARDLE-RGVEIVIATPGRL 183
L+L PTRELA QI N + + GG R + LE +I+IATPGRL
Sbjct: 456 LILCPTRELASQIAAEGKALLKNHDGIGVQTLIGGTRFRLDQQRLESEPCQILIATPGRL 515
Query: 184 IDFLEKG---TTNLQRCTYLVLDEADRMLDMGFEPQIRKIIDQIRPDRQTLMWSATWPKE 354
+D +E T+ L ++DEAD +LD+GF+ + KIID + RQ+L++SAT PKE
Sbjct: 516 LDHIENKSGLTSRLMALKLFIVDEADLLLDLGFKRDVEKIIDCLPRQRQSLLFSATIPKE 575
Query: 355 VRKLAEDYL-GDYVQINIGSLQLSANHNILQIVDVCQEHEKENKLNVLLQEIGQNQDPGA 531
VR++++ L D+ I+ L H+ ++ + HE L L + N P
Sbjct: 576 VRRVSQLVLKRDHSYIDTIGLGCVETHDKVKQSCIVAPHESHFHLVPHLLKEHINNMPDY 635
Query: 532 KDHYIC 549
K C
Sbjct: 636 KIIVFC 641
>At1g71370.1 68414.m08239 DEAD/DEAH box helicase, putative similar
to ATP-dependent RNA helicase GB:6321111 from (S.
cerevisiae)
Length = 558
Score = 86.2 bits (204), Expect = 1e-17
Identities = 56/171 (32%), Positives = 96/171 (56%), Gaps = 4/171 (2%)
Frame = +1
Query: 4 IALVLAPTRELAQQIQQVASEFGNS-SYVRNTCVFGGAPKREQARDLER-GVEIVIATPG 177
+ ++++PTREL+ QI +VA F ++ V + + GG LE G ++I TPG
Sbjct: 92 MGVIISPTRELSAQIHKVAEPFVSTLPNVNSVLLVGGREVEADMNTLEEEGANLLIGTPG 151
Query: 178 RLIDFLEKGT-TNLQRCTYLVLDEADRMLDMGFEPQIRKIIDQIRPDRQTLMWSATWPKE 354
RL D +++ + + L+LDEADR+LDMGF+ Q+ II ++ R+T ++SAT +
Sbjct: 152 RLSDMMKRMEFLDFRNLEILILDEADRLLDMGFQKQVNYIISRLPKQRRTGLFSATQTQA 211
Query: 355 VRKLAEDYLGDYVQINIGSLQLSANHNILQIVDV-CQEHEKENKLNVLLQE 504
V LA+ L + +++ G+ S + L + C+ +K ++L LL E
Sbjct: 212 VADLAKAGLRNAMEVISGAESKSKTSSGLYCEYLKCEADQKSSQLVHLLIE 262
>At5g08610.1 68418.m01024 DEAD box RNA helicase (RH26) strong
similarity to RNA helicase RH26 [Arabidopsis thaliana]
GI:3776025; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain;
identical to cDNA DEAD box RNA helicase, RH26 GI:3776024
Length = 850
Score = 85.0 bits (201), Expect = 3e-17
Identities = 67/181 (37%), Positives = 90/181 (49%), Gaps = 8/181 (4%)
Frame = +1
Query: 4 IALVLAPTRELAQQIQQVASEFGN-SSYVRNTCVFGGAP-KREQARDLERGVEIVIATPG 177
I LV+ PTRELA Q A+ + V GG EQ R +I++ATPG
Sbjct: 460 IVLVVCPTRELASQAAAEANTLLKYHPSIGVQVVIGGTKLPTEQRRMQTNPCQILVATPG 519
Query: 178 RLIDFLEKGT---TNLQRCTYLVLDEADRMLDMGFEPQIRKIIDQIRPDRQTLMWSATWP 348
RL D +E + T L LVLDEAD +LDMGF I +II + RQT ++SAT P
Sbjct: 520 RLKDHIENTSGFATRLMGVKVLVLDEADHLLDMGFRRDIERIIAAVPKQRQTFLFSATVP 579
Query: 349 KEVRKLAEDYL-GDYVQINIGSLQLSANH-NILQIVDVCQEHEKENKLNVLLQE-IGQNQ 519
+EVR++ L D+ IN H + Q+ + + L+VLL+E I N
Sbjct: 580 EEVRQICHVALKRDHEFINCVQEGSGETHQKVTQMYMIASLDRHFSLLHVLLKEHIADNV 639
Query: 520 D 522
D
Sbjct: 640 D 640
>At5g05450.1 68418.m00587 DEAD/DEAH box helicase, putative (RH18)
Length = 593
Score = 85.0 bits (201), Expect = 3e-17
Identities = 47/137 (34%), Positives = 84/137 (61%), Gaps = 3/137 (2%)
Frame = +1
Query: 4 IALVLAPTRELAQQIQQVASEFGNS-SYVRNTCVFGGAPKREQARDLER-GVEIVIATPG 177
+ ++++PTREL+ QI VA F ++ + V + + GG + + +E G ++I TPG
Sbjct: 92 MGVIISPTRELSTQIYNVAQPFVSTLANVNSVLLVGGREVKADMKIIEEEGCNVLIGTPG 151
Query: 178 RLIDFLEK-GTTNLQRCTYLVLDEADRMLDMGFEPQIRKIIDQIRPDRQTLMWSATWPKE 354
RL D +E+ + + L+LDEADR+L+MGF+ Q+ II ++ R+T ++SAT +
Sbjct: 152 RLSDIMERMEILDFRNLEILILDEADRLLEMGFQRQVNYIISRLPKQRRTGLFSATQTEG 211
Query: 355 VRKLAEDYLGDYVQINI 405
V +LA+ L + V++ +
Sbjct: 212 VEELAKAGLRNPVRVEV 228
>At5g63630.1 68418.m07989 DEAD box RNA helicase, putative strong
similarity to RNA helicase RH25 [Arabidopsis thaliana]
GI:3776023; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain; identical to cDNA DEAD box RNA helicase, RH31
GI:3776030
Length = 522
Score = 83.8 bits (198), Expect = 8e-17
Identities = 53/126 (42%), Positives = 71/126 (56%), Gaps = 5/126 (3%)
Frame = +1
Query: 4 IALVLAPTRELAQQIQQVASEFGN-SSYVRNTCVFGGAPKR-EQARDLERGVEIVIATPG 177
+ALV+ PTRELA Q A+ + V GG EQ R +I++ATPG
Sbjct: 132 LALVICPTRELANQAATEANTLLKYHPSIGVQVVIGGTRLGLEQKRMQTNPCQILVATPG 191
Query: 178 RLIDFLEKG---TTNLQRCTYLVLDEADRMLDMGFEPQIRKIIDQIRPDRQTLMWSATWP 348
RL D +E T L+ LVLDEAD +LDMGF I +II + +RQT ++SAT P
Sbjct: 192 RLKDHIENTPGFATRLKGVKVLVLDEADHLLDMGFRKDIERIISAVPKERQTFLFSATVP 251
Query: 349 KEVRKL 366
+EVR++
Sbjct: 252 EEVRQI 257
>At1g16280.1 68414.m01949 DEAD/DEAH box helicase, putative similar
to gb|L13612 DEAD-box protein (dbp45A) from Drosophila
melanogaster and is a member of PF|00270 DEAD/DEAH box
helicase family
Length = 491
Score = 83.0 bits (196), Expect = 1e-16
Identities = 49/125 (39%), Positives = 68/125 (54%), Gaps = 3/125 (2%)
Frame = +1
Query: 7 ALVLAPTRELAQQIQQVASEFGNSSYVRNTCVFGGAPKREQARDLERGVEIVIATPGRLI 186
ALV+ PTRELA Q+ + G+ +R + + GG Q L IVI TPGR+
Sbjct: 129 ALVVTPTRELAFQLAEQFKALGSCLNLRCSVIVGGMDMLTQTMSLVSRPHIVITTPGRIK 188
Query: 187 DFLEKGTTN---LQRCTYLVLDEADRMLDMGFEPQIRKIIDQIRPDRQTLMWSATWPKEV 357
LE R +LVLDEADR+LD+GF+ ++R I + RQTL++SAT +
Sbjct: 189 VLLENNPDVPPVFSRTKFLVLDEADRVLDVGFQDELRTIFQCLPKSRQTLLFSATMTSNL 248
Query: 358 RKLAE 372
+ L E
Sbjct: 249 QALLE 253
>At5g11200.1 68418.m01309 DEAD/DEAH box helicase, putative
Length = 427
Score = 82.6 bits (195), Expect = 2e-16
Identities = 57/176 (32%), Positives = 91/176 (51%), Gaps = 5/176 (2%)
Frame = +1
Query: 7 ALVLAPTRELAQQIQQVASEFGNSSYVRNT--CVFGGAPKREQARDLERGV--EIVIATP 174
ALVL TRELA QI F S+Y+ +T VF G + +DL + IV+ TP
Sbjct: 117 ALVLCHTRELAYQICNEFVRF--STYLPDTKVSVFYGGVNIKIHKDLLKNECPHIVVGTP 174
Query: 175 GRLIDFLEKGTTNLQRCTYLVLDEADRMLD-MGFEPQIRKIIDQIRPDRQTLMWSATWPK 351
GR++ + +L+ + +LDE D+ML+ + +++I D+Q +M+SAT K
Sbjct: 175 GRVLALAREKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFSATLSK 234
Query: 352 EVRKLAEDYLGDYVQINIGSLQLSANHNILQIVDVCQEHEKENKLNVLLQEIGQNQ 519
E+R + + ++ D ++I + H ++Q E EK KLN LL + NQ
Sbjct: 235 EIRPVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLSEMEKNRKLNDLLDALDFNQ 290
>At5g11170.2 68418.m01306 DEAD/DEAH box helicase, putative (RH15)
DEAD BOX RNA helicase RH15, Arabidopsis thaliana,
EMBL:ATH010466
Length = 344
Score = 82.2 bits (194), Expect = 2e-16
Identities = 57/176 (32%), Positives = 91/176 (51%), Gaps = 5/176 (2%)
Frame = +1
Query: 7 ALVLAPTRELAQQIQQVASEFGNSSYVRNT--CVFGGAPKREQARDLERGV--EIVIATP 174
ALVL TRELA QI F S+Y+ +T VF G + +DL + IV+ TP
Sbjct: 34 ALVLCHTRELAYQICNEFVRF--STYLPDTKVSVFYGGVNIKIHKDLLKNECPHIVVGTP 91
Query: 175 GRLIDFLEKGTTNLQRCTYLVLDEADRMLD-MGFEPQIRKIIDQIRPDRQTLMWSATWPK 351
GR++ + +L+ + +LDE D+ML+ + +++I D+Q +M+SAT K
Sbjct: 92 GRVLALAREKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFSATLSK 151
Query: 352 EVRKLAEDYLGDYVQINIGSLQLSANHNILQIVDVCQEHEKENKLNVLLQEIGQNQ 519
E+R + + ++ D ++I + H ++Q E EK KLN LL + NQ
Sbjct: 152 EIRPVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLSEMEKTRKLNDLLDALDFNQ 207
>At5g11170.1 68418.m01305 DEAD/DEAH box helicase, putative (RH15)
DEAD BOX RNA helicase RH15, Arabidopsis thaliana,
EMBL:ATH010466
Length = 427
Score = 82.2 bits (194), Expect = 2e-16
Identities = 57/176 (32%), Positives = 91/176 (51%), Gaps = 5/176 (2%)
Frame = +1
Query: 7 ALVLAPTRELAQQIQQVASEFGNSSYVRNT--CVFGGAPKREQARDLERGV--EIVIATP 174
ALVL TRELA QI F S+Y+ +T VF G + +DL + IV+ TP
Sbjct: 117 ALVLCHTRELAYQICNEFVRF--STYLPDTKVSVFYGGVNIKIHKDLLKNECPHIVVGTP 174
Query: 175 GRLIDFLEKGTTNLQRCTYLVLDEADRMLD-MGFEPQIRKIIDQIRPDRQTLMWSATWPK 351
GR++ + +L+ + +LDE D+ML+ + +++I D+Q +M+SAT K
Sbjct: 175 GRVLALAREKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFSATLSK 234
Query: 352 EVRKLAEDYLGDYVQINIGSLQLSANHNILQIVDVCQEHEKENKLNVLLQEIGQNQ 519
E+R + + ++ D ++I + H ++Q E EK KLN LL + NQ
Sbjct: 235 EIRPVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLSEMEKTRKLNDLLDALDFNQ 290
>At5g54910.1 68418.m06839 DEAD/DEAH box helicase, putative
Length = 739
Score = 79.0 bits (186), Expect = 2e-15
Identities = 51/162 (31%), Positives = 90/162 (55%), Gaps = 3/162 (1%)
Frame = +1
Query: 10 LVLAPTRELAQQIQQVASEFGNSSYVRNTCVFGGAPKREQARDLERGVEIVIATPGRLID 189
++++PTRELA Q V ++ G + GG + ++ + I++ PGRL+
Sbjct: 147 IIISPTRELAAQTFGVLNKVGKFHKFSAGLLIGGREGVDVEKERVHEMNILVCAPGRLLQ 206
Query: 190 FLEKGTTNLQ--RCTYLVLDEADRMLDMGFEPQIRKIIDQIRPDRQTLMWSATWPKEVRK 363
+++ T N + + L+LDEADR+LD F+ Q+ II Q+ RQTL++SAT K+V+
Sbjct: 207 HMDE-TPNFECPQLQILILDEADRVLDSAFKGQLDPIISQLPKHRQTLLFSATQTKKVKD 265
Query: 364 LAEDYLGDYVQINIGSLQLSAN-HNILQIVDVCQEHEKENKL 486
LA L D I++ + ++A +++Q V + +K + L
Sbjct: 266 LARLSLRDPEYISVHAEAVTATPTSLMQTVMIVPVEKKLDML 307
>At5g08620.1 68418.m01025 DEAD box RNA helicase (RH25) identical to
RNA helicase [Arabidopsis thaliana] GI:3776023; contains
Pfam profiles PF00270: DEAD/DEAH box helicase, PF00271:
Helicase conserved C-terminal domain
Length = 563
Score = 77.0 bits (181), Expect = 9e-15
Identities = 52/128 (40%), Positives = 74/128 (57%), Gaps = 7/128 (5%)
Frame = +1
Query: 4 IALVLAPTRELAQQIQQVAS---EFGNSSYVRNTCVFGGAPKREQARDLERG-VEIVIAT 171
I LV+ PTRELA Q A+ ++ S V+ V GG + R L++ +I++AT
Sbjct: 158 IVLVVCPTRELACQAAAEANILLKYHPSIGVQ--VVIGGTKLPTEQRRLQKSPCQILVAT 215
Query: 172 PGRLIDFLEKGT---TNLQRCTYLVLDEADRMLDMGFEPQIRKIIDQIRPDRQTLMWSAT 342
PGRL D ++ + T L LVLDEAD +LDMGF +I +II + RQT ++SAT
Sbjct: 216 PGRLKDHIDNTSGFATRLMGVKVLVLDEADHLLDMGFRREIERIIAAVPKQRQTFLFSAT 275
Query: 343 WPKEVRKL 366
EVR++
Sbjct: 276 VSDEVRQI 283
>At2g40700.1 68415.m05021 DEAD/DEAH box helicase, putative (RH17)
identical to GB:CAA09207, contains a DEAD/DEAH box
family ATP-dependent helicas signature; identical to
cDNA DEAD box RNA helicase, RH17 GI:3776008
Length = 609
Score = 72.5 bits (170), Expect = 2e-13
Identities = 52/162 (32%), Positives = 86/162 (53%), Gaps = 18/162 (11%)
Frame = +1
Query: 7 ALVLAPTRELAQQIQQVASEFGNS-SYVRNTCVFGGAPKREQARDLERGVEIVIATPGRL 183
ALV+ PTREL Q+ + + + ++ V GG K ++ L +G+ I+IATPGRL
Sbjct: 107 ALVIVPTRELCLQVYETLEKLLHRFHWIVPGYVMGGEKKAKEKARLRKGISILIATPGRL 166
Query: 184 IDFLEKGTTNLQR-CTYLVLDEADRMLDMGFEPQIRKII-------------DQIRP--- 312
+D L+ + + + +++ DEAD +L++G+ +I +II D I P
Sbjct: 167 LDHLKNTASFVHKNLRWVIFDEADSILELGYGKEIEQIIKLLGSGQNEQGEEDDIVPKGI 226
Query: 313 DRQTLMWSATWPKEVRKLAEDYLGDYVQINIGSLQLSANHNI 438
+Q L+ SAT +V LA+ L D V I + + +L N +I
Sbjct: 227 QKQNLLLSATLNDKVNDLAKLSLDDPVMIGLDNTKLQQNLSI 268
>At3g06980.1 68416.m00829 DEAD/DEAH box helicase, putative contains
Pfam profile: PF00270 DEAD/DEAH box helicase
Length = 781
Score = 70.5 bits (165), Expect = 8e-13
Identities = 45/127 (35%), Positives = 64/127 (50%), Gaps = 3/127 (2%)
Frame = +1
Query: 1 PIALVLAPTRELAQQIQQVASEFGNSSY-VRNTCVFGGAPKREQARDLERGVEIVIATPG 177
P +VL PT ELA Q+ S R+ V GG +R Q +LE+GV+++IATPG
Sbjct: 452 PRVIVLVPTAELASQVLANCRSISKSGVPFRSMVVTGGFRQRTQLENLEQGVDVLIATPG 511
Query: 178 RLIDFLEKGTTNLQRCTYLVLDEADRML-DMGFEPQIRKIIDQIRPDRQTLMWSATWPKE 354
R + +G L +LDE D + D FE ++ +I+ Q L +AT P E
Sbjct: 512 RFTYLMNEGILGLSNLRCAILDEVDILFGDDEFEAALQNLINSSPVTAQYLFVTATLPLE 571
Query: 355 V-RKLAE 372
+ KL E
Sbjct: 572 IYNKLVE 578
>At3g16840.1 68416.m02150 DEAD/DEAH box helicase, putative (RH13)
similar to RNA helicase GB:CAA09204 from [Arabidopsis
thaliana]; identical to cDNA DEAD box RNA helicase, RH13
GI:3776002
Length = 832
Score = 69.7 bits (163), Expect = 1e-12
Identities = 38/101 (37%), Positives = 58/101 (57%), Gaps = 3/101 (2%)
Frame = +1
Query: 7 ALVLAPTRELAQQIQQVASEFGNSSYVRNTCVFGGAPKREQARDLERGVEIVIATPGRLI 186
AL++ PTRELA Q+ + + V+ + GG +Q R L+ EIV+ATPGRL
Sbjct: 282 ALIITPTRELALQVTEHLENAAKNLSVKVVPIVGGMFSEKQERRLKEKPEIVVATPGRLW 341
Query: 187 DFL---EKGTTNLQRCTYLVLDEADRMLDMGFEPQIRKIID 300
+ + EK L ++ VLDEADRM++ G +++ I+D
Sbjct: 342 ELMSAGEKHLVELHSLSFFVLDEADRMVERGHFRELQSILD 382
>At1g71280.1 68414.m08226 DEAD/DEAH box helicase, putative contains
Pfam profile: PF00270 DEAD/DEAH box helicase
Length = 465
Score = 69.7 bits (163), Expect = 1e-12
Identities = 47/128 (36%), Positives = 73/128 (57%), Gaps = 5/128 (3%)
Frame = +1
Query: 4 IALVLAPTRELAQQIQQVASEFGNSSYVRNTCVFGGAPKREQARDL----ERGVEIVIAT 171
+ ++++PTREL+ QI +VA VR A RE D+ E G ++I T
Sbjct: 93 MGVIISPTRELSAQIHKVARA------VR----LDFAKCREVEADMNTLEEEGANLLIGT 142
Query: 172 PGRLIDFLEKGT-TNLQRCTYLVLDEADRMLDMGFEPQIRKIIDQIRPDRQTLMWSATWP 348
PGRL D +++ + + L+LDEADR+LDMGF+ Q+ II ++ R+T ++SAT
Sbjct: 143 PGRLSDMMKRMEFLDFRNLEILILDEADRLLDMGFQKQVNYIISRLPKQRRTGLFSATQT 202
Query: 349 KEVRKLAE 372
+ V LA+
Sbjct: 203 QAVADLAK 210
>At1g12770.1 68414.m01482 DEAD/DEAH box helicase family protein /
pentatricopeptide (PPR) repeat-containing protein
contains Pfam profiles: PF00271 helicase conserved
C-terminal domain, PF01535 PPR repeat, PF00270:
DEAD/DEAH box helicase
Length = 1145
Score = 62.9 bits (146), Expect = 2e-10
Identities = 43/140 (30%), Positives = 70/140 (50%), Gaps = 16/140 (11%)
Frame = +1
Query: 7 ALVLAPTRELAQQI-QQVASEFGNSSYVRNTCVFGGAPKREQARDLERGVE-IVIATPGR 180
A+++AP+REL QI ++V G + GGA + Q L++ IV+ TPGR
Sbjct: 194 AMIVAPSRELGMQIVREVEKLLGPVHRRMVQQLVGGANRMRQEEALKKNKPAIVVGTPGR 253
Query: 181 LIDFLEKGTTNLQRCTYLVLDEADRMLDMGFEPQIRKIIDQI--------------RPDR 318
+ + + G + C +LVLDE D +L F I +I++ + R +R
Sbjct: 254 IAEISKGGKLHTHGCRFLVLDEVDELLSFNFREDIHRILEHVGKRSGAGPKGEVDERANR 313
Query: 319 QTLMWSATWPKEVRKLAEDY 378
QT++ SAT P V + A+ +
Sbjct: 314 QTILVSATVPFSVIRAAKSW 333
>At3g53110.1 68416.m05853 DEAD/DEAH box helicase, putative RNA
helicase, Mus musculus, PIR:I49731
Length = 496
Score = 62.5 bits (145), Expect = 2e-10
Identities = 53/182 (29%), Positives = 86/182 (47%), Gaps = 6/182 (3%)
Frame = +1
Query: 1 PIALVLAPTRELAQQIQQVASEFGNSSYVRNTCVFGGAPKREQA--RDLERGVEIVIATP 174
P AL + PTRELA Q +V + G + + + + A R +VI TP
Sbjct: 163 PQALCICPTRELANQNMEVLQKMGKFTGITAELAVPDSTRGAPAATRGAPVSAHVVIGTP 222
Query: 175 GRLIDFLEKGTTNLQRCTYLVLDEADRMLDM-GFEP---QIRKIIDQIRPDRQTLMWSAT 342
G L ++ L LV DEAD ML GF +I K I ++ P+ Q L++SAT
Sbjct: 223 GTLKKWMAFKRLGLNHLKILVFDEADHMLATDGFRDDSLKIMKDIGRVNPNFQVLLFSAT 282
Query: 343 WPKEVRKLAEDYLGDYVQINIGSLQLSANHNILQIVDVCQEHEKENKLNVLLQEIGQNQD 522
+ + V+ + D Q+ + L+ + ++ Q VC +++NK+ V+ +I + D
Sbjct: 283 FNETVKDFVARTVKDPNQLFVKREDLALD-SVKQYKVVCP--KEQNKIEVIKDQIMELGD 339
Query: 523 PG 528
G
Sbjct: 340 IG 341
>At2g28600.1 68415.m03476 expressed protein
Length = 502
Score = 58.4 bits (135), Expect = 3e-09
Identities = 38/161 (23%), Positives = 71/161 (44%), Gaps = 2/161 (1%)
Frame = +1
Query: 1 PIALVLAPTRELAQQIQQVASEFGNSSYVRNTCVFGGAPKREQARDLER-GVEIVIATPG 177
P L L P++ A Q++ V + + GAP Q L+ E ++ATP
Sbjct: 197 PFLLYLVPSQSKASQVRSVCKALKGIG-IHTVSLHQGAPLDHQISGLKSVEPEFIVATPE 255
Query: 178 RLIDFLEKGTTNLQRCTYLVLDEADRMLDMGFEPQIRKIIDQIRPDRQTLMWSATWPKEV 357
RL++ + ++ + LV+DE + G+ ++ I I QT++++ ++ +
Sbjct: 256 RLLEIVTLKGVDISNVSLLVIDELGSLCSGGYLNAVKSIKQAISSKHQTIVFNNSFSASI 315
Query: 358 RKLAEDYLGDYV-QINIGSLQLSANHNILQIVDVCQEHEKE 477
+ +LG V ++ + S I Q V VC EK+
Sbjct: 316 IPAVQSFLGGSVNRVTVNESVASQGSCITQTVSVCASEEKK 356
>At3g09720.1 68416.m01151 DEAD/DEAH box helicase, putative similar
to RNA helicase involved in rRNA processing GB:6321267
from [Saccharomyces cerevisiae]c, ontains DEAD and DEAH
box domain
Length = 541
Score = 56.4 bits (130), Expect = 1e-08
Identities = 47/176 (26%), Positives = 87/176 (49%), Gaps = 3/176 (1%)
Frame = +1
Query: 7 ALVLAPTRELAQQIQQVASEF--GNSSYVRNTCVFGGAPKREQARDLERGVEIVIATPGR 180
A++L+P RELA Q + + G++ ++R P + A + +++I+TP R
Sbjct: 213 AVILSPARELAAQTAREGKKLIKGSNFHIRLMT----KPLVKTADFSKLWCDVLISTPMR 268
Query: 181 LIDFLEKGTTNLQRCTYLVLDEADRMLDMGFEPQIRKIIDQI-RPDRQTLMWSATWPKEV 357
L ++ +L + YLVLDE+D++ + QI ++ P ++SAT P V
Sbjct: 269 LKRAIKAKKIDLSKVEYLVLDESDKLFEQSLLKQIDCVVKACSNPSIIRSLFSATLPDSV 328
Query: 358 RKLAEDYLGDYVQINIGSLQLSANHNILQIVDVCQEHEKENKLNVLLQEIGQNQDP 525
+LA + D V++ IG + +A+ + Q + +E KL L Q ++ +P
Sbjct: 329 EELARSIMHDAVRVIIGR-KNTASETVKQ--KLVFAGSEEGKLLALRQSFAESLNP 381
>At4g34910.1 68417.m04950 DEAD/DEAH box helicase, putative (RH16)
identical to cDNA DEAD box RNA helicase, RH16 GI:3776006
Length = 626
Score = 51.6 bits (118), Expect = 4e-07
Identities = 40/128 (31%), Positives = 59/128 (46%), Gaps = 6/128 (4%)
Frame = +1
Query: 1 PIALVLAPTRELAQQIQQVASEFGNSSYVRNTCV-FGGAPKREQARDLERGV-EIVIATP 174
P A +L P+REL QQ+ S V+ V + R+ G+ EI+++TP
Sbjct: 121 PSAFILVPSRELCQQVYTEVSSLIELCRVQLKAVQLTSSMSASDMRNALAGLPEILVSTP 180
Query: 175 GRLIDFLEKG----TTNLQRCTYLVLDEADRMLDMGFEPQIRKIIDQIRPDRQTLMWSAT 342
+ G T + + LVLDEAD +L G+E +R + I Q L+ SAT
Sbjct: 181 ACIPKCFAAGVLEPTAVSESLSILVLDEADLLLSYGYEDNLRSVTSIIPRRCQCLLMSAT 240
Query: 343 WPKEVRKL 366
+V KL
Sbjct: 241 TSSDVEKL 248
>At4g15850.1 68417.m02410 DEAD/DEAH box helicase, putative similar
to D-E-A-D box protein [Drosophila melanogaster]
GI:499204; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 512
Score = 48.8 bits (111), Expect = 3e-06
Identities = 42/135 (31%), Positives = 65/135 (48%), Gaps = 23/135 (17%)
Frame = +1
Query: 7 ALVLAPTRELAQQIQQV------------ASEFGNSSYVRNTCVFGGAPKREQ------- 129
ALV+ PTR+LA Q++ V S G SS PK +
Sbjct: 97 ALVVLPTRDLALQVKDVFDAIAPAVGLSVGSAVGQSSIAGEISQLIKTPKLDAGICYDPD 156
Query: 130 --ARDLERGVEIVIATPGRLIDFLE--KGTTNLQRCTYLVLDEADRMLDMGFEPQIRKII 297
+++LE V+I++ATPGRL+D + KG T L+ YLV+DE DR+L ++ + ++
Sbjct: 157 DLSQNLESAVDILVATPGRLMDHINNTKGFT-LEHLRYLVVDETDRLLREAYQSWLPTVL 215
Query: 298 DQIRPDRQTLMWSAT 342
+ +L S T
Sbjct: 216 QLTQTSDDSLFPSFT 230
>At1g59990.1 68414.m06758 DEAD/DEAH box helicase, putative (RH22)
similar to RNA helicase GI:3776015 from [Arabidopsis
thaliana]; contains Pfam profiles PF00271: Helicase
conserved C-terminal domain, PF00270: DEAD/DEAH box
helicase; matches EST OAO811-2
Length = 581
Score = 42.3 bits (95), Expect = 2e-04
Identities = 51/181 (28%), Positives = 84/181 (46%), Gaps = 11/181 (6%)
Frame = +1
Query: 4 IALVLAPTRELAQQIQQVAS----EFGNSSY-VRNTCVFGGAPKREQARDLERGVEIVIA 168
I+L+L P L +Q+ ++ + E GN V C G P +R +I+++
Sbjct: 164 ISLILCPNVMLCEQVVRMVNGLVDEDGNPLLRVEAVCGSQGWP--------DRLPDIIVS 215
Query: 169 TPGRLIDFLE-KGTTNLQ--RCT-YLVLDEADRMLDMGFEPQIRKIIDQIRPDRQTLMWS 336
TP L++ +E K L+ RC Y+V DEAD +L F+ QI ++I+ +R D
Sbjct: 216 TPAALLNNIEPKRNRRLEFLRCVKYVVFDEADMLLCGSFQNQIIRLINMLRFDE------ 269
Query: 337 ATWPKEVRKLAEDYLGDYVQINIGSLQLSANHNILQIVD--VCQEHEKENKLNVLLQEIG 510
K+V +LA+ LG ++I+ Q+ + D E E E + L +I
Sbjct: 270 ----KQVSRLAKSNLGRPMEIDASVPQIDLENEDDAEFDEGSISEEEDEEEEEEYLDDIA 325
Query: 511 Q 513
Q
Sbjct: 326 Q 326
>At5g19210.2 68418.m02287 DEAD/DEAH box helicase, putative
EUKARYOTIC INITIATION FACTOR 4A-II (EIF-4A-II), Homo
sapiens, SWISSPROT:IF42_HUMAN
Length = 472
Score = 39.5 bits (88), Expect = 0.002
Identities = 46/178 (25%), Positives = 78/178 (43%), Gaps = 14/178 (7%)
Frame = +1
Query: 7 ALVLAPTRELAQQIQQVASEFGNSSY--VRNTCVF----GGAPKREQARDLERGVEIVIA 168
A+++ PTREL Q+ +VA S V+ V GG +R ++ I++A
Sbjct: 147 AVIVVPTRELGMQVTKVARMLAAKSEIDVKGCTVMALLDGGTLRRHKSWLKAEPPAILVA 206
Query: 169 TPGRLIDFLEKGTTNLQRCTYLVLDEADRMLDMGFE-PQIRKIIDQIR--PDRQTLMWSA 339
T L LEK + LV+DE D + + +RK++ RQT+ SA
Sbjct: 207 TVASLCHMLEKHIFRIDSVRVLVVDEVDFLFYSSKQVGSVRKLLTSFSSCDKRQTVFASA 266
Query: 340 TWPKEVRKLAEDYLGDYVQINIGSLQLSANHNILQIVDVCQEH-----EKENKLNVLL 498
+ P+ + + + + ++ + +SA + + +C H EK NK VLL
Sbjct: 267 SIPQHKHFVHDCIQQKWTKRDVVHVHVSA----IMPMPLCLLHRFVMCEKTNKHQVLL 320
>At1g62440.1 68414.m07044 leucine-rich repeat family protein /
extensin family protein similar to extensin-like protein
[Lycopersicon esculentum] gi|5917664|gb|AAD55979;
contains leucine-rich repeats, Pfam:PF00560; contains
proline rich extensin domains, INTERPRO:IPR002965
Length = 826
Score = 31.5 bits (68), Expect = 0.44
Identities = 13/31 (41%), Positives = 21/31 (67%)
Frame = -2
Query: 577 NVLRFSFSFNKYNGPLHQGLGFAQSLEEVHL 485
NV F SFN+ +GPL +G +SLE++++
Sbjct: 309 NVTVFDISFNRLSGPLPSSIGNMKSLEQLNV 339
>At4g12200.1 68417.m01937 zinc knuckle (CCHC-type) family protein
contains Pfam profile PF00098: Zinc knuckle
Length = 200
Score = 29.9 bits (64), Expect = 1.4
Identities = 17/61 (27%), Positives = 31/61 (50%)
Frame = +1
Query: 301 QIRPDRQTLMWSATWPKEVRKLAEDYLGDYVQINIGSLQLSANHNILQIVDVCQEHEKEN 480
+I + Q + + P+++ K D GDY+ +G ++ A IL ++D + E EN
Sbjct: 27 EIFDEDQAIYLMISLPEQIEKF--DGRGDYI---LGKTKILARFEILDVIDALKIEEDEN 81
Query: 481 K 483
K
Sbjct: 82 K 82
>At1g15820.1 68414.m01898 chlorophyll A-B binding protein,
chloroplast (LHCB6) nearly identical to Lhcb6 protein
[Arabidopsis thaliana] GI:4741960; contains Pfam profile
PF00504: Chlorophyll A-B binding protein
Length = 258
Score = 29.5 bits (63), Expect = 1.8
Identities = 14/45 (31%), Positives = 25/45 (55%)
Frame = +1
Query: 253 RMLDMGFEPQIRKIIDQIRPDRQTLMWSATWPKEVRKLAEDYLGD 387
++L MG+ + ++ +D PD Q++ W+ W K A +Y GD
Sbjct: 149 QLLLMGWV-ESKRWVDFFNPDSQSVEWATPWSKTAENFA-NYTGD 191
>At5g19210.1 68418.m02288 DEAD/DEAH box helicase, putative
EUKARYOTIC INITIATION FACTOR 4A-II (EIF-4A-II), Homo
sapiens, SWISSPROT:IF42_HUMAN
Length = 315
Score = 29.1 bits (62), Expect = 2.4
Identities = 34/139 (24%), Positives = 60/139 (43%), Gaps = 8/139 (5%)
Frame = +1
Query: 106 GGAPKREQARDLERGVEIVIATPGRLIDFLEKGTTNLQRCTYLVLDEADRMLDMGFE-PQ 282
GG +R ++ I++AT L LEK + LV+DE D + +
Sbjct: 29 GGTLRRHKSWLKAEPPAILVATVASLCHMLEKHIFRIDSVRVLVVDEVDFLFYSSKQVGS 88
Query: 283 IRKIIDQIR--PDRQTLMWSATWPKEVRKLAEDYLGDYVQINIGSLQLSANHNILQIVDV 456
+RK++ RQT+ SA+ P+ + + + + ++ + +SA + + +
Sbjct: 89 VRKLLTSFSSCDKRQTVFASASIPQHKHFVHDCIQQKWTKRDVVHVHVSA----IMPMPL 144
Query: 457 CQEH-----EKENKLNVLL 498
C H EK NK VLL
Sbjct: 145 CLLHRFVMCEKTNKHQVLL 163
>At5g14860.1 68418.m01743 UDP-glucoronosyl/UDP-glucosyl transferase
family protein contains Pfam profile: PF00201
UDP-glucoronosyl and UDP-glucosyl transferase
Length = 486
Score = 28.7 bits (61), Expect = 3.1
Identities = 11/28 (39%), Positives = 16/28 (57%)
Frame = +3
Query: 501 RDWAKPRPWCKGPLYLLKLKEKRRTLPE 584
RD +P+PWC GPL L+ + P+
Sbjct: 247 RDNDEPKPWCVGPLCLVNPPKPESDKPD 274
>At3g60970.1 68416.m06823 ABC transporter family protein ABC
transporter-like proteins
Length = 1037
Score = 28.7 bits (61), Expect = 3.1
Identities = 16/39 (41%), Positives = 22/39 (56%)
Frame = +1
Query: 202 GTTNLQRCTYLVLDEADRMLDMGFEPQIRKIIDQIRPDR 318
G L++ LVLDEA +D + I+KII+Q DR
Sbjct: 934 GRVLLKKSNILVLDEATASVDSATDGVIQKIINQEFKDR 972
>At3g60160.1 68416.m06717 ABC transporter family protein similar to
ATP-binding cassette transporter MRP8 GI:18031899 from
[Arabidopsis thaliana]
Length = 1490
Score = 28.7 bits (61), Expect = 3.1
Identities = 16/39 (41%), Positives = 22/39 (56%)
Frame = +1
Query: 202 GTTNLQRCTYLVLDEADRMLDMGFEPQIRKIIDQIRPDR 318
G L++ LVLDEA +D + I+KII+Q DR
Sbjct: 1387 GRVLLKKSNILVLDEATASVDSATDGVIQKIINQEFKDR 1425
>At3g23010.1 68416.m02901 disease resistance family protein / LRR
family protein contains leucine rich-repeat domains
Pfam:PF00560, INTERPRO:IPR001611; contains similarity to
Cf-2.2 [Lycopersicon pimpinellifolium]
gi|1184077|gb|AAC15780
Length = 595
Score = 28.3 bits (60), Expect = 4.1
Identities = 17/41 (41%), Positives = 23/41 (56%), Gaps = 2/41 (4%)
Frame = -2
Query: 601 SISSDISG--NVLRFSFSFNKYNGPLHQGLGFAQSLEEVHL 485
SIS+D+SG N+ RFS N ++GP L SL + L
Sbjct: 58 SISADLSGLHNLERFSVYNNSFSGPFPLSLLMIPSLVHIDL 98
>At2g45000.1 68415.m05603 expressed protein contains Pfam profile:
PF05064 Nsp1-like C-terminal region
Length = 739
Score = 27.9 bits (59), Expect = 5.5
Identities = 13/32 (40%), Positives = 16/32 (50%)
Frame = -2
Query: 595 SSDISGNVLRFSFSFNKYNGPLHQGLGFAQSL 500
SS S SFSFN+ + P G GF S+
Sbjct: 25 SSSASSTTSPLSFSFNQSSNPSSTGFGFGSSV 56
>At1g12040.1 68414.m01390 leucine-rich repeat family protein /
extensin family protein (LRX1) similar to extensin-like
protein [Lycopersicon esculentum]
gi|5917664|gb|AAD55979; contains leucine-rich repeats,
Pfam:PF00560; contains proline rich extensin domains,
INTERPRO:IPR002965
Length = 744
Score = 27.9 bits (59), Expect = 5.5
Identities = 11/27 (40%), Positives = 17/27 (62%)
Frame = -2
Query: 565 FSFSFNKYNGPLHQGLGFAQSLEEVHL 485
F + N+ GPL +G +SLEE+H+
Sbjct: 271 FDITSNRLQGPLPSSVGNMKSLEELHV 297
>At5g27300.1 68418.m03260 pentatricopeptide (PPR) repeat-containing
protein low similarity to fertility restorer [Petunia x
hybrida] GI:22128587; contains Pfam profile PF01535: PPR
repeat
Length = 510
Score = 27.5 bits (58), Expect = 7.2
Identities = 14/37 (37%), Positives = 21/37 (56%)
Frame = +1
Query: 175 GRLIDFLEKGTTNLQRCTYLVLDEADRMLDMGFEPQI 285
GR++DF+ T + C DEA R+L+M E Q+
Sbjct: 308 GRVVDFISYRTLVDESCRKGKYDEATRLLEMLREKQL 344
>At5g19310.1 68418.m02301 homeotic gene regulator, putative similar
to SP|P25439 Homeotic gene regulator (Brahma protein)
{Drosophila melanogaster}; contains Pfam profiles
PF00271: Helicase conserved C-terminal domain, PF00176:
SNF2 family N-terminal domain
Length = 1064
Score = 27.5 bits (58), Expect = 7.2
Identities = 11/33 (33%), Positives = 18/33 (54%)
Frame = -2
Query: 550 NKYNGPLHQGLGFAQSLEEVHLICFLFHVLDKH 452
N YNG L +G ++++ + LI +L D H
Sbjct: 403 NDYNGILADEMGLGKTIQTIALIAYLLESKDLH 435
>At2g27800.1 68415.m03370 pentatricopeptide (PPR) repeat-containing
protein contains Pfam profile PF01535: PPR repeat
Length = 427
Score = 27.5 bits (58), Expect = 7.2
Identities = 14/37 (37%), Positives = 21/37 (56%)
Frame = +1
Query: 175 GRLIDFLEKGTTNLQRCTYLVLDEADRMLDMGFEPQI 285
GR++DF+ T + C DEA R+L+M E Q+
Sbjct: 374 GRVVDFISYRTLVDESCRKGKYDEATRLLEMLREKQL 410
>At4g13340.1 68417.m02084 leucine-rich repeat family protein /
extensin family protein similar to extensin-like protein
[Lycopersicon esculentum] gi|5917664|gb|AAD55979;
contains leucine-rich repeats, Pfam:PF00560; contains
proline rich extensin domains, INTERPRO:IPR002965
Length = 760
Score = 27.1 bits (57), Expect = 9.6
Identities = 12/31 (38%), Positives = 20/31 (64%)
Frame = -2
Query: 577 NVLRFSFSFNKYNGPLHQGLGFAQSLEEVHL 485
NV F SFN+ GPL + +G S+E++++
Sbjct: 281 NVTVFDVSFNELVGPLPESVGEMVSVEQLNV 311
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,543,021
Number of Sequences: 28952
Number of extensions: 288150
Number of successful extensions: 957
Number of sequences better than 10.0: 79
Number of HSP's better than 10.0 without gapping: 854
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 903
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1197101088
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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