Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0006_D08
         (334 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81585-4|CAB04687.1|  345|Caenorhabditis elegans Hypothetical pr...    27   3.3  
U53150-8|AAA96128.2|  378|Caenorhabditis elegans Hypothetical pr...    26   7.5  
U80931-1|AAB37998.2|  343|Caenorhabditis elegans Hypothetical pr...    25   10.0 
AL117204-8|CAB55123.1|  205|Caenorhabditis elegans Hypothetical ...    25   10.0 
AL021497-2|CAA16400.1|  606|Caenorhabditis elegans Hypothetical ...    25   10.0 

>Z81585-4|CAB04687.1|  345|Caenorhabditis elegans Hypothetical
           protein T05E12.4 protein.
          Length = 345

 Score = 27.1 bits (57), Expect = 3.3
 Identities = 14/26 (53%), Positives = 18/26 (69%), Gaps = 1/26 (3%)
 Frame = +1

Query: 163 AVQKTARRTLLV-FPMRNRLNKVTEE 237
           AV  +A RTL V FPM NR+ K+ E+
Sbjct: 114 AVVMSAVRTLSVLFPMHNRIQKINEK 139


>U53150-8|AAA96128.2|  378|Caenorhabditis elegans Hypothetical
           protein F20A1.2 protein.
          Length = 378

 Score = 25.8 bits (54), Expect = 7.5
 Identities = 20/70 (28%), Positives = 33/70 (47%)
 Frame = +3

Query: 120 FLYNLLIALFLVNVCRAKNSTTDVIGFPDEESTKQGYRRRKRTVTTCLFLRCVQ*TSGIX 299
           FL  +++ L +VN    K +  D   FP +E      RR++  V + L +  +Q TS + 
Sbjct: 209 FLCLMVLNLVIVN----KLAKIDAQQFPTKEMKGSPTRRKRSRVLSSLRITKLQITSTVR 264

Query: 300 REIKKMIGYV 329
             I  M+  V
Sbjct: 265 NAIYTMVAIV 274


>U80931-1|AAB37998.2|  343|Caenorhabditis elegans Hypothetical
           protein T01B11.1 protein.
          Length = 343

 Score = 25.4 bits (53), Expect = 10.0
 Identities = 10/32 (31%), Positives = 16/32 (50%)
 Frame = +3

Query: 186 DVIGFPDEESTKQGYRRRKRTVTTCLFLRCVQ 281
           + +     +S KQ  RRR + V  CL +  +Q
Sbjct: 232 ETVKIQSSQSIKQSNRRRHQAVRRCLMMATIQ 263


>AL117204-8|CAB55123.1|  205|Caenorhabditis elegans Hypothetical
           protein Y116A8C.17 protein.
          Length = 205

 Score = 25.4 bits (53), Expect = 10.0
 Identities = 10/32 (31%), Positives = 17/32 (53%)
 Frame = -2

Query: 183 SCCFLHGTHSLKTMLSTNYIKNT*LIMLVKYT 88
           +C F HG H L+   +T   +N   ++  K+T
Sbjct: 112 ACKFAHGVHELRCQQTTRNHRNYKTVLCDKFT 143


>AL021497-2|CAA16400.1|  606|Caenorhabditis elegans Hypothetical
           protein Y51A2D.4 protein.
          Length = 606

 Score = 25.4 bits (53), Expect = 10.0
 Identities = 10/17 (58%), Positives = 12/17 (70%)
 Frame = +3

Query: 180 TTDVIGFPDEESTKQGY 230
           TTD  GF  + +TKQGY
Sbjct: 407 TTDACGFCHDANTKQGY 423


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,084,144
Number of Sequences: 27780
Number of extensions: 132897
Number of successful extensions: 257
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 253
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 257
length of database: 12,740,198
effective HSP length: 72
effective length of database: 10,740,038
effective search space used: 408121444
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)