Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0006_D07
         (546 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g36190.1 68417.m05149 serine carboxypeptidase S28 family prot...    73   1e-13
At4g36195.1 68417.m05150 serine carboxypeptidase S28 family prot...    72   3e-13
At2g24280.1 68415.m02901 serine carboxypeptidase S28 family prot...    66   2e-11
At5g65760.1 68418.m08275 serine carboxypeptidase S28 family prot...    59   2e-09
At5g22860.2 68418.m02673 serine carboxypeptidase S28 family prot...    43   1e-04
At5g22860.1 68418.m02672 serine carboxypeptidase S28 family prot...    43   1e-04
At5g02860.1 68418.m00229 pentatricopeptide (PPR) repeat-containi...    31   0.66 
At3g28730.1 68416.m03587 structure-specific recognition protein ...    30   1.2  
At5g19530.1 68418.m02326 spermine/spermidine synthase family pro...    28   4.7  
At4g18670.1 68417.m02762 leucine-rich repeat family protein / ex...    28   4.7  
At5g07340.1 68418.m00838 calnexin, putative identical to calnexi...    27   8.2  
At1g57580.1 68414.m06534 F-box family protein contains Pfam:PF00...    27   8.2  

>At4g36190.1 68417.m05149 serine carboxypeptidase S28 family protein
           contains Pfam PF05577: Serine carboxypeptidase S28
          Length = 493

 Score = 72.9 bits (171), Expect = 1e-13
 Identities = 42/92 (45%), Positives = 55/92 (59%), Gaps = 3/92 (3%)
 Frame = +3

Query: 216 WFKQKLDHSNPSDLRIWKQRYFVNDSFFDYKN--PGPIFLMIGGEGAADARWMVKGAWIE 389
           WF Q LDH +PSD R ++QRY+    + D+     GPIFLMI GEG  +    +   +I 
Sbjct: 49  WFTQTLDHYSPSDHRKFRQRYY---EYLDHLRVPDGPIFLMICGEGPCNG---ITNNYIS 102

Query: 390 Y-AKKFKALCINLEHRFYGASHPTDDLSVKNL 482
             AKKF A  ++LEHR+YG S P   L+ KNL
Sbjct: 103 VLAKKFDAGIVSLEHRYYGKSSPFKSLATKNL 134


>At4g36195.1 68417.m05150 serine carboxypeptidase S28 family protein
           contains Pfam PF05577: Serine carboxypeptidase S28
          Length = 488

 Score = 71.7 bits (168), Expect = 3e-13
 Identities = 41/92 (44%), Positives = 55/92 (59%), Gaps = 3/92 (3%)
 Frame = +3

Query: 216 WFKQKLDHSNPSDLRIWKQRYFVNDSFFDYKN--PGPIFLMIGGEGAADARWMVKGAWIE 389
           WF Q LDH +PSD R +KQRY+    + D+     GPIF+MI GEG  +    +   +I 
Sbjct: 49  WFNQTLDHYSPSDHREFKQRYY---EYLDHLRVPDGPIFMMICGEGPCNG---IPNDYIT 102

Query: 390 Y-AKKFKALCINLEHRFYGASHPTDDLSVKNL 482
             AKKF A  ++LEHR+YG S P   L+ +NL
Sbjct: 103 VLAKKFDAGIVSLEHRYYGKSSPFKSLATENL 134


>At2g24280.1 68415.m02901 serine carboxypeptidase S28 family protein
           contains Pfam profile: PF05577 Serine carboxypeptidase
           S28
          Length = 494

 Score = 65.7 bits (153), Expect = 2e-11
 Identities = 36/100 (36%), Positives = 55/100 (55%), Gaps = 2/100 (2%)
 Frame = +3

Query: 213 QWFKQKLDHSN--PSDLRIWKQRYFVNDSFFDYKNPGPIFLMIGGEGAADARWMVKGAWI 386
           ++F Q LDH +  P   +++ Q+Y +N+ F  ++  GPIF+  G EG  D      G  +
Sbjct: 49  RYFPQNLDHFSFTPDSYKVFHQKYLINNRF--WRKGGPIFVYTGNEGDIDWFASNTGFML 106

Query: 387 EYAKKFKALCINLEHRFYGASHPTDDLSVKNLPVFIILSS 506
           + A KF+AL + +EHRFYG S P    S K+      L+S
Sbjct: 107 DIAPKFRALLVFIEHRFYGESTPFGKKSHKSAETLGYLNS 146


>At5g65760.1 68418.m08275 serine carboxypeptidase S28 family protein
           similar to SP|P42785 Lysosomal Pro-X carboxypeptidase
           precursor (EC 3.4.16.2) (Prolylcarboxypeptidase) (PRCP)
           (Proline carboxypeptidase) {Homo sapiens}; contains Pfam
           profile PF05577: Serine carboxypeptidase S28
          Length = 515

 Score = 58.8 bits (136), Expect = 2e-09
 Identities = 35/84 (41%), Positives = 46/84 (54%), Gaps = 3/84 (3%)
 Frame = +3

Query: 213 QWFKQKLDHSNPSDLRIWKQRYFVN-DSFFDYKNPGPIFLMIGGEGAADARWMV--KGAW 383
           ++F Q+LDH + +DL  + QRY +N D +      GPIFL  G EG  D  W     G  
Sbjct: 61  KFFSQQLDHFSFADLPKFSQRYLINSDHWLGASALGPIFLYCGNEG--DIEWFATNSGFI 118

Query: 384 IEYAKKFKALCINLEHRFYGASHP 455
            + A KF AL +  EHR+YG S P
Sbjct: 119 WDIAPKFGALLVFPEHRYYGESMP 142


>At5g22860.2 68418.m02673 serine carboxypeptidase S28 family protein
           contains Pfam profile: PF05577 serine carboxypeptidase
           S28
          Length = 439

 Score = 43.2 bits (97), Expect = 1e-04
 Identities = 24/83 (28%), Positives = 40/83 (48%), Gaps = 3/83 (3%)
 Frame = +3

Query: 216 WFKQKLDHSN--PSDLRIWKQRYFVNDSFFD-YKNPGPIFLMIGGEGAADARWMVKGAWI 386
           +F Q LDH    P     ++QRY ++ + +   K   PI   +G E + D+     G   
Sbjct: 58  YFNQTLDHFTFTPESYMTFQQRYAIDSTHWGGAKANAPILAFLGEESSLDSDLAAIGFLR 117

Query: 387 EYAKKFKALCINLEHRFYGASHP 455
           +   +  AL + +EHR+YG + P
Sbjct: 118 DNGPRLNALLVYIEHRYYGETMP 140


>At5g22860.1 68418.m02672 serine carboxypeptidase S28 family protein
           contains Pfam profile: PF05577 serine carboxypeptidase
           S28
          Length = 502

 Score = 43.2 bits (97), Expect = 1e-04
 Identities = 24/83 (28%), Positives = 40/83 (48%), Gaps = 3/83 (3%)
 Frame = +3

Query: 216 WFKQKLDHSN--PSDLRIWKQRYFVNDSFFD-YKNPGPIFLMIGGEGAADARWMVKGAWI 386
           +F Q LDH    P     ++QRY ++ + +   K   PI   +G E + D+     G   
Sbjct: 58  YFNQTLDHFTFTPESYMTFQQRYAIDSTHWGGAKANAPILAFLGEESSLDSDLAAIGFLR 117

Query: 387 EYAKKFKALCINLEHRFYGASHP 455
           +   +  AL + +EHR+YG + P
Sbjct: 118 DNGPRLNALLVYIEHRYYGETMP 140


>At5g02860.1 68418.m00229 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile PF01535: PPR repeat
          Length = 819

 Score = 30.7 bits (66), Expect = 0.66
 Identities = 16/42 (38%), Positives = 23/42 (54%)
 Frame = +3

Query: 120 AQSRNYFRLGRSKGGNLGAPGDYDGEKLPSGQWFKQKLDHSN 245
           +++RN  R+G+S+  NLG P  Y G   P GQ   + L   N
Sbjct: 70  SRNRNRTRIGKSRDPNLGKPWSYHGLS-PQGQQVLRSLIEPN 110


>At3g28730.1 68416.m03587 structure-specific recognition protein 1 /
           high mobility group protein / HMG protein nearly
           identical to SP|Q05153 Structure-specific recognition
           protein 1 homolog (HMG protein) {Arabidopsis thaliana};
           contains Pfam profile PF00505: HMG (high mobility group)
           box; contains Pfam profile PF03531: Structure-specific
           recognition protein
          Length = 646

 Score = 29.9 bits (64), Expect = 1.2
 Identities = 20/60 (33%), Positives = 29/60 (48%), Gaps = 4/60 (6%)
 Frame = +3

Query: 177 PGDYDGE--KLPSGQWFKQKLDHSNPSDLR--IWKQRYFVNDSFFDYKNPGPIFLMIGGE 344
           PG   GE  K+   +W +   D   P + +  + KQRY   D   DYKNP P+ +  G +
Sbjct: 585 PGIAFGEVGKVLGDKWRQMSADDKEPYEAKAQVDKQRY--KDEISDYKNPQPMNVDSGND 642


>At5g19530.1 68418.m02326 spermine/spermidine synthase family
           protein similar to SP|P09158 Spermidine synthase (EC
           2.5.1.16) (Putrescine aminopropyltransferase)
           {Escherichia coli}; contains Pfam profile PF01564:
           Spermine/spermidine synthase
          Length = 339

 Score = 27.9 bits (59), Expect = 4.7
 Identities = 14/36 (38%), Positives = 23/36 (63%)
 Frame = +3

Query: 282 VNDSFFDYKNPGPIFLMIGGEGAADARWMVKGAWIE 389
           ++ +   + NP  +F+M GGEG+A AR ++K   IE
Sbjct: 97  IHPALLFHPNPKTVFIMGGGEGSA-AREILKHTTIE 131


>At4g18670.1 68417.m02762 leucine-rich repeat family protein /
           extensin family protein similar to extensin-like protein
           [Lycopersicon esculentum] gi|5917664|gb|AAD55979;
           contains leucine-rich repeats, Pfam:PF00560; contains
           proline rich extensin domains, INTERPRO:IPR002965
          Length = 839

 Score = 27.9 bits (59), Expect = 4.7
 Identities = 15/41 (36%), Positives = 23/41 (56%), Gaps = 4/41 (9%)
 Frame = -1

Query: 441 HRNDVPNLCTGP*IFLHTLSRHLLPS----ILHQQHLLHRS 331
           H   +P L   P  +LH   RH+LPS    +L ++H +HR+
Sbjct: 630 HHLLLPQLSHLPHQYLHHRLRHILPSRHRHLLRRKHTIHRN 670


>At5g07340.1 68418.m00838 calnexin, putative identical to calnexin
           homolog 2 from Arabidopsis thaliana [SP|Q38798], strong
           similarity to calnexin homolog 1, Arabidopsis thaliana,
           EMBL:AT08315 [SP|P29402]; contains Pfam profile PF00262
           calreticulin family
          Length = 532

 Score = 27.1 bits (57), Expect = 8.2
 Identities = 12/35 (34%), Positives = 18/35 (51%)
 Frame = +3

Query: 210 GQWFKQKLDHSNPSDLRIWKQRYFVNDSFFDYKNP 314
           G+W    +D  NP+   IWK R   N  +F+ + P
Sbjct: 330 GKWSSPLID--NPAYKGIWKPRDIPNPDYFELERP 362


>At1g57580.1 68414.m06534 F-box family protein contains Pfam:PF00646
           F-box domain; contains TIGRFAM TIGR01640 : F-box protein
           interaction domain
          Length = 346

 Score = 27.1 bits (57), Expect = 8.2
 Identities = 9/22 (40%), Positives = 16/22 (72%)
 Frame = -2

Query: 101 ECDNKNVKSHIKHK*NYYSQYF 36
           +C N++++SHI    N+ S+YF
Sbjct: 25  QCTNRSLQSHISKTPNFASEYF 46


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,400,396
Number of Sequences: 28952
Number of extensions: 278013
Number of successful extensions: 624
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 598
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 619
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1023490624
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)