Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0006_D08
         (334 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_02_0647 - 19687142-19687145,19687244-19689352,19689764-19690617     28   1.6  
03_06_0292 - 32886148-32886354,32886997-32887154,32887265-328873...    27   3.7  
08_01_0501 + 4345522-4345720,4346598-4347167,4347294-4347366,435...    26   6.4  
08_02_0603 + 19208177-19210033,19210581-19210618,19210937-192110...    26   8.5  

>08_02_0647 - 19687142-19687145,19687244-19689352,19689764-19690617
          Length = 988

 Score = 28.3 bits (60), Expect = 1.6
 Identities = 11/22 (50%), Positives = 15/22 (68%)
 Frame = +1

Query: 31  LFMIYFKLPHRLVICFCK*SVF 96
           LF+ Y+ LPH+L +C    SVF
Sbjct: 425 LFLSYYDLPHQLKLCLLHISVF 446


>03_06_0292 -
           32886148-32886354,32886997-32887154,32887265-32887378,
           32887660-32887924
          Length = 247

 Score = 27.1 bits (57), Expect = 3.7
 Identities = 14/40 (35%), Positives = 22/40 (55%)
 Frame = -1

Query: 319 IIFLISRXIPLVH*THRRNKHVVTVLFLLL*PCLVDSSSG 200
           +I +IS  I ++   + RNKH + + FLLL    +  S G
Sbjct: 80  VIIIISPLIMMLPMIYFRNKHPINLFFLLLFTVCISFSVG 119


>08_01_0501 +
           4345522-4345720,4346598-4347167,4347294-4347366,
           4351133-4353092,4353465-4353840,4353932-4354326,
           4354597-4354765,4355444-4355518,4357699-4357826,
           4357988-4358213,4358290-4358417,4358505-4358768
          Length = 1520

 Score = 26.2 bits (55), Expect = 6.4
 Identities = 12/22 (54%), Positives = 13/22 (59%)
 Frame = +1

Query: 31  LFMIYFKLPHRLVICFCK*SVF 96
           L + YF LPH L  CF   SVF
Sbjct: 419 LSLSYFDLPHHLRTCFLYLSVF 440


>08_02_0603 +
           19208177-19210033,19210581-19210618,19210937-19211059,
           19211471-19211852
          Length = 799

 Score = 25.8 bits (54), Expect = 8.5
 Identities = 10/30 (33%), Positives = 18/30 (60%)
 Frame = +1

Query: 217 LNKVTEEEREPSPRVYSCDVFSERVVXTGR 306
           L+ + +E R P P + SC++  E ++  GR
Sbjct: 115 LSDLADEARAPLPSLSSCNLLLEALLSLGR 144


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,595,651
Number of Sequences: 37544
Number of extensions: 128848
Number of successful extensions: 305
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 304
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 305
length of database: 14,793,348
effective HSP length: 72
effective length of database: 12,090,180
effective search space used: 459426840
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)