Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0006_D10
         (441 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g15290.1 68416.m01931 3-hydroxybutyryl-CoA dehydrogenase, put...    52   1e-07
At3g06860.1 68416.m00814 fatty acid multifunctional protein (MFP...    50   5e-07
At4g29010.1 68417.m04147 abnormal inflorescence meristem 1 / fat...    50   7e-07
At1g52630.2 68414.m05942 expressed protein contains Pfam PF03138...    28   3.2  
At1g52630.1 68414.m05943 expressed protein contains Pfam PF03138...    28   3.2  
At5g41430.1 68418.m05032 zinc finger (C3HC4-type RING finger) fa...    27   4.2  
At5g26250.1 68418.m03131 sugar transporter, putative similar to ...    27   5.6  
At3g52480.1 68416.m05771 expressed protein                             27   5.6  
At3g46340.1 68416.m05018 leucine-rich repeat protein kinase, put...    27   7.4  
At2g27280.1 68415.m03278 hypothetical protein                          27   7.4  
At1g56510.1 68414.m06498 disease resistance protein (TIR-NBS-LRR...    27   7.4  
At5g52850.1 68418.m06560 pentatricopeptide (PPR) repeat-containi...    26   9.8  
At5g14920.1 68418.m01750 gibberellin-regulated family protein si...    26   9.8  
At4g23490.1 68417.m03384 fringe-related protein  + weak similari...    26   9.8  
At4g11350.1 68417.m01831 fringe-related protein various hypothet...    26   9.8  

>At3g15290.1 68416.m01931 3-hydroxybutyryl-CoA dehydrogenase,
           putative similar to S(+)-beta-hydroxybutyryl CoA
           dehydrogenase (3-hydroxybutyryl-CoA dehydrogenase)
           [Paracoccus denitrificans] GI:12003356; contains Pfam
           profiles PF02737: 3-hydroxyacyl-CoA dehydrogenase NAD
           binding, PF00725: 3-hydroxyacyl-CoA dehydrogenase
           C-terminal
          Length = 294

 Score = 52.4 bits (120), Expect = 1e-07
 Identities = 37/144 (25%), Positives = 62/144 (43%)
 Frame = +3

Query: 3   LFDVVEKQITDAIADIKVQLKTLEKDGLLRGNLNADEQFQCVKGTCDLAIAVKDAIFVQE 182
           L D     ++ A A I   +K     GL+   +  D+    ++ T +L       I V E
Sbjct: 32  LMDADRDALSRATAAISSSVKRFVSKGLISKEVG-DDAMHRLRLTSNLEDLCSADIIV-E 89

Query: 183 CVPENLELKKKVFQNLDNVVDDNTIXXXXXXXXXXXXXXENMKHKAQVIVSHPVNPPYYV 362
            + E+ ++KKK+F++LD +   + I                 +  +QVI  H +NPP  +
Sbjct: 90  AIVESEDIKKKLFKDLDGIAKSSAILASNTSSISITRLASATRRPSQVIGMHFMNPPPIM 149

Query: 363 PLVEIVPAPWTKPEVTKKTRAIME 434
            LVEI+    T  E    T+ + E
Sbjct: 150 KLVEIIRGADTSEETFLATKVLAE 173


>At3g06860.1 68416.m00814 fatty acid multifunctional protein (MFP2)
           identical to fatty acid multifunctional protein (AtMFP2)
           GB:AF123254 [gi:4337027] (Arabidopsis thaliana) (fatty
           acid beta-oxidation); contains Pfam profiles PF02737
           (3-hydroxyacyl-CoA dehydrogenase, NAD binding domain),
           PF00378 (enoyl-CoA hydratase/isomerase family protein),
           PF00725 (3-hydroxyacyl-CoA dehydrogenase)
          Length = 725

 Score = 50.4 bits (115), Expect = 5e-07
 Identities = 33/135 (24%), Positives = 63/135 (46%)
 Frame = +3

Query: 3   LFDVVEKQITDAIADIKVQLKTLEKDGLLRGNLNADEQFQCVKGTCDLAIAVKDAIFVQE 182
           L +V EK +   I  +K  L++  + G +      ++    +KG+ D   + +D   V E
Sbjct: 340 LKEVNEKFLEAGIGRVKANLQSRVRKGSMSQE-KFEKTMSLLKGSLDYE-SFRDVDMVIE 397

Query: 183 CVPENLELKKKVFQNLDNVVDDNTIXXXXXXXXXXXXXXENMKHKAQVIVSHPVNPPYYV 362
            V EN+ LK+++F +L+     + I              E  K + +++ +H  +P + +
Sbjct: 398 AVIENISLKQQIFADLEKYCPQHCILASNTSTIDLNKIGERTKSQDRIVGAHFFSPAHIM 457

Query: 363 PLVEIVPAPWTKPEV 407
           PL+EIV    T  +V
Sbjct: 458 PLLEIVRTNHTSAQV 472


>At4g29010.1 68417.m04147 abnormal inflorescence meristem 1 / fatty
           acid multifunctional protein (AIM1) identical to
           gi:4337025; contains Pfam profiles PF02737
           (3-hydroxyacyl-CoA dehydrogenase, NAD binding domain),
           PF00378 (enoyl-CoA hydratase/isomerase family protein),
           PF00725 (3-hydroxyacyl-CoA dehydrogenase)
          Length = 721

 Score = 50.0 bits (114), Expect = 7e-07
 Identities = 34/146 (23%), Positives = 64/146 (43%)
 Frame = +3

Query: 3   LFDVVEKQITDAIADIKVQLKTLEKDGLLRGNLNADEQFQCVKGTCDLAIAVKDAIFVQE 182
           L ++  + +   I  ++  +K+L   G L  +  A +     KG  D      D   V E
Sbjct: 337 LKEINSEFLMKGIKSVEANMKSLVSRGKLTQD-KAGKALSLFKGVLDYT-EFNDVDMVIE 394

Query: 183 CVPENLELKKKVFQNLDNVVDDNTIXXXXXXXXXXXXXXENMKHKAQVIVSHPVNPPYYV 362
            V EN++LK+ +F+ ++ V   + I              E    K +++ +H  +P + +
Sbjct: 395 AVIENIQLKQNIFKEIEKVCSPHCILASNTSTIDLDVIGEKTNSKDRIVGAHFFSPAHLM 454

Query: 363 PLVEIVPAPWTKPEVTKKTRAIMEEI 440
           PL+EIV +  T  +V     A+ + I
Sbjct: 455 PLLEIVRSKNTSAQVILDLMAVGKAI 480


>At1g52630.2 68414.m05942 expressed protein contains Pfam PF03138:
           Plant protein family. The function of this family of
           plant proteins is unknown;
          Length = 351

 Score = 27.9 bits (59), Expect = 3.2
 Identities = 18/43 (41%), Positives = 22/43 (51%), Gaps = 2/43 (4%)
 Frame = -3

Query: 319 ALCFIFSENSDGNVVLV--ELDKIVLSSTTLSKFWNTFFLSSK 197
           AL +  S NSD  V      +DKIV +  T  +  NT FLS K
Sbjct: 265 ALDYHVSINSDAYVATYFGNMDKIVAAMRTYKQMHNTLFLSRK 307


>At1g52630.1 68414.m05943 expressed protein contains Pfam PF03138:
           Plant protein family. The function of this family of
           plant proteins is unknown;
          Length = 439

 Score = 27.9 bits (59), Expect = 3.2
 Identities = 18/43 (41%), Positives = 22/43 (51%), Gaps = 2/43 (4%)
 Frame = -3

Query: 319 ALCFIFSENSDGNVVLV--ELDKIVLSSTTLSKFWNTFFLSSK 197
           AL +  S NSD  V      +DKIV +  T  +  NT FLS K
Sbjct: 353 ALDYHVSINSDAYVATYFGNMDKIVAAMRTYKQMHNTLFLSRK 395


>At5g41430.1 68418.m05032 zinc finger (C3HC4-type RING finger)
           family protein contains Pfam profile: PF00097 zinc
           finger, C3HC4 type (RING finger)
          Length = 161

 Score = 27.5 bits (58), Expect = 4.2
 Identities = 13/33 (39%), Positives = 18/33 (54%)
 Frame = +3

Query: 333 SHPVNPPYYVPLVEIVPAPWTKPEVTKKTRAIM 431
           SHP  PP  VPL   +P P  +P+   +T  +M
Sbjct: 51  SHPSLPPLPVPLPLPLPQPQPQPQQDNETGHLM 83


>At5g26250.1 68418.m03131 sugar transporter, putative similar to
           hexose transporter [Lycopersicon esculentum] GI:5734440,
           sugar carrier protein {Ricinus communis} SP|Q41144,
           monosaccharide transporter [Nicotiana tabacum] GI:19885;
           contains Pfam profile PF00083: major facilitator
           superfamily protein
          Length = 507

 Score = 27.1 bits (57), Expect = 5.6
 Identities = 13/34 (38%), Positives = 22/34 (64%)
 Frame = +3

Query: 63  KTLEKDGLLRGNLNADEQFQCVKGTCDLAIAVKD 164
           +TL+K   +RG  + DE+++ +   CD+A  VKD
Sbjct: 237 ETLKK---IRGVEDVDEEYESIVHACDIARQVKD 267


>At3g52480.1 68416.m05771 expressed protein
          Length = 209

 Score = 27.1 bits (57), Expect = 5.6
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = -3

Query: 157 TAIAKSQVPFTHWNCSSAFRFPLRSPSF 74
           T I+  +V F+H+N ++ F  P  SP F
Sbjct: 159 TDISDDEVDFSHYNQTTPFSTPCASPPF 186


>At3g46340.1 68416.m05018 leucine-rich repeat protein kinase,
           putative similar to light repressible receptor protein
           kinase [Arabidopsis thaliana] gi|1321686|emb|CAA66376;
           contains leucine rich repeat (LRR) domains,
           Pfam:PF00560; contains protein kinase domain,
           Pfam:PF00069
          Length = 889

 Score = 26.6 bits (56), Expect = 7.4
 Identities = 12/23 (52%), Positives = 15/23 (65%)
 Frame = +3

Query: 72  EKDGLLRGNLNADEQFQCVKGTC 140
           EKDGL    L+ DEQ +C  G+C
Sbjct: 485 EKDGL---KLSVDEQIRCFPGSC 504


>At2g27280.1 68415.m03278 hypothetical protein 
          Length = 427

 Score = 26.6 bits (56), Expect = 7.4
 Identities = 11/23 (47%), Positives = 15/23 (65%)
 Frame = +3

Query: 9   DVVEKQITDAIADIKVQLKTLEK 77
           D  EK+ITDA+   K +L+  EK
Sbjct: 41  DTAEKEITDAVTTAKERLRETEK 63


>At1g56510.1 68414.m06498 disease resistance protein (TIR-NBS-LRR
           class), putative domain signature TIR-NBS-LRR exists,
           suggestive of a disease resistance protein.
          Length = 1007

 Score = 26.6 bits (56), Expect = 7.4
 Identities = 15/61 (24%), Positives = 26/61 (42%), Gaps = 2/61 (3%)
 Frame = -3

Query: 268 ELDKIVLSSTTLSKFWNTFFLSSKFSGTHSCTKIASLTAIAK--SQVPFTHWNCSSAFRF 95
           E+D++++S     K  N  FL    +G H+  +   +    K    +   HW+  S  R 
Sbjct: 535 EIDELMISPKAFEKMCNLLFLKVYDAGWHTGKRKLDIPEDIKFPRTIRLFHWDAYSGKRL 594

Query: 94  P 92
           P
Sbjct: 595 P 595


>At5g52850.1 68418.m06560 pentatricopeptide (PPR) repeat-containing
           protein contains INTERPRO:IPR002885 PPR repeats
          Length = 893

 Score = 26.2 bits (55), Expect = 9.8
 Identities = 15/46 (32%), Positives = 25/46 (54%)
 Frame = +3

Query: 300 ENMKHKAQVIVSHPVNPPYYVPLVEIVPAPWTKPEVTKKTRAIMEE 437
           E+M +K   +   P +P  Y+ L ++      KPE+ +KTR +M E
Sbjct: 717 EDMANKGLALA--PSDPALYILLADLYDESG-KPELAQKTRNLMTE 759


>At5g14920.1 68418.m01750 gibberellin-regulated family protein
           similar to SP|P46689 Gibberellin-regulated protein 1
           precursor {Arabidopsis thaliana}; contains Pfam profile
           PF02704: Gibberellin regulated protein
          Length = 275

 Score = 26.2 bits (55), Expect = 9.8
 Identities = 13/31 (41%), Positives = 14/31 (45%)
 Frame = +3

Query: 327 IVSHPVNPPYYVPLVEIVPAPWTKPEVTKKT 419
           + S PV PP Y P    V  P T P V   T
Sbjct: 147 VQSPPVQPPTYKPPTSPVKPPTTTPPVKPPT 177


>At4g23490.1 68417.m03384 fringe-related protein  + weak similarity
           to Fringe [Schistocerca gregaria](GI:6573138);Fringe
           encodes an extracellular protein that regulates Notch
           signalling.
          Length = 526

 Score = 26.2 bits (55), Expect = 9.8
 Identities = 8/16 (50%), Positives = 12/16 (75%)
 Frame = +1

Query: 184 ASRKIWNSKRKYSKIW 231
           AS K+W  +++Y KIW
Sbjct: 120 ASSKLWKQRKEYIKIW 135


>At4g11350.1 68417.m01831 fringe-related protein various
           hypothetical proteins from Arabidopsis thaliana strong
           similarity to unknown protein (pir||T13026) similarity
           to predicted proteins + similar to hypothetical protein
           GB:AAC23643 [Arabidopsis thaliana] + weak similarity to
           Fringe [Schistocerca gregaria](GI:6573138);Fringe
           encodes an extracellular protein that regulates Notch
           signalling.
          Length = 489

 Score = 26.2 bits (55), Expect = 9.8
 Identities = 8/16 (50%), Positives = 12/16 (75%)
 Frame = +1

Query: 184 ASRKIWNSKRKYSKIW 231
           AS K+W  +++Y KIW
Sbjct: 98  ASSKLWKQRKEYIKIW 113


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,046,975
Number of Sequences: 28952
Number of extensions: 172754
Number of successful extensions: 597
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 564
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 597
length of database: 12,070,560
effective HSP length: 75
effective length of database: 9,899,160
effective search space used: 702840360
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)