Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0006_D07
         (546 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC3G6.09c |tps2||trehalose-phosphate synthase Tps2 |Schizosacc...    26   3.2  
SPAC22H10.12c |gdi1|sec19|GDP dissociation inhibitor Gdi1 |Schiz...    26   4.2  
SPAC1486.03c |||RNA-binding splicing factor|Schizosaccharomyces ...    25   5.5  
SPAC869.07c |mel1||alpha-galactosidase |Schizosaccharomyces pomb...    25   5.5  
SPBC405.06 |||DNAJ protein Xdj1 |Schizosaccharomyces pombe|chr 2...    25   7.3  
SPAC16A10.01 |||DUF1212 family protein|Schizosaccharomyces pombe...    25   9.6  
SPAC9G1.10c |||inositol polyphosphate phosphatase |Schizosacchar...    25   9.6  

>SPAC3G6.09c |tps2||trehalose-phosphate synthase Tps2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 849

 Score = 26.2 bits (55), Expect = 3.2
 Identities = 12/37 (32%), Positives = 18/37 (48%)
 Frame = -1

Query: 459 QWDDWLHRNDVPNLCTGP*IFLHTLSRHLLPSILHQQ 349
           +W  +   N V N   G  I +H  S  LLP ++ +Q
Sbjct: 202 RWSQYFADNIVSNYRPGDLILIHDYSLFLLPRLIRKQ 238


>SPAC22H10.12c |gdi1|sec19|GDP dissociation inhibitor Gdi1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 440

 Score = 25.8 bits (54), Expect = 4.2
 Identities = 7/27 (25%), Positives = 18/27 (66%)
 Frame = +1

Query: 217 GLNRNWIIRILPTFGFGNRDILSMIVF 297
           G +R+W + ++P F   N D+ +++++
Sbjct: 66  GRDRDWCVDLVPKFLMANGDLTNILIY 92


>SPAC1486.03c |||RNA-binding splicing factor|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 797

 Score = 25.4 bits (53), Expect = 5.5
 Identities = 8/17 (47%), Positives = 12/17 (70%)
 Frame = +3

Query: 261 IWKQRYFVNDSFFDYKN 311
           +WK  YF+ +SF  +KN
Sbjct: 378 VWKHPYFMLESFLSWKN 394


>SPAC869.07c |mel1||alpha-galactosidase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 436

 Score = 25.4 bits (53), Expect = 5.5
 Identities = 12/39 (30%), Positives = 20/39 (51%), Gaps = 3/39 (7%)
 Frame = -2

Query: 428 FQIYAQGLKFFCILYPGTFYHPSCISSTFS---TDHQKY 321
           F +Y+   K+ C  +PG+  H    + TF+    D+ KY
Sbjct: 115 FGMYSSAGKYTCAGFPGSLNHEQIDADTFADWGVDYLKY 153


>SPBC405.06 |||DNAJ protein Xdj1 |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 413

 Score = 25.0 bits (52), Expect = 7.3
 Identities = 8/12 (66%), Positives = 9/12 (75%)
 Frame = -2

Query: 98  CDNKNVKSHIKH 63
           CD K VK H+KH
Sbjct: 167 CDGKGVKQHLKH 178


>SPAC16A10.01 |||DUF1212 family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 830

 Score = 24.6 bits (51), Expect = 9.6
 Identities = 14/32 (43%), Positives = 17/32 (53%), Gaps = 1/32 (3%)
 Frame = -2

Query: 383 PGTF-YHPSCISSTFSTDHQKYGPRIFVVKKT 291
           P TF Y P C+   F    Q Y P +FVV+ T
Sbjct: 430 PATFLYLPDCMFVYFKKLEQ-YSPDVFVVRVT 460


>SPAC9G1.10c |||inositol polyphosphate phosphatase
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1191

 Score = 24.6 bits (51), Expect = 9.6
 Identities = 10/26 (38%), Positives = 14/26 (53%)
 Frame = +3

Query: 330  MIGGEGAADARWMVKGAWIEYAKKFK 407
            M+  +       +VK  WIEYA +FK
Sbjct: 1127 MVNAQSQGSTWDVVKRKWIEYADEFK 1152


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,415,527
Number of Sequences: 5004
Number of extensions: 53691
Number of successful extensions: 130
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 127
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 130
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 225926624
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)