Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0006_D08
         (334 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_20481| Best HMM Match : Pox_A_type_inc (HMM E-Value=5.60519e-45)    28   2.2  
SB_10046| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   6.6  
SB_48359| Best HMM Match : DUF1253 (HMM E-Value=5.6e-09)               26   8.8  

>SB_20481| Best HMM Match : Pox_A_type_inc (HMM E-Value=5.60519e-45)
          Length = 4160

 Score = 27.9 bits (59), Expect = 2.2
 Identities = 14/51 (27%), Positives = 23/51 (45%)
 Frame = +3

Query: 156 NVCRAKNSTTDVIGFPDEESTKQGYRRRKRTVTTCLFLRCVQ*TSGIXREI 308
           ++ R + S+TD+    DE   K  Y  RK       +  CV+    + RE+
Sbjct: 495 DITRVQGSSTDIERQRDEMGRKLAYSERKTQEMQAAYEDCVRKREALQREV 545


>SB_10046| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 197

 Score = 26.2 bits (55), Expect = 6.6
 Identities = 13/28 (46%), Positives = 18/28 (64%)
 Frame = -1

Query: 160 TFTKNNAINKLYKKHIINYVSKIHFIYK 77
           TFT+   + KL  + IINYV K + +YK
Sbjct: 53  TFTQ--VLEKLVYQQIINYVGKQNILYK 78


>SB_48359| Best HMM Match : DUF1253 (HMM E-Value=5.6e-09)
          Length = 210

 Score = 25.8 bits (54), Expect = 8.8
 Identities = 10/28 (35%), Positives = 15/28 (53%)
 Frame = -1

Query: 178 LFFARHTFTKNNAINKLYKKHIINYVSK 95
           LF+   TF     I +LY  H +N++ K
Sbjct: 41  LFYHHRTFENAEEIRRLYCLHAVNHILK 68


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,354,602
Number of Sequences: 59808
Number of extensions: 178927
Number of successful extensions: 358
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 349
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 358
length of database: 16,821,457
effective HSP length: 72
effective length of database: 12,515,281
effective search space used: 475580678
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)