Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0006_D08
(334 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC15A10.03c |rhp54|rad54|Rad54 homolog Rhp54|Schizosaccharomyc... 27 0.99
SPCC16A11.16c |||ARM1 family|Schizosaccharomyces pombe|chr 3|||M... 25 3.0
SPBC21D10.09c |||ubiquitin-protein ligase E3 |Schizosaccharomyce... 25 4.0
SPCC825.02 |||glucosidase II Gtb1 |Schizosaccharomyces pombe|chr... 24 5.3
SPBC1685.13 |||non classical export pathway protein |Schizosacch... 24 7.0
SPBPB2B2.18 |||dubious|Schizosaccharomyces pombe|chr 2|||Manual 24 7.0
SPCC320.13c |ark1|aim1, SPCC330.16|aurora-B kinase Ark1|Schizosa... 24 7.0
SPAC15A10.06 |||CPA1 sodium ion/proton antiporter|Schizosaccharo... 23 9.2
SPCPJ732.03 |meu15||sequence orphan|Schizosaccharomyces pombe|ch... 23 9.2
SPAC20H4.09 |||ATP-dependent RNA helicase, spliceosomal |Schizos... 23 9.2
SPCC11E10.07c |||translation initiation factor eIF2B alpha subun... 23 9.2
>SPAC15A10.03c |rhp54|rad54|Rad54 homolog Rhp54|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 852
Score = 26.6 bits (56), Expect = 0.99
Identities = 11/43 (25%), Positives = 25/43 (58%), Gaps = 1/43 (2%)
Frame = -3
Query: 311 FDLPVNTTRSLN-TSQE*TRGDGSLSSSVTLFSRFLIGKTNNV 186
+++P+ R + T ++ GD L+ + +RF+I +TN++
Sbjct: 471 YEIPILKGRDADGTEKDKENGDAKLAELAKIVNRFIIRRTNDI 513
>SPCC16A11.16c |||ARM1 family|Schizosaccharomyces pombe|chr
3|||Manual
Length = 388
Score = 25.0 bits (52), Expect = 3.0
Identities = 16/37 (43%), Positives = 22/37 (59%), Gaps = 3/37 (8%)
Frame = -3
Query: 320 NHLFDLPVNTTRSLNT-SQE*TRG--DGSLSSSVTLF 219
N L PVNTTR++N+ + +RG D S S + LF
Sbjct: 126 NQLIADPVNTTRTINSHNNSSSRGTDDSSTSQLLQLF 162
>SPBC21D10.09c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1610
Score = 24.6 bits (51), Expect = 4.0
Identities = 13/31 (41%), Positives = 17/31 (54%)
Frame = -2
Query: 159 HSLKTMLSTNYIKNT*LIMLVKYTLFTKTND 67
HSLK L T + +N L L+ LF+K D
Sbjct: 722 HSLKAHLPTIFDENKSLYSLLPVILFSKPED 752
>SPCC825.02 |||glucosidase II Gtb1 |Schizosaccharomyces pombe|chr
3|||Manual
Length = 506
Score = 24.2 bits (50), Expect = 5.3
Identities = 7/14 (50%), Positives = 10/14 (71%)
Frame = +2
Query: 293 YXPGDQKDDWICDC 334
Y P ++ DD +CDC
Sbjct: 95 YIPSNRVDDTVCDC 108
>SPBC1685.13 |||non classical export pathway protein
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 183
Score = 23.8 bits (49), Expect = 7.0
Identities = 9/21 (42%), Positives = 14/21 (66%)
Frame = +3
Query: 120 FLYNLLIALFLVNVCRAKNST 182
F++ L +A F+V + AKN T
Sbjct: 136 FMFGLYVASFIVQIFIAKNDT 156
>SPBPB2B2.18 |||dubious|Schizosaccharomyces pombe|chr 2|||Manual
Length = 175
Score = 23.8 bits (49), Expect = 7.0
Identities = 12/25 (48%), Positives = 14/25 (56%)
Frame = +3
Query: 120 FLYNLLIALFLVNVCRAKNSTTDVI 194
F N L LFLV VCR + T +I
Sbjct: 23 FESNWLFLLFLVRVCRQLKTVTVLI 47
>SPCC320.13c |ark1|aim1, SPCC330.16|aurora-B kinase
Ark1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 355
Score = 23.8 bits (49), Expect = 7.0
Identities = 8/21 (38%), Positives = 16/21 (76%)
Frame = -1
Query: 169 ARHTFTKNNAINKLYKKHIIN 107
+++ F NA++ L+KKH+I+
Sbjct: 190 SKYIFQMANALSYLHKKHVIH 210
>SPAC15A10.06 |||CPA1 sodium ion/proton
antiporter|Schizosaccharomyces pombe|chr 1|||Manual
Length = 569
Score = 23.4 bits (48), Expect = 9.2
Identities = 11/20 (55%), Positives = 13/20 (65%)
Frame = +1
Query: 166 VQKTARRTLLVFPMRNRLNK 225
V TA R + VFP+ N LNK
Sbjct: 357 VAVTASRYMNVFPLSNLLNK 376
>SPCPJ732.03 |meu15||sequence orphan|Schizosaccharomyces pombe|chr
3|||Manual
Length = 150
Score = 23.4 bits (48), Expect = 9.2
Identities = 10/24 (41%), Positives = 17/24 (70%)
Frame = +1
Query: 10 YKFNIFNLFMIYFKLPHRLVICFC 81
YK+ IF + M+Y++L L +C+C
Sbjct: 70 YKW-IFIIEMLYYELYLTLYVCWC 92
>SPAC20H4.09 |||ATP-dependent RNA helicase, spliceosomal
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 647
Score = 23.4 bits (48), Expect = 9.2
Identities = 11/27 (40%), Positives = 14/27 (51%)
Frame = +2
Query: 227 LQKKKENRHHVFIPAMCSVNEWYXPGD 307
LQK EN I + ++N Y PGD
Sbjct: 212 LQKPTENYVDSAIETVININSTYPPGD 238
>SPCC11E10.07c |||translation initiation factor eIF2B alpha
subunit|Schizosaccharomyces pombe|chr 3|||Manual
Length = 341
Score = 23.4 bits (48), Expect = 9.2
Identities = 12/41 (29%), Positives = 21/41 (51%)
Frame = -3
Query: 278 NTSQE*TRGDGSLSSSVTLFSRFLIGKTNNVRRAVFCTAHI 156
NT +E + + SLS+ +F RF+ ++V C H+
Sbjct: 67 NTLKEGVQNNISLSAGCDIFQRFVTRSLHDVGDFEQCKRHL 107
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,259,272
Number of Sequences: 5004
Number of extensions: 22974
Number of successful extensions: 75
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 75
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 75
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 93942212
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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