Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0006_D09
         (527 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_49146| Best HMM Match : GntR (HMM E-Value=1.8e-16)                  30   1.4  
SB_39697| Best HMM Match : ER_lumen_recept (HMM E-Value=1.4)           28   4.1  
SB_6544| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   5.5  

>SB_49146| Best HMM Match : GntR (HMM E-Value=1.8e-16)
          Length = 410

 Score = 29.9 bits (64), Expect = 1.4
 Identities = 13/31 (41%), Positives = 19/31 (61%)
 Frame = -2

Query: 202 VIGVLTKIGLYICIPENIRRVSIDDKIKDVA 110
           +I V +K G Y+C+P+  R VS    + DVA
Sbjct: 62  LIEVRSKAGFYVCVPKLNRVVSASSTVADVA 92


>SB_39697| Best HMM Match : ER_lumen_recept (HMM E-Value=1.4)
          Length = 151

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 17/76 (22%), Positives = 34/76 (44%)
 Frame = +3

Query: 195 PITIIFGGYLGSLMFMFLVTAVGNLEATLFGKNFQLKLPEIILSMGVSLIAAGMVHRICF 374
           P+  +FG  L   +  F +  +  L+  +FG N    L   ++S   S+IA  +++  C+
Sbjct: 74  PVIFLFG--LLPQVNTFAMYILEQLDMHVFGGNAMTNLKGAVVSFLRSIIATALLYGFCY 131

Query: 375 TTCLIFSIITIYHMNK 422
               +     +Y + K
Sbjct: 132 LALTVLVQHVVYSVKK 147


>SB_6544| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 400

 Score = 27.9 bits (59), Expect = 5.5
 Identities = 18/61 (29%), Positives = 32/61 (52%), Gaps = 2/61 (3%)
 Frame = +3

Query: 231 LMFMFLVTAVGNLEATLFGKNFQLKLPE--IILSMGVSLIAAGMVHRICFTTCLIFSIIT 404
           ++   L+ +V +L   L  K  QL++    ++ S+ VS +  G+V    FT+C I   +T
Sbjct: 102 IVLAILIISVNSLVLILVIKVKQLRVTTNYLLCSLAVSDLLTGLVSIPLFTSCNILQTLT 161

Query: 405 I 407
           I
Sbjct: 162 I 162


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,284,084
Number of Sequences: 59808
Number of extensions: 248305
Number of successful extensions: 552
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 528
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 552
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1197191618
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)