Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0006_D09
         (527 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_05_0275 - 23762905-23762995,23763775-23763841,23763925-237639...    65   4e-11
03_05_0976 - 29341981-29342229,29342388-29342621,29342771-293430...    29   3.1  

>05_05_0275 -
           23762905-23762995,23763775-23763841,23763925-23763976,
           23764966-23765124
          Length = 122

 Score = 64.9 bits (151), Expect = 4e-11
 Identities = 30/89 (33%), Positives = 53/89 (59%)
 Frame = +3

Query: 162 MQMYKPILVRTPITIIFGGYLGSLMFMFLVTAVGNLEATLFGKNFQLKLPEIILSMGVSL 341
           ++MY+     + +  I GG++ SL+F+FL+T +GN +        +     ++++   +L
Sbjct: 23  LEMYRGRFASSELMTIAGGFVSSLLFLFLLTFIGNYQEA---NGVKTGWGAVVVAELTAL 79

Query: 342 IAAGMVHRICFTTCLIFSIITIYHMNKLS 428
           I AG VHR+C TTC +FS   +Y ++KLS
Sbjct: 80  IVAGTVHRVCITTCFLFSAGFLYEVDKLS 108


>03_05_0976 -
           29341981-29342229,29342388-29342621,29342771-29343046,
           29343181-29343457,29343549-29343847,29344021-29344152,
           29344451-29344660,29344812-29344875,29346114-29346260,
           29346477-29346760
          Length = 723

 Score = 28.7 bits (61), Expect = 3.1
 Identities = 13/34 (38%), Positives = 20/34 (58%)
 Frame = -1

Query: 449 YGCVGFL**LVHVINSYY*KY*TGGKANSVDHTS 348
           Y C+G+L     ++N YY KY  GGK   + H++
Sbjct: 552 YFCLGYLVYRNQILNVYYPKYEMGGKLWPIMHST 585


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,764,265
Number of Sequences: 37544
Number of extensions: 199100
Number of successful extensions: 400
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 395
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 399
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1166441080
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)