Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0006_D07
         (546 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_817| Best HMM Match : Peptidase_S28 (HMM E-Value=0)                113   7e-26
SB_51847| Best HMM Match : Peptidase_S28 (HMM E-Value=2.7e-33)         64   7e-11
SB_13139| Best HMM Match : Peptidase_S28 (HMM E-Value=0)               56   2e-08
SB_40562| Best HMM Match : No HMM Matches (HMM E-Value=.)              40   0.002
SB_57621| Best HMM Match : Spermine_synth (HMM E-Value=0.1)            29   2.5  
SB_32261| Best HMM Match : rve (HMM E-Value=3.2e-14)                   28   5.7  

>SB_817| Best HMM Match : Peptidase_S28 (HMM E-Value=0)
          Length = 826

 Score =  113 bits (273), Expect = 7e-26
 Identities = 55/113 (48%), Positives = 71/113 (62%)
 Frame = +3

Query: 144 LGRSKGGNLGAPGDYDGEKLPSGQWFKQKLDHSNPSDLRIWKQRYFVNDSFFDYKNPGPI 323
           LGR KGG L AP    G   P   WF Q+LDH + S+   WKQR++ ND+F   K+  P+
Sbjct: 61  LGRPKGGMLQAPKIPLGFSAPPENWFIQRLDHFDDSNTETWKQRFYYNDTFRKTKD-SPV 119

Query: 324 FLMIGGEGAADARWMVKGAWIEYAKKFKALCINLEHRFYGASHPTDDLSVKNL 482
           FLM+GGEGA    W++ G  ++YA+ F A+   LEHRFYG SHP  D+S  NL
Sbjct: 120 FLMVGGEGAISPVWVLIGNMMKYAEGFGAMAFILEHRFYGQSHPRSDMSDANL 172


>SB_51847| Best HMM Match : Peptidase_S28 (HMM E-Value=2.7e-33)
          Length = 1224

 Score = 64.1 bits (149), Expect = 7e-11
 Identities = 39/105 (37%), Positives = 50/105 (47%), Gaps = 2/105 (1%)
 Frame = +3

Query: 219 FKQKLDHSNPSDLRIWKQRYFVNDSFFDYKNPGPIFLMIGGEGAADARWMVKGAWIEYAK 398
           F+Q +DH N      +KQRY   + ++D K  GPIF   G EG     W   G   E AK
Sbjct: 29  FEQTVDHFNFIQSGTFKQRYLYTEKYWDGK--GPIFFYSGNEGGITGFWENSGFVFEAAK 86

Query: 399 KFKALCINLEHRFYGASHP--TDDLSVKNLPVFIILSSTC*FGQL 527
            F AL I  EHR+YG S P   D   ++N+    I  +   F  L
Sbjct: 87  NFSALVIFGEHRYYGESLPFGQDSFKIENIGYLSIEQALADFATL 131


>SB_13139| Best HMM Match : Peptidase_S28 (HMM E-Value=0)
          Length = 563

 Score = 55.6 bits (128), Expect = 2e-08
 Identities = 33/93 (35%), Positives = 53/93 (56%), Gaps = 2/93 (2%)
 Frame = +3

Query: 210 GQWFKQKLDHSNPSDL-RIWKQRYFVNDSFFDYKNP-GPIFLMIGGEGAADARWMVKGAW 383
           G  F+Q +DH   +   R + QRY++N +F  +K P GP+ L +GGE      + + G  
Sbjct: 114 GYDFEQYIDHFEFTPRPRTYLQRYWMNRAF--WKGPDGPVLLYVGGESVLSGGY-IAGHI 170

Query: 384 IEYAKKFKALCINLEHRFYGASHPTDDLSVKNL 482
           ++ AK++ AL   +EHR+YG S+    L  KN+
Sbjct: 171 VDIAKEYGALLFAVEHRYYGKSNFFGCLKTKNM 203


>SB_40562| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 150

 Score = 39.5 bits (88), Expect = 0.002
 Identities = 22/60 (36%), Positives = 29/60 (48%)
 Frame = +3

Query: 213 QWFKQKLDHSNPSDLRIWKQRYFVNDSFFDYKNPGPIFLMIGGEGAADARWMVKGAWIEY 392
           ++F QKLDH N      + QRY VN    +++  GPIF   G EG  D  W       +Y
Sbjct: 52  KYFTQKLDHFNFRTSATFSQRYLVN--IANWRKGGPIFFYTGNEG--DITWFANNTSPKY 107


>SB_57621| Best HMM Match : Spermine_synth (HMM E-Value=0.1)
          Length = 627

 Score = 29.1 bits (62), Expect = 2.5
 Identities = 15/40 (37%), Positives = 21/40 (52%)
 Frame = +1

Query: 427 NIVSMEPVIPLMTSVSRIYQYLSSYQALADLANFISAMND 546
           N+   E    LM  VSR Y++ S Y+ L DL +    +ND
Sbjct: 12  NLFGTEQWNKLMKEVSRPYEWHSEYEILCDLMHKYVKLND 51


>SB_32261| Best HMM Match : rve (HMM E-Value=3.2e-14)
          Length = 628

 Score = 27.9 bits (59), Expect = 5.7
 Identities = 13/41 (31%), Positives = 19/41 (46%)
 Frame = +3

Query: 189 DGEKLPSGQWFKQKLDHSNPSDLRIWKQRYFVNDSFFDYKN 311
           D   L   QW KQ   H  P+ +R +  R   + +  DYK+
Sbjct: 165 DSANLDCKQWSKQTFKHKGPTHIRTFVHRNVDDAAKQDYKD 205


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,382,673
Number of Sequences: 59808
Number of extensions: 373391
Number of successful extensions: 717
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 666
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 715
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1252112599
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)