Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0006_D09
         (527 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF100306-9|ABB88216.1|  105|Caenorhabditis elegans Hypothetical ...    29   2.1  
Z68317-2|CAA92690.2|  980|Caenorhabditis elegans Hypothetical pr...    28   3.6  
U13876-14|AAA21168.1| 2500|Caenorhabditis elegans Not-like (yeas...    27   6.3  
U12965-5|AAA20612.2|  346|Caenorhabditis elegans Serpentine rece...    27   6.3  
AC024849-4|AAL27260.2|  152|Caenorhabditis elegans Hypothetical ...    27   8.3  

>AF100306-9|ABB88216.1|  105|Caenorhabditis elegans Hypothetical
           protein T24C4.9 protein.
          Length = 105

 Score = 29.1 bits (62), Expect = 2.1
 Identities = 16/61 (26%), Positives = 28/61 (45%)
 Frame = +3

Query: 183 LVRTPITIIFGGYLGSLMFMFLVTAVGNLEATLFGKNFQLKLPEIILSMGVSLIAAGMVH 362
           +V   + ++  GYL SL  M   T    L   +FG N  + + ++I  + V  I +  + 
Sbjct: 25  MVLRSVIVLSAGYLASLALMGYFTIKMTLMCVVFGTNTLVIITDVISMIAVFTIRSDQLR 84

Query: 363 R 365
           R
Sbjct: 85  R 85


>Z68317-2|CAA92690.2|  980|Caenorhabditis elegans Hypothetical
           protein T01H3.2 protein.
          Length = 980

 Score = 28.3 bits (60), Expect = 3.6
 Identities = 12/25 (48%), Positives = 14/25 (56%)
 Frame = -1

Query: 218 ASEYYSYWSSDQNWFIHLHSRKYKK 144
           A+E    WS + NW  HL  RKY K
Sbjct: 113 ANEIDPGWSWEDNWHPHLDPRKYDK 137


>U13876-14|AAA21168.1| 2500|Caenorhabditis elegans Not-like (yeast
            ccr4/not complexcomponent) protein 1 protein.
          Length = 2500

 Score = 27.5 bits (58), Expect = 6.3
 Identities = 14/43 (32%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
 Frame = +2

Query: 371  LYHLF-NIFNNNYLSHEQVITKNLRSRSARFSAGKDSASQMND 496
            LY+ F N   N YL H++ + KNL S     +  ++    +ND
Sbjct: 1217 LYNQFVNAIENPYLDHDRQLLKNLGSWLGAITIARNKPILLND 1259


>U12965-5|AAA20612.2|  346|Caenorhabditis elegans Serpentine
           receptor, class b (beta)protein 11 protein.
          Length = 346

 Score = 27.5 bits (58), Expect = 6.3
 Identities = 16/38 (42%), Positives = 21/38 (55%)
 Frame = +3

Query: 291 NFQLKLPEIILSMGVSLIAAGMVHRICFTTCLIFSIIT 404
           +F   L  I +S  VSL+A  M H    TT +I SII+
Sbjct: 50  SFHGNLKTIFISYFVSLVAFSMTHLTTSTTQIIKSIIS 87


>AC024849-4|AAL27260.2|  152|Caenorhabditis elegans Hypothetical
           protein Y67D8B.5 protein.
          Length = 152

 Score = 27.1 bits (57), Expect = 8.3
 Identities = 10/31 (32%), Positives = 20/31 (64%)
 Frame = +3

Query: 366 ICFTTCLIFSIITIYHMNKLSQKTYAAVAPV 458
           ICF +CLI+ I+++ ++ K  + T+  +  V
Sbjct: 8   ICFVSCLIWFIVSLMYIKKEKECTHLTMIVV 38


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,014,056
Number of Sequences: 27780
Number of extensions: 201833
Number of successful extensions: 510
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 506
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 510
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1038911524
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)