Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0006_D10
         (441 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_53765| Best HMM Match : 3HCDH_N (HMM E-Value=9.2e-12)               93   9e-20
SB_21667| Best HMM Match : No HMM Matches (HMM E-Value=.)              48   5e-06
SB_26886| Best HMM Match : No HMM Matches (HMM E-Value=.)              33   0.10 
SB_44095| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   3.0  
SB_17988| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   3.9  
SB_46409| Best HMM Match : EGF_2 (HMM E-Value=0.011)                   27   5.2  
SB_6983| Best HMM Match : rve (HMM E-Value=0.011)                      27   5.2  
SB_26220| Best HMM Match : EGF_2 (HMM E-Value=0.011)                   27   5.2  
SB_52868| Best HMM Match : Homeobox (HMM E-Value=1.6e-23)              27   9.1  
SB_41180| Best HMM Match : DUF229 (HMM E-Value=0)                      27   9.1  
SB_35887| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.1  
SB_29339| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.1  

>SB_53765| Best HMM Match : 3HCDH_N (HMM E-Value=9.2e-12)
          Length = 120

 Score = 93.1 bits (221), Expect = 9e-20
 Identities = 41/88 (46%), Positives = 58/88 (65%), Gaps = 1/88 (1%)
 Frame = +3

Query: 180 ECVPENLELKKKVFQNLDNVVDDN-TIXXXXXXXXXXXXXXENMKHKAQVIVSHPVNPPY 356
           EC PENLELKKKVFQNL+  +  +  I              E+++ + + IV+HP+NPPY
Sbjct: 1   ECTPENLELKKKVFQNLEATLSSSEVILASSTSCIMPSKFTESLQLRQRCIVAHPINPPY 60

Query: 357 YVPLVEIVPAPWTKPEVTKKTRAIMEEI 440
           YVPLVE++PAPWT   V ++T  +M++I
Sbjct: 61  YVPLVEVIPAPWTDASVIEQTIKLMKDI 88


>SB_21667| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 812

 Score = 47.6 bits (108), Expect = 5e-06
 Identities = 31/122 (25%), Positives = 53/122 (43%), Gaps = 1/122 (0%)
 Frame = +3

Query: 72  EKDGLLRGNLNADEQFQCVKGTCD-LAIAVKDAIFVQECVPENLELKKKVFQNLDNVVDD 248
           +K+ L R  + A   F      C+ L  AV ++  + E   ENLE+KK VF+++      
Sbjct: 51  QKEQLKREEVMATSDFIGTVAFCESLEEAVVNSGLIFEATIENLEVKKSVFKSISQFCRT 110

Query: 249 NTIXXXXXXXXXXXXXXENMKHKAQVIVSHPVNPPYYVPLVEIVPAPWTKPEVTKKTRAI 428
           N +              E++ +  + +    + P Y +P VEI     T PE  +K +  
Sbjct: 111 NAVIATNTLALDTSVVAEHVTNPERCLGIRFLYPVYSIPEVEITLGSQTSPETIQKVQQF 170

Query: 429 ME 434
           +E
Sbjct: 171 LE 172


>SB_26886| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 6489

 Score = 33.1 bits (72), Expect = 0.10
 Identities = 15/41 (36%), Positives = 25/41 (60%), Gaps = 2/41 (4%)
 Frame = +3

Query: 84  LLRGNLNADEQFQ--CVKGTCDLAIAVKDAIFVQECVPENL 200
           LLR   + DE  +  C++  CD+A+ V D  F+ +CV ++L
Sbjct: 806 LLRDTNDTDECMKECCLRDECDVAVMVSDYCFMADCVSDSL 846


>SB_44095| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 3051

 Score = 28.3 bits (60), Expect = 3.0
 Identities = 20/78 (25%), Positives = 34/78 (43%), Gaps = 15/78 (19%)
 Frame = +3

Query: 12   VVEKQITDAIADIK-VQLKTLEKDGLLRGNLNADE--------------QFQCVKGTCDL 146
            V  +++ +A+   K  Q   +E D  L+G +NA +              Q  C K TCD+
Sbjct: 1991 VTHRKVFEAVISHKRCQSSVIENDVTLQGGINAGKFTDLGQMTDMQECVQRCCAKSTCDV 2050

Query: 147  AIAVKDAIFVQECVPENL 200
            A  ++D  +   C+   L
Sbjct: 2051 AFMLEDECYGVSCISNTL 2068


>SB_17988| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 53

 Score = 27.9 bits (59), Expect = 3.9
 Identities = 15/36 (41%), Positives = 21/36 (58%)
 Frame = +3

Query: 126 VKGTCDLAIAVKDAIFVQECVPENLELKKKVFQNLD 233
           +K + D+  +V DA  V E + ENL  K K+F  LD
Sbjct: 13  LKISLDVPGSVADADLVIEAIVENLRTKHKLFTALD 48


>SB_46409| Best HMM Match : EGF_2 (HMM E-Value=0.011)
          Length = 323

 Score = 27.5 bits (58), Expect = 5.2
 Identities = 10/26 (38%), Positives = 15/26 (57%)
 Frame = +3

Query: 123 CVKGTCDLAIAVKDAIFVQECVPENL 200
           C + TCD+A  +KD  +  EC  + L
Sbjct: 176 CDRDTCDVAFYLKDTCYSVECYADEL 201


>SB_6983| Best HMM Match : rve (HMM E-Value=0.011)
          Length = 251

 Score = 27.5 bits (58), Expect = 5.2
 Identities = 14/45 (31%), Positives = 23/45 (51%), Gaps = 1/45 (2%)
 Frame = +3

Query: 306 MKHKAQVIVSHPVNPPYYVPLVE-IVPAPWTKPEVTKKTRAIMEE 437
           M +    +V  P  P    P+   +VP+P T+PEV   T + +E+
Sbjct: 194 MPNSPPQVVDIPETPAVVPPIPTLVVPSPLTQPEVESPTPSCIEQ 238


>SB_26220| Best HMM Match : EGF_2 (HMM E-Value=0.011)
          Length = 353

 Score = 27.5 bits (58), Expect = 5.2
 Identities = 10/26 (38%), Positives = 15/26 (57%)
 Frame = +3

Query: 123 CVKGTCDLAIAVKDAIFVQECVPENL 200
           C + TCD+A  +KD  +  EC  + L
Sbjct: 187 CDRDTCDVAFYLKDTCYSVECYADEL 212


>SB_52868| Best HMM Match : Homeobox (HMM E-Value=1.6e-23)
          Length = 434

 Score = 26.6 bits (56), Expect = 9.1
 Identities = 8/17 (47%), Positives = 11/17 (64%)
 Frame = -1

Query: 150 SLNHRYLSHIGTVHPHL 100
           S  H Y++H  T HPH+
Sbjct: 20  STTHPYITHASTTHPHI 36


>SB_41180| Best HMM Match : DUF229 (HMM E-Value=0)
          Length = 721

 Score = 26.6 bits (56), Expect = 9.1
 Identities = 13/29 (44%), Positives = 19/29 (65%)
 Frame = +3

Query: 39  IADIKVQLKTLEKDGLLRGNLNADEQFQC 125
           + D K   +T+E++G   GNL A +QFQC
Sbjct: 184 LVDDKGPGQTIEEEG--PGNLEAQDQFQC 210


>SB_35887| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 983

 Score = 26.6 bits (56), Expect = 9.1
 Identities = 10/26 (38%), Positives = 15/26 (57%)
 Frame = +3

Query: 123 CVKGTCDLAIAVKDAIFVQECVPENL 200
           CV   CDLA+ +K+  F+  C   +L
Sbjct: 732 CVSEKCDLALLIKNNCFLVSCFTADL 757


>SB_29339| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1048

 Score = 26.6 bits (56), Expect = 9.1
 Identities = 22/66 (33%), Positives = 31/66 (46%), Gaps = 5/66 (7%)
 Frame = +3

Query: 30  TDAIADIKVQLKTLEKDGLLRGNLNADEQFQ----CVKGTCDLAIAVKDAIFVQE-CVPE 194
           T   A+IKV+L  LE  GLL   +   ++F     CV    DL    +D +F +E C   
Sbjct: 681 TSTSANIKVELYVLEAYGLLLFRVEKSKEFHNPRVCVFKLSDLE-EDEDVVFTREDCKKH 739

Query: 195 NLELKK 212
            L+  K
Sbjct: 740 KLDRTK 745


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,908,325
Number of Sequences: 59808
Number of extensions: 256290
Number of successful extensions: 731
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 662
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 730
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 859323430
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)