Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0006_D09
         (527 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g77350.1 68414.m09008 expressed protein                             68   3e-12
At1g56310.1 68414.m06473 3'-5' exonuclease domain-containing pro...    31   0.36 
At2g21840.1 68415.m02595 CHP-rich zinc finger protein, putative        29   1.5  
At1g47530.1 68414.m05275 ripening-responsive protein, putative s...    29   1.9  
At3g21340.1 68416.m02695 leucine-rich repeat protein kinase, put...    27   5.9  

>At1g77350.1 68414.m09008 expressed protein
          Length = 122

 Score = 68.1 bits (159), Expect = 3e-12
 Identities = 32/88 (36%), Positives = 54/88 (61%)
 Frame = +3

Query: 165 QMYKPILVRTPITIIFGGYLGSLMFMFLVTAVGNLEATLFGKNFQLKLPEIILSMGVSLI 344
           ++Y+  L  + +  I GG+  SL+F+F +T +GN + +      +     +IL+  ++LI
Sbjct: 24  EIYRGKLASSELFTILGGFTSSLLFLFSLTFIGNFQES---SGIKSGWGAVILAEIIALI 80

Query: 345 AAGMVHRICFTTCLIFSIITIYHMNKLS 428
           AAG VHR+C TTC +FS   +Y +NK+S
Sbjct: 81  AAGTVHRVCITTCFLFSAGLLYEVNKIS 108


>At1g56310.1 68414.m06473 3'-5' exonuclease domain-containing
           protein contains Pfam profile PF01612: 3'-5' exonuclease
          Length = 582

 Score = 31.5 bits (68), Expect = 0.36
 Identities = 11/22 (50%), Positives = 15/22 (68%)
 Frame = +2

Query: 353 YGPQNLLYHLFNIFNNNYLSHE 418
           YG +N+L   +NI N NYL H+
Sbjct: 248 YGSRNMLKQAYNIINKNYLQHD 269


>At2g21840.1 68415.m02595 CHP-rich zinc finger protein, putative
          Length = 746

 Score = 29.5 bits (63), Expect = 1.5
 Identities = 18/63 (28%), Positives = 28/63 (44%), Gaps = 1/63 (1%)
 Frame = -1

Query: 335 NSH**YNFW*LQLKVLSK*-CSF*ITNCCNEKHKHQRTEVASEYYSYWSSDQNWFIHLHS 159
           +SH  YNFW    +V     C     N  N++H H  T+V + +   WS   N+   +  
Sbjct: 630 HSHYFYNFWNNDSRVTRACECIGFPANVRNQRHVHTLTQVYTSHREKWSVRDNYMDRISY 689

Query: 158 RKY 150
           + Y
Sbjct: 690 KCY 692


>At1g47530.1 68414.m05275 ripening-responsive protein, putative
           similar to ripening regulated protein DDTFR18
           [Lycopersicon esculentum] GI:12231296; contains Pfam
           profile PF01554: Uncharacterized membrane protein family
          Length = 484

 Score = 29.1 bits (62), Expect = 1.9
 Identities = 15/43 (34%), Positives = 23/43 (53%)
 Frame = +3

Query: 321 LSMGVSLIAAGMVHRICFTTCLIFSIITIYHMNKLSQKTYAAV 449
           L +GV  I  GMV  IC  T ++  II   + NK +++  + V
Sbjct: 433 LDLGVQGIWGGMVAGICLQTLILIGIIYFTNWNKEAEQAESRV 475


>At3g21340.1 68416.m02695 leucine-rich repeat protein kinase,
           putative similar to light repressible receptor protein
           kinase [Arabidopsis thaliana] gi|1321686|emb|CAA66376;
           contains leucine rich repeat (LRR) domains,
           Pfam:PF00560; contains protein kinase domain,
           Pfam:PF00069
          Length = 880

 Score = 27.5 bits (58), Expect = 5.9
 Identities = 16/44 (36%), Positives = 21/44 (47%), Gaps = 1/44 (2%)
 Frame = +3

Query: 243 FLVTAVGNLEATLFGKNFQLKLPEIIL-SMGVSLIAAGMVHRIC 371
           FL      L   L G NF   +P+I+L   G+ LI  G  + IC
Sbjct: 457 FLADIKSLLVINLSGNNFNGSIPQILLQKKGLKLILEGNANLIC 500


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,042,191
Number of Sequences: 28952
Number of extensions: 177665
Number of successful extensions: 418
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 409
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 417
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 977150592
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)