Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0006_D10
(441 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC23D3.13c |||guanyl-nucleotide exchange factor|Schizosaccharo... 28 0.73
SPAC16A10.06c |nse2||Smc5-6 complex non-SMC subunit 2 |Schizosac... 26 3.0
SPAC1399.05c |||transcription factor, zf-fungal binuclear cluste... 26 3.0
SPBC15C4.06c ||SPBC21H7.01c|ubiquitin-protein ligase E3 |Schizos... 26 3.0
SPAC17H9.01 |cid16||poly|Schizosaccharomyces pombe|chr 1|||Manual 25 3.9
SPCC188.08c |ubp22|ubp5|ubiquitin C-terminal hydrolase Ubp22|Sch... 25 3.9
SPAC11D3.05 |||membrane transporter|Schizosaccharomyces pombe|ch... 25 5.2
SPAC1F7.01c |spt6|SPAC694.07c|transcription elongation factor Sp... 25 6.8
SPCC1827.01c |||DUF1253 family protein|Schizosaccharomyces pombe... 24 9.0
SPBP19A11.04c |mor2|cps12|morphogenesis protein Mor2|Schizosacch... 24 9.0
SPAC1687.22c |puf3|SPAC222.02c|RNA-binding protein Puf3 |Schizos... 24 9.0
>SPAC23D3.13c |||guanyl-nucleotide exchange factor|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1616
Score = 27.9 bits (59), Expect = 0.73
Identities = 11/38 (28%), Positives = 24/38 (63%)
Frame = +3
Query: 144 LAIAVKDAIFVQECVPENLELKKKVFQNLDNVVDDNTI 257
L A + ++ +P + L KK+F+N +NVV+++++
Sbjct: 1284 LTYAFNEEKTIRASLPTLICLSKKIFENAENVVENHSL 1321
>SPAC16A10.06c |nse2||Smc5-6 complex non-SMC subunit 2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 250
Score = 25.8 bits (54), Expect = 3.0
Identities = 12/41 (29%), Positives = 22/41 (53%)
Frame = -3
Query: 163 SLTAIAKSQVPFTHWNCSSAFRFPLRSPSFSKVFNCTLISA 41
SL A++++ +P +CS F+ S +V C L++A
Sbjct: 9 SLEALSQNLLPGNQNHCSFDFQLKEIDDSIKQVIKCALVAA 49
>SPAC1399.05c |||transcription factor, zf-fungal binuclear cluster
type|Schizosaccharomyces pombe|chr 1|||Manual
Length = 529
Score = 25.8 bits (54), Expect = 3.0
Identities = 13/36 (36%), Positives = 19/36 (52%), Gaps = 1/36 (2%)
Frame = -2
Query: 434 FHDSSGFLSHFWFXPRR-WNYLYKWHVVWWINWMRH 330
F SS L++ P R WN+L H+V + + RH
Sbjct: 252 FAGSSATLTYLDIVPARTWNHLCHGHLVMCMGYRRH 287
>SPBC15C4.06c ||SPBC21H7.01c|ubiquitin-protein ligase E3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 556
Score = 25.8 bits (54), Expect = 3.0
Identities = 13/28 (46%), Positives = 17/28 (60%), Gaps = 1/28 (3%)
Frame = +1
Query: 181 NASRKIWNSKRKYSKIWTMS-SMTTLSY 261
NA RK+WN +R+Y S S T +SY
Sbjct: 36 NAIRKLWNERRRYRMPKDESISPTPISY 63
>SPAC17H9.01 |cid16||poly|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1202
Score = 25.4 bits (53), Expect = 3.9
Identities = 10/26 (38%), Positives = 16/26 (61%)
Frame = +1
Query: 154 PLRMRFSYKNASRKIWNSKRKYSKIW 231
PL++ F YKN +R+ W S + +W
Sbjct: 394 PLQVAFVYKNLARR-WISLEEIENLW 418
>SPCC188.08c |ubp22|ubp5|ubiquitin C-terminal hydrolase
Ubp22|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1108
Score = 25.4 bits (53), Expect = 3.9
Identities = 12/32 (37%), Positives = 16/32 (50%)
Frame = +3
Query: 345 NPPYYVPLVEIVPAPWTKPEVTKKTRAIMEEI 440
N YY L PW K + T+ TRA + E+
Sbjct: 462 NGHYYALLKTEKDGPWYKYDDTRVTRATLREV 493
>SPAC11D3.05 |||membrane transporter|Schizosaccharomyces pombe|chr
1|||Manual
Length = 546
Score = 25.0 bits (52), Expect = 5.2
Identities = 7/13 (53%), Positives = 10/13 (76%)
Frame = -2
Query: 392 PRRWNYLYKWHVV 354
PR W++ YKW +V
Sbjct: 97 PRNWSHSYKWWIV 109
>SPAC1F7.01c |spt6|SPAC694.07c|transcription elongation factor
Spt6|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1365
Score = 24.6 bits (51), Expect = 6.8
Identities = 9/15 (60%), Positives = 10/15 (66%)
Frame = -3
Query: 223 WNTFFLSSKFSGTHS 179
WN FFL +KF HS
Sbjct: 364 WNIFFLCTKFWSLHS 378
>SPCC1827.01c |||DUF1253 family protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 652
Score = 24.2 bits (50), Expect = 9.0
Identities = 10/21 (47%), Positives = 13/21 (61%)
Frame = +3
Query: 315 KAQVIVSHPVNPPYYVPLVEI 377
KA V+ P NP +YV LV +
Sbjct: 580 KAVVMYGPPTNPQFYVELVRM 600
>SPBP19A11.04c |mor2|cps12|morphogenesis protein
Mor2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 2196
Score = 24.2 bits (50), Expect = 9.0
Identities = 8/16 (50%), Positives = 11/16 (68%)
Frame = -3
Query: 256 IVLSSTTLSKFWNTFF 209
+VL T +K+WN FF
Sbjct: 310 VVLKMCTKTKYWNVFF 325
>SPAC1687.22c |puf3|SPAC222.02c|RNA-binding protein Puf3
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 732
Score = 24.2 bits (50), Expect = 9.0
Identities = 13/33 (39%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
Frame = -3
Query: 253 VLSSTT-LSKFWNTFFLSSKFSGTHSCTKIASL 158
+LS T+ S F+N+ +SS ++ H K ASL
Sbjct: 43 LLSGTSPTSSFFNSSMISSNYTFPHGSNKQASL 75
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,766,434
Number of Sequences: 5004
Number of extensions: 34037
Number of successful extensions: 117
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 112
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 117
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 160149590
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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