Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0006_D06
(568 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_06_0824 - 32243495-32244319,32244449-32244859 44 6e-05
11_01_0750 - 6315126-6315896,6316371-6316784 34 0.091
03_05_0293 + 22849103-22849513,22849670-22849756,22850156-228502... 33 0.12
03_05_0294 + 22855503-22855946,22856346-22856399 32 0.28
01_01_1152 + 9170628-9171899 32 0.37
09_02_0338 + 7426999-7428322,7428390-7428646 29 2.0
03_02_0377 - 7898075-7898605,7900782-7901000,7901079-7901142,790... 29 2.0
10_08_1040 + 22503641-22503681,22503838-22504299,22506952-225073... 29 2.6
04_04_0619 + 26652923-26653267,26653440-26654273 29 2.6
02_05_0043 - 25366965-25368211,25368555-25369070,25369185-25370091 29 3.4
10_08_0960 - 21853010-21853282,21854078-21854449,21854555-218548... 28 4.5
08_02_0095 - 12285976-12286037,12286111-12287229,12287494-122886... 28 4.5
08_01_0978 + 9841441-9842169,9842303-9842590,9842768-9843612,984... 28 6.0
03_06_0584 + 34909800-34910261 28 6.0
10_01_0007 - 79867-79950,80258-80303,80409-80641,80765-80836,811... 27 7.9
>01_06_0824 - 32243495-32244319,32244449-32244859
Length = 411
Score = 44.4 bits (100), Expect = 6e-05
Identities = 37/144 (25%), Positives = 59/144 (40%), Gaps = 10/144 (6%)
Frame = +3
Query: 162 DKNVVSSPLGVMMLMLLYKAGAGEGSRAEIDKFLG--NGDYSGVANPYISLSKTFSEMNP 335
DKN+ SPL + + L AGA + +I FLG G +++L + P
Sbjct: 31 DKNLAVSPLSLHAALALLGAGARGETLDQIIAFLGPAGGPAHAALASHVALCSLADDSGP 90
Query: 336 ------DYFTMANKIYVGNKYTLDEKFT-ITVRQYQSEVETIDFSD-TKKAADIINQWAN 491
AN ++V L + + +Y++E + F D ++A IN+W
Sbjct: 91 GDDRGGPKVRFANGVWVDAALRLKAAYARVVADKYRAEARPVSFRDKLEEARREINEWFE 150
Query: 492 EKTRGHIKSPISDDTIDPNAAAAL 563
T G IK + D +D A L
Sbjct: 151 SATAGRIKDFLPKDAVDRATPAVL 174
>11_01_0750 - 6315126-6315896,6316371-6316784
Length = 394
Score = 33.9 bits (74), Expect = 0.091
Identities = 35/141 (24%), Positives = 58/141 (41%), Gaps = 11/141 (7%)
Frame = +3
Query: 174 VSSPLGVMMLMLLYKAGAGEGSRAEIDKFLG--NGDYSGVANPYISLSKTFSEMNPDYFT 347
VS+P V + + L GA +R ++ + LG G G A+ S+ + D T
Sbjct: 36 VSAP-AVHVSLALAAGGARGATRRQVLQALGCGGGGRGGAADAANVASRVVKRVLRDRST 94
Query: 348 -------MANKIYVGNKYTLDEKFT-ITVRQYQSEVETIDFSDTKK-AADIINQWANEKT 500
A ++ +L +F + Y S + DF + + A D IN W + T
Sbjct: 95 SGGPRLAFAGGVWADASRSLSPEFVGLAGNVYGSAAKKADFKNKPEDAPDQINSWVKDST 154
Query: 501 RGHIKSPISDDTIDPNAAAAL 563
+G + + + TID N L
Sbjct: 155 KGTVTTLLPAGTIDQNTGLVL 175
>03_05_0293 +
22849103-22849513,22849670-22849756,22850156-22850284,
22850507-22851262,22853474-22854250
Length = 719
Score = 33.5 bits (73), Expect = 0.12
Identities = 27/100 (27%), Positives = 47/100 (47%), Gaps = 6/100 (6%)
Frame = +3
Query: 165 KNVVSSPLGVMMLMLLYKAGAGEGSRAEIDKFLGN-GDYSGV---ANPYISL-SKTFSEM 329
+NV SPL + + + L AGAG +R ++ LG G G+ A + L S
Sbjct: 35 RNVAFSPLSLHVALSLVAAGAGGATRDQLASALGGPGSAEGLHAFAEQLVQLVLADASGA 94
Query: 330 NPDYFTMANKIYVGNKYTLDEKF-TITVRQYQSEVETIDF 446
A+ ++V +L + F + V +Y++E ++DF
Sbjct: 95 GGPRVAFADGVFVDASLSLKKTFGDVAVGKYKAETHSVDF 134
>03_05_0294 + 22855503-22855946,22856346-22856399
Length = 165
Score = 32.3 bits (70), Expect = 0.28
Identities = 29/109 (26%), Positives = 50/109 (45%), Gaps = 8/109 (7%)
Frame = +3
Query: 168 NVVSSPLGVMMLMLLYKAGAGEGSRAEIDKFL---GNGDYSGV---ANPYISL-SKTFSE 326
NV SPL + + + L AGAG +R ++ L G G G+ A + L S
Sbjct: 45 NVAFSPLSLHVALSLVAAGAGGATRDQLVSLLGVPGRGTAEGLHAFAEQVVQLVLADSSP 104
Query: 327 MNPDYFTMANKIYVGNKYTLDEKF-TITVRQYQSEVETIDFSDTKKAAD 470
A+ +++ + +L + F + V +Y++E ++DF TK D
Sbjct: 105 AGGPRVAFADGVFIDSSLSLMKSFKDVAVGKYKAETHSVDF-QTKVLRD 152
>01_01_1152 + 9170628-9171899
Length = 423
Score = 31.9 bits (69), Expect = 0.37
Identities = 29/136 (21%), Positives = 59/136 (43%), Gaps = 3/136 (2%)
Frame = +3
Query: 165 KNVVSSPLGVMMLMLLYKAGAGEGSRAEIDKFLGNGDYSGV-ANPYISLSKTFSEMNPDY 341
+N + SPL + L GA ++ E+ FLG+ + + +P L +
Sbjct: 59 RNFIVSPLSFHAALALVADGARGETQRELLGFLGSPSLAELHRSPTTRLVARLRHLPNTS 118
Query: 342 FTMANKIYVGNKYTLDEKFT-ITVRQYQSEVETIDF-SDTKKAADIINQWANEKTRGHIK 515
F A ++V L +F +Y + E DF + ++A + +N + ++ T G I+
Sbjct: 119 F--ACGVWVDRGRALTPEFADAAASRYAAVAEPADFATQPEQARERVNAFVSDATEGLIR 176
Query: 516 SPISDDTIDPNAAAAL 563
+ +++D + L
Sbjct: 177 DVLPPNSVDSSTVVVL 192
>09_02_0338 + 7426999-7428322,7428390-7428646
Length = 526
Score = 29.5 bits (63), Expect = 2.0
Identities = 12/35 (34%), Positives = 22/35 (62%)
Frame = -2
Query: 243 HDYLHRRQLCTEALASSRLMVKTQHSCPSMMYTFP 139
H+YLH+ + E + +SRLMV+ +C ++ + P
Sbjct: 379 HNYLHKERNDLERIYNSRLMVQHTRNCVTLPHRNP 413
>03_02_0377 -
7898075-7898605,7900782-7901000,7901079-7901142,
7901226-7901282,7901373-7901471,7901744-7901793,
7902378-7902422,7902967-7903062
Length = 386
Score = 29.5 bits (63), Expect = 2.0
Identities = 14/57 (24%), Positives = 26/57 (45%)
Frame = -1
Query: 241 RLPSPAPALYRSISIITPNGEDTTFLSFDDVYVSLRNCKEVLSMASPKAVLLYSWSE 71
R+P P P L+ ++S+I L+F Y + C + + + P+ L W +
Sbjct: 40 RIPLPGPPLFYNVSLIMSRRSRCVLLAFGYAYPAY-ECYKTVELNKPEIEQLIFWCQ 95
>10_08_1040 +
22503641-22503681,22503838-22504299,22506952-22507361,
22507484-22507640,22507718-22507937,22508053-22508106,
22508193-22508272,22508359-22508636,22509193-22509515,
22509590-22509853,22510453-22510860
Length = 898
Score = 29.1 bits (62), Expect = 2.6
Identities = 16/45 (35%), Positives = 23/45 (51%)
Frame = -2
Query: 276 NLHCLKTCRSPHDYLHRRQLCTEALASSRLMVKTQHSCPSMMYTF 142
NL+ +C H + RRQL T+ SS + +S PS Y+F
Sbjct: 799 NLNSSSSCGEEHWRMKRRQLETQQDESSYSAKQKSYSYPSTSYSF 843
>04_04_0619 + 26652923-26653267,26653440-26654273
Length = 392
Score = 29.1 bits (62), Expect = 2.6
Identities = 30/143 (20%), Positives = 59/143 (41%), Gaps = 3/143 (2%)
Frame = +3
Query: 144 TYTSSKDKNVVSSPLGVMMLMLLYKAGAGEGSRAEIDKFLGNGDYSGVANPYISLSKTFS 323
T ++ N + SPLG+ + L G + ++ FLG+ + + + +
Sbjct: 13 TKAITEQSNFMFSPLGLRAGLALLATGTDGETLRQLLAFLGS---QHIHQLNAASAGLLA 69
Query: 324 EMNP-DYFTMANKIYVGNKYTLDEKFTIT-VRQYQSEVETIDFSDTKKAADI-INQWANE 494
EM + A I+V L +F T + + ++DF + AA +N++ ++
Sbjct: 70 EMRAWPQLSFAAGIFVDRSLRLRPEFQSTAAAAHGAFPRSVDFQNQANAAAAEVNRFISQ 129
Query: 495 KTRGHIKSPISDDTIDPNAAAAL 563
T G + + IS T + L
Sbjct: 130 ATNGRLNNTISPGTFGSSTKCVL 152
>02_05_0043 - 25366965-25368211,25368555-25369070,25369185-25370091
Length = 889
Score = 28.7 bits (61), Expect = 3.4
Identities = 9/21 (42%), Positives = 13/21 (61%)
Frame = -2
Query: 315 FYLS*CTDWQPRYNLHCLKTC 253
+ L CTD+ P+Y HC +C
Sbjct: 296 YLLDGCTDYNPKYKEHCSTSC 316
>10_08_0960 -
21853010-21853282,21854078-21854449,21854555-21854862,
21854946-21855102
Length = 369
Score = 28.3 bits (60), Expect = 4.5
Identities = 15/25 (60%), Positives = 17/25 (68%)
Frame = +3
Query: 486 ANEKTRGHIKSPISDDTIDPNAAAA 560
A + RG KSP DD I+PNAAAA
Sbjct: 241 AAAQARGS-KSPEDDDNINPNAAAA 264
>08_02_0095 -
12285976-12286037,12286111-12287229,12287494-12288604,
12288695-12288757,12288851-12288913,12289268-12289318,
12289538-12289617,12290078-12290164,12290349-12290435,
12290889-12290975,12292106-12292308,12292756-12292922
Length = 1059
Score = 28.3 bits (60), Expect = 4.5
Identities = 17/85 (20%), Positives = 37/85 (43%)
Frame = -3
Query: 566 EERGSCIRIYGVIRDWRFNMSSGLLISPLINDVSCFFGIAEVNSFNFALVLTDSDREFLI 387
EE G CI R R+NM + + + +C FG A + + F + +F +
Sbjct: 625 EEYGDCISFDTTYRTNRYNMPFAPFVGVIGHGTTCLFGCAFLEA-EFESLWPQMIEKFNL 683
Query: 386 QSIFISDVDFIGHSEVIRIHLRERF 312
Q++ + + ++ + ++ + F
Sbjct: 684 QNVNYLKIMWKNRAQFVPVYFKYDF 708
>08_01_0978 +
9841441-9842169,9842303-9842590,9842768-9843612,
9843941-9844223,9844303-9844416
Length = 752
Score = 27.9 bits (59), Expect = 6.0
Identities = 18/49 (36%), Positives = 27/49 (55%), Gaps = 2/49 (4%)
Frame = +3
Query: 414 QYQSEVETIDFSDTKKA-ADIINQWANEKTRGHIKSPISDDTID-PNAA 554
++ E E + S+T++ ADI QWA R +K SD+T+ PN A
Sbjct: 188 EWDKEDEAVAESNTQQVLADIPVQWARNWARARVKKN-SDETLSFPNPA 235
>03_06_0584 + 34909800-34910261
Length = 153
Score = 27.9 bits (59), Expect = 6.0
Identities = 14/41 (34%), Positives = 23/41 (56%)
Frame = -1
Query: 265 PKNLSISARLPSPAPALYRSISIITPNGEDTTFLSFDDVYV 143
P + S +L A A Y+ + +ITP G++ F + DD Y+
Sbjct: 42 PSLKASSKKLDVSAMATYK-VKLITPEGQEHEFEAPDDTYI 81
>10_01_0007 -
79867-79950,80258-80303,80409-80641,80765-80836,
81135-81230,81506-81607,81684-82349
Length = 432
Score = 27.5 bits (58), Expect = 7.9
Identities = 15/50 (30%), Positives = 28/50 (56%), Gaps = 1/50 (2%)
Frame = +3
Query: 237 SRAEIDKFLGNGDYSGVANPYISLSKTFSEMNPDYFTMANKIYV-GNKYT 383
S A+ D GD V + + L+ F E++PD+ ++N +Y+ G+ Y+
Sbjct: 152 SYADTDAGFRTGDTIAVHHILVFLNNWFQEVHPDF--LSNPLYIAGDSYS 199
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,337,991
Number of Sequences: 37544
Number of extensions: 317161
Number of successful extensions: 913
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 893
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 913
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1305140760
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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