Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0006_D08
         (334 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride...    24   0.42 
DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride...    24   0.42 
DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride...    24   0.42 
DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride...    24   0.42 
DQ325132-1|ABD14146.1|  189|Apis mellifera complementary sex det...    23   1.3  
DQ325131-1|ABD14145.1|  189|Apis mellifera complementary sex det...    23   1.3  
AB201717-1|BAD90662.1|  107|Apis mellifera apime-corazonin prepr...    21   3.9  
DQ325083-1|ABD14097.1|  189|Apis mellifera complementary sex det...    20   6.8  
DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channe...    20   9.1  

>DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride
           channel variant 4 protein.
          Length = 489

 Score = 24.2 bits (50), Expect = 0.42
 Identities = 12/37 (32%), Positives = 16/37 (43%)
 Frame = +3

Query: 114 MCFLYNLLIALFLVNVCRAKNSTTDVIGFPDEESTKQ 224
           MCF+Y  L+    VN    K    +V+  P E    Q
Sbjct: 371 MCFIYASLLEFVCVNYVGRKRPMHNVVYRPGENPVTQ 407


>DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride
           channel variant 3 protein.
          Length = 475

 Score = 24.2 bits (50), Expect = 0.42
 Identities = 12/37 (32%), Positives = 16/37 (43%)
 Frame = +3

Query: 114 MCFLYNLLIALFLVNVCRAKNSTTDVIGFPDEESTKQ 224
           MCF+Y  L+    VN    K    +V+  P E    Q
Sbjct: 340 MCFIYASLLEFVCVNYVGRKRPMHNVVYRPGENPVTQ 376


>DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride
           channel variant 1 protein.
          Length = 509

 Score = 24.2 bits (50), Expect = 0.42
 Identities = 12/37 (32%), Positives = 16/37 (43%)
 Frame = +3

Query: 114 MCFLYNLLIALFLVNVCRAKNSTTDVIGFPDEESTKQ 224
           MCF+Y  L+    VN    K    +V+  P E    Q
Sbjct: 391 MCFIYASLLEFVCVNYVGRKRPMHNVVYRPGENPVTQ 427


>DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride
           channel protein.
          Length = 458

 Score = 24.2 bits (50), Expect = 0.42
 Identities = 12/37 (32%), Positives = 16/37 (43%)
 Frame = +3

Query: 114 MCFLYNLLIALFLVNVCRAKNSTTDVIGFPDEESTKQ 224
           MCF+Y  L+    VN    K    +V+  P E    Q
Sbjct: 340 MCFIYASLLEFVCVNYVGRKRPMHNVVYRPGENPVTQ 376


>DQ325132-1|ABD14146.1|  189|Apis mellifera complementary sex
           determiner protein.
          Length = 189

 Score = 22.6 bits (46), Expect = 1.3
 Identities = 9/14 (64%), Positives = 10/14 (71%)
 Frame = -1

Query: 148 NNAINKLYKKHIIN 107
           NN   KLYK +IIN
Sbjct: 110 NNNYKKLYKNYIIN 123



 Score = 20.6 bits (41), Expect = 5.2
 Identities = 10/22 (45%), Positives = 11/22 (50%)
 Frame = -1

Query: 148 NNAINKLYKKHIINYVSKIHFI 83
           NN  N  YKK   NY+  I  I
Sbjct: 106 NNNYNNNYKKLYKNYIINIEQI 127


>DQ325131-1|ABD14145.1|  189|Apis mellifera complementary sex
           determiner protein.
          Length = 189

 Score = 22.6 bits (46), Expect = 1.3
 Identities = 9/14 (64%), Positives = 10/14 (71%)
 Frame = -1

Query: 148 NNAINKLYKKHIIN 107
           NN   KLYK +IIN
Sbjct: 110 NNNYKKLYKNYIIN 123



 Score = 20.6 bits (41), Expect = 5.2
 Identities = 10/22 (45%), Positives = 11/22 (50%)
 Frame = -1

Query: 148 NNAINKLYKKHIINYVSKIHFI 83
           NN  N  YKK   NY+  I  I
Sbjct: 106 NNNYNNNYKKLYKNYIINIEQI 127


>AB201717-1|BAD90662.1|  107|Apis mellifera apime-corazonin
           preprohormone protein.
          Length = 107

 Score = 21.0 bits (42), Expect = 3.9
 Identities = 8/22 (36%), Positives = 13/22 (59%)
 Frame = +1

Query: 190 LLVFPMRNRLNKVTEEEREPSP 255
           LL FP R+    +  + R+P+P
Sbjct: 81  LLNFPKRSFSENMINDHRQPAP 102


>DQ325083-1|ABD14097.1|  189|Apis mellifera complementary sex
           determiner protein.
          Length = 189

 Score = 20.2 bits (40), Expect = 6.8
 Identities = 9/21 (42%), Positives = 13/21 (61%), Gaps = 1/21 (4%)
 Frame = -1

Query: 166 RHTFTKNNAINKL-YKKHIIN 107
           ++ +  NN   KL YK +IIN
Sbjct: 103 KYNYNNNNYNKKLYYKNYIIN 123


>DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channel
           protein.
          Length = 463

 Score = 19.8 bits (39), Expect = 9.1
 Identities = 8/24 (33%), Positives = 13/24 (54%)
 Frame = -1

Query: 163 HTFTKNNAINKLYKKHIINYVSKI 92
           HT T  N   +LY+   + Y S++
Sbjct: 101 HTITSPNKFVRLYQDGRVLYSSRL 124


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 85,739
Number of Sequences: 438
Number of extensions: 1663
Number of successful extensions: 11
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 50
effective length of database: 124,443
effective search space used:  7466580
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)