Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0006_D07
(546 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
10_08_0607 + 19168164-19168358,19168594-19168716,19168791-191689... 67 1e-11
10_08_0605 + 19158167-19158309,19158726-19158834,19159099-191592... 52 2e-07
06_03_0934 - 26073084-26073220,26073296-26073345,26073465-260736... 35 0.049
02_04_0238 + 21186072-21186883,21187315-21189346 31 0.45
06_03_0598 + 22621765-22624795,22624903-22625066,22625290-226253... 29 3.2
06_03_0536 + 21906583-21908037 29 3.2
04_04_1571 + 34504087-34504421,34505002-34505731,34506091-345120... 28 5.6
01_07_0270 - 42417782-42417850,42418207-42418342,42418826-424191... 28 5.6
01_01_1237 - 10047417-10047934,10048899-10049136 28 5.6
06_01_0601 + 4337575-4340149,4340566-4340978 27 7.4
04_03_0970 + 21338072-21338074,21338192-21338240,21338688-213389... 27 9.8
02_04_0177 + 20669053-20669055,20669150-20669198,20669680-206699... 27 9.8
>10_08_0607 +
19168164-19168358,19168594-19168716,19168791-19168946,
19169129-19169314,19169467-19169583,19169721-19169774,
19169854-19169925,19170430-19170535,19170658-19170754,
19171090-19171184,19172318-19172420,19172699-19172886,
19174928-19175183,19177187-19177325
Length = 628
Score = 66.9 bits (156), Expect = 1e-11
Identities = 40/107 (37%), Positives = 58/107 (54%), Gaps = 2/107 (1%)
Frame = +3
Query: 168 LGAPGDYDGEKLPSGQ-WFKQKLDHSNPSDLRIWKQRYFVNDSFFDYK-NPGPIFLMIGG 341
+ A G G L + + W Q+LDH +P+D R +KQRY+ F DY GP+FL I G
Sbjct: 37 IAAGGGAAGRHLTTEERWMDQRLDHFSPTDHRQFKQRYY---EFADYHAGGGPVFLRICG 93
Query: 342 EGAADARWMVKGAWIEYAKKFKALCINLEHRFYGASHPTDDLSVKNL 482
E + + + +KKF A + EHR+YG S P + L+ +NL
Sbjct: 94 ESSCNG--IPNDYLAVLSKKFGAAVVTPEHRYYGKSSPFESLTTENL 138
>10_08_0605 +
19158167-19158309,19158726-19158834,19159099-19159224,
19159388-19159543,19159623-19159805,19159904-19160020,
19160528-19160581,19160661-19160732,19160947-19161058,
19161188-19161284,19161434-19161528,19162093-19162167,
19162307-19162390,19162602-19162700,19163167-19163207
Length = 520
Score = 52.4 bits (120), Expect = 2e-07
Identities = 33/81 (40%), Positives = 49/81 (60%), Gaps = 3/81 (3%)
Frame = +3
Query: 249 SDLRIWKQRYFVNDSFFDY-KNP-GPIFLMIGGEGAADARWMVKGAWIEY-AKKFKALCI 419
+D R +KQRY+ F DY + P GPIFL I GE + + + +++ AKKF A +
Sbjct: 84 ADHRQFKQRYY---EFLDYYRAPKGPIFLYICGESSCNG---IPNSYLAVMAKKFGAAVV 137
Query: 420 NLEHRFYGASHPTDDLSVKNL 482
+ EHR+YG S P + L+ +NL
Sbjct: 138 SPEHRYYGKSSPFESLTTENL 158
>06_03_0934 -
26073084-26073220,26073296-26073345,26073465-26073634,
26073651-26073803,26073877-26074032,26074227-26074350,
26075066-26075178,26076336-26076469,26077391-26077578,
26077718-26078139
Length = 548
Score = 34.7 bits (76), Expect = 0.049
Identities = 23/72 (31%), Positives = 36/72 (50%), Gaps = 8/72 (11%)
Frame = +3
Query: 171 GAPGDYDGEKLPSGQWFKQKLDHSN--PSDLRIWKQRYFVNDSFFDY-----KNP-GPIF 326
G G K + +F Q+LDH P+ ++ Q+Y VND+F+ + P GPIF
Sbjct: 71 GGNGTAAAAKPFTAHYFPQELDHFTFTPNASAVFYQKYLVNDTFWRRSAAAGETPAGPIF 130
Query: 327 LMIGGEGAADAR 362
+ G EG + +
Sbjct: 131 VYTGNEGDIECK 142
>02_04_0238 + 21186072-21186883,21187315-21189346
Length = 947
Score = 31.5 bits (68), Expect = 0.45
Identities = 13/39 (33%), Positives = 22/39 (56%)
Frame = +3
Query: 312 PGPIFLMIGGEGAADARWMVKGAWIEYAKKFKALCINLE 428
P +FL +G E A R +++ E+ K+FK +C+ E
Sbjct: 797 PNLLFLRLGSETAPQERLIIRDQCFEHLKEFKFICLLTE 835
>06_03_0598 +
22621765-22624795,22624903-22625066,22625290-22625328,
22625479-22625487
Length = 1080
Score = 28.7 bits (61), Expect = 3.2
Identities = 14/47 (29%), Positives = 29/47 (61%)
Frame = +1
Query: 178 PATTTEKNYLLDNGLNRNWIIRILPTFGFGNRDILSMIVFLTTKILG 318
PA+ ++ N+L D L++N + ++P+ FGN + +IV + ++ G
Sbjct: 165 PASLSQCNHLKDIDLSKNKLKGMIPS-DFGNLPKMQIIVLASNRLTG 210
>06_03_0536 + 21906583-21908037
Length = 484
Score = 28.7 bits (61), Expect = 3.2
Identities = 14/47 (29%), Positives = 23/47 (48%), Gaps = 1/47 (2%)
Frame = +3
Query: 114 WRAQSRNYFRLGRSKGGNLGAPGDY-DGEKLPSGQWFKQKLDHSNPS 251
W + + G +GG + APG++ DG P QW K+ + P+
Sbjct: 112 WARRGARHLLDGLPQGGGIDAPGEFLDGFHEPP-QWLKEAAARTRPA 157
>04_04_1571 + 34504087-34504421,34505002-34505731,34506091-34512077,
34512493-34513964,34514114-34514377,34514761-34514978,
34515759-34516030,34516190-34516559,34516578-34516797,
34516819-34518931,34518941-34519193,34519269-34519401,
34520597-34521114,34521207-34522115,34522195-34522368,
34522833-34522882,34523963-34524035,34524413-34524477,
34524736-34525522,34525622-34525878,34525989-34526109,
34526315-34526956
Length = 5320
Score = 27.9 bits (59), Expect = 5.6
Identities = 12/24 (50%), Positives = 16/24 (66%), Gaps = 3/24 (12%)
Frame = -2
Query: 395 CILYPGTFYHPS---CISSTFSTD 333
CIL P F+HP+ C+SST + D
Sbjct: 3788 CILSPTAFFHPADSRCLSSTANAD 3811
>01_07_0270 -
42417782-42417850,42418207-42418342,42418826-42419108,
42419459-42419507,42419614-42419616
Length = 179
Score = 27.9 bits (59), Expect = 5.6
Identities = 13/31 (41%), Positives = 17/31 (54%)
Frame = +3
Query: 156 KGGNLGAPGDYDGEKLPSGQWFKQKLDHSNP 248
+GG GAPGD+ GEK + F+ S P
Sbjct: 131 RGGPRGAPGDFGGEKGGAPAEFQPSFRGSRP 161
>01_01_1237 - 10047417-10047934,10048899-10049136
Length = 251
Score = 27.9 bits (59), Expect = 5.6
Identities = 15/37 (40%), Positives = 20/37 (54%), Gaps = 2/37 (5%)
Frame = +3
Query: 156 KGGNLGAPGDYDGEKLPSGQWFKQKLDHSN--PSDLR 260
+G + G+YDGE+ SGQ F + H P DLR
Sbjct: 135 EGSSYFFSGNYDGEQCESGQRFAIAVAHGQGLPPDLR 171
>06_01_0601 + 4337575-4340149,4340566-4340978
Length = 995
Score = 27.5 bits (58), Expect = 7.4
Identities = 9/22 (40%), Positives = 13/22 (59%)
Frame = +2
Query: 317 AHISDDRWRRCC*CKMDGKRCL 382
A + D WR+CC C+ D C+
Sbjct: 961 ARLKDGAWRKCC-CEDDNDHCI 981
>04_03_0970 +
21338072-21338074,21338192-21338240,21338688-21338970,
21339570-21339705,21339761-21339769
Length = 159
Score = 27.1 bits (57), Expect = 9.8
Identities = 10/15 (66%), Positives = 12/15 (80%)
Frame = +3
Query: 156 KGGNLGAPGDYDGEK 200
+GG GAPGD+ GEK
Sbjct: 131 RGGPRGAPGDFGGEK 145
>02_04_0177 +
20669053-20669055,20669150-20669198,20669680-20669962,
20670526-20670661,20671014-20671094
Length = 183
Score = 27.1 bits (57), Expect = 9.8
Identities = 10/15 (66%), Positives = 12/15 (80%)
Frame = +3
Query: 156 KGGNLGAPGDYDGEK 200
+GG GAPGD+ GEK
Sbjct: 131 RGGPRGAPGDFGGEK 145
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,015,426
Number of Sequences: 37544
Number of extensions: 334806
Number of successful extensions: 824
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 810
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 823
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1222086348
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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