Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0006_D04
         (583 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC922.06 |||short chain dehydrogenase|Schizosaccharomyces pomb...    62   4e-11
SPAC23D3.11 |ayr1||1-acyldihydroxyacetone phosphate reductase |S...    54   2e-08
SPAC3G9.02 |oar2||3-oxoacyl-[acyl-carrier-protein] reductase Oar...    47   2e-06
SPCC162.03 |||short chain dehydrogenase |Schizosaccharomyces pom...    46   4e-06
SPBC16H5.14c ||SPBC21H7.08|short chain dehydrogenase DHRS family...    38   8e-04
SPCC1450.15 |||pig-F |Schizosaccharomyces pombe|chr 3|||Manual         35   0.010
SPAC4G9.15 |||ketoreductase |Schizosaccharomyces pombe|chr 1|||M...    33   0.030
SPCC330.08 |alg11|gmd3|alpha-1,2-mannosyltransferase Alg11|Schiz...    27   2.6  
SPAC664.03 |||RNA polymerase II associated Paf1 complex |Schizos...    26   4.6  
SPBC28F2.12 |rpb1||DNA-directed RNA polymerase II large subunit|...    25   6.1  
SPBC11B10.06 |sws1||SWIM domain containing-Srs2 interacting prot...    25   8.1  

>SPAC922.06 |||short chain dehydrogenase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 258

 Score = 62.5 bits (145), Expect = 4e-11
 Identities = 38/102 (37%), Positives = 56/102 (54%)
 Frame = +2

Query: 263 KVIESLGHFDALVNNAAVAVCEPFLECSPSNFDKTFDINVKAVLNISQIVARKMVENKTH 442
           KVI++LG  D L+NNA +A   PF + S  ++D    + ++      + V   M +    
Sbjct: 66  KVIQTLGPIDVLINNAGLADDTPFEQLSHESWDHDVSLVLRGNYLTQRYVIPHMAKQGKG 125

Query: 443 GAIVNISSQASKAALKDHAIYSASKAALDALTRAMALELGPL 568
           G+IVNI S      L   A YSA+KA L+ LT+A+A+  GPL
Sbjct: 126 GSIVNIGSVNGHIYLGSPA-YSAAKAGLENLTKALAVRYGPL 166


>SPAC23D3.11 |ayr1||1-acyldihydroxyacetone phosphate reductase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 296

 Score = 54.0 bits (124), Expect = 2e-08
 Identities = 29/95 (30%), Positives = 48/95 (50%)
 Frame = +2

Query: 281 GHFDALVNNAAVAVCEPFLECSPSNFDKTFDINVKAVLNISQIVARKMVENKTHGAIVNI 460
           G    L+NNA      P ++    +  K  D+N   V+ +++    +++  K  G IVN+
Sbjct: 76  GSLHYLINNAGAPCSAPAIDLDIEDVSKVMDVNFYGVIRMNKAFQHQLIRAK--GTIVNV 133

Query: 461 SSQASKAALKDHAIYSASKAALDALTRAMALELGP 565
           +S  S      +A Y+ASKAAL A +  + +EL P
Sbjct: 134 NSLVSYVPFAFNAAYNASKAALLAYSNTLRIELAP 168


>SPAC3G9.02 |oar2||3-oxoacyl-[acyl-carrier-protein] reductase Oar2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 236

 Score = 47.2 bits (107), Expect = 2e-06
 Identities = 30/109 (27%), Positives = 54/109 (49%), Gaps = 3/109 (2%)
 Frame = +2

Query: 242 ADWDKTRKVIESLGHFDALVNNAAVAVCEPFLECSPSNFDKTFDINVKAVLNISQIVARK 421
           +D    + + ES+   D +V+ A V      +  S    D     N+ + + +S++   +
Sbjct: 62  SDMKNLKSIFESV-EIDTVVHAAGVLQSSLCVRTSEKEIDSIICTNLVSAIKLSKMAILE 120

Query: 422 MVENKTHGA---IVNISSQASKAALKDHAIYSASKAALDALTRAMALEL 559
              NK       I+NISS+ S  AL   ++Y+ASKA L++ T+ +A E+
Sbjct: 121 WFRNKNSERDRLILNISSRLSTYALPGTSVYAASKAGLESFTKVLAAEV 169


>SPCC162.03 |||short chain dehydrogenase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 292

 Score = 46.0 bits (104), Expect = 4e-06
 Identities = 38/146 (26%), Positives = 64/146 (43%), Gaps = 5/146 (3%)
 Frame = +2

Query: 149 GANIVALSR-----TRSHLESLQSEYPSXXXXXXXXADWDKTRKVIESLGHFDALVNNAA 313
           G N++A SR     T  H + L+ +           A  D  R+     G+ D ++NNA 
Sbjct: 29  GYNVIACSRAPDTITIEHSKLLKLKLDVTDVKSVETAFKDAKRR----FGNVDIVINNAG 84

Query: 314 VAVCEPFLECSPSNFDKTFDINVKAVLNISQIVARKMVENKTHGAIVNISSQASKAALKD 493
             +   F   +     +  ++N   V  I++     M E+   G I+ ISS A       
Sbjct: 85  YGLVGEFESYNIEEMHRQMNVNFWGVAYITKEALNLMRESGKGGRILQISSVAGYYPSPC 144

Query: 494 HAIYSASKAALDALTRAMALELGPLW 571
            ++Y+ASK A++ L++ +  EL P W
Sbjct: 145 LSMYNASKFAVEGLSQTIMRELDPNW 170


>SPBC16H5.14c ||SPBC21H7.08|short chain dehydrogenase DHRS family
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 286

 Score = 38.3 bits (85), Expect = 8e-04
 Identities = 27/89 (30%), Positives = 45/89 (50%)
 Frame = +2

Query: 293 ALVNNAAVAVCEPFLECSPSNFDKTFDINVKAVLNISQIVARKMVENKTHGAIVNISSQA 472
           AL+N AA+A     L  S     K F+ NV   L I+  +   ++++  +  +VNI+S  
Sbjct: 109 ALINAAAIAPKNHLLSISRQELQKCFETNVIGQLAITSALFPLLLQDP-NPHVVNIASSL 167

Query: 473 SKAALKDHAIYSASKAALDALTRAMALEL 559
           +  +      YS+SKAAL +L   +  E+
Sbjct: 168 AYFSAMGVGAYSSSKAALVSLHETLEEEV 196


>SPCC1450.15 |||pig-F |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 503

 Score = 34.7 bits (76), Expect = 0.010
 Identities = 47/193 (24%), Positives = 74/193 (38%), Gaps = 11/193 (5%)
 Frame = +2

Query: 11  TCHKNFRYNLIVKHSKMEISFKGKRILVTXXXXXXXXXXXXELWRAGANIVALSRTRSHL 190
           T   NF Y L   HS          ILVT            EL   GAN+  ++RT + L
Sbjct: 9   TLQSNFGYFLTSCHS---------HILVTGGSQGLGKAIAKELVLRGANVTIVARTVTKL 59

Query: 191 ESLQSEYPSX--------XXXXXXXADWDKTRKVIESLGHF-DALVNNAAVAVCEPFLEC 343
           +   +E                     ++    +IE L    D +V+ A   +   F E 
Sbjct: 60  QEAVAELSDSKIHEDQQVSFESVDLTSYESVHSMIERLPFCPDHVVHCAGSCIPGFFTEL 119

Query: 344 SPSNFDKTFDINVKAVLNISQIVARKMVE-NKTHG-AIVNISSQASKAALKDHAIYSASK 517
            PS F+K    N  A + +     R+M E + ++   I+ + S  S   +  ++ YS  K
Sbjct: 120 DPSVFEKQMRQNYLASVYVCHAAIRRMKEISPSYSRRILLVGSLLSSLPIIGYSAYSPVK 179

Query: 518 AALDALTRAMALE 556
           AA+  L  ++  E
Sbjct: 180 AAVRNLADSLRQE 192


>SPAC4G9.15 |||ketoreductase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 341

 Score = 33.1 bits (72), Expect = 0.030
 Identities = 50/205 (24%), Positives = 79/205 (38%), Gaps = 21/205 (10%)
 Frame = +2

Query: 8   FTCHKNFRYN-LIVKHSKMEI--SFKGKRILVTXXXXXXXXXXXXELWRAGANIVALSRT 178
           FT   +F Y     K  K+ +  + KG   +VT            +L  +G N+V +SRT
Sbjct: 31  FTSFASFVYKTFFAKGVKLSVYGAKKGYWAVVTGATDGIGKEYATQLAMSGFNVVLISRT 90

Query: 179 RSHLESLQSEYPSXXXXXXXXADWDKTRKVIESLG--HFD-------ALVNNAAVAVCEP 331
           +  L++L  E  +           D T+   E+    H D        L+NN   +   P
Sbjct: 91  QEKLDALAKELETVAKVKTRTIAIDYTKTTAETFEKLHQDLVGTPITVLINNVGQSHYMP 150

Query: 332 --FLECSPSNFDKTFDIN-------VKAVLNISQIVARKMVENKTHGAIVNISSQASKAA 484
             F E +    D    IN        KAVL+I  +  R+  E      I+ + S A    
Sbjct: 151 TSFAETTVKEMDDIMHINCFGTLHTTKAVLSI-MLRERQKNEKGPRCLILTMGSFAGLLP 209

Query: 485 LKDHAIYSASKAALDALTRAMALEL 559
               + Y+ SKA L   + ++  E+
Sbjct: 210 SPYLSTYAGSKAFLSNWSASLGEEV 234


>SPCC330.08 |alg11|gmd3|alpha-1,2-mannosyltransferase
           Alg11|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 471

 Score = 26.6 bits (56), Expect = 2.6
 Identities = 10/34 (29%), Positives = 19/34 (55%)
 Frame = +3

Query: 324 VNLSSNAHHPTLTKHLISMLKQCSILVK*LPGKW 425
           + + +  H+PT++  ++  LKQ S+L K     W
Sbjct: 183 IPVGAYVHYPTISTDMLKSLKQVSLLAKVKMAYW 216


>SPAC664.03 |||RNA polymerase II associated Paf1 complex
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 457

 Score = 25.8 bits (54), Expect = 4.6
 Identities = 13/36 (36%), Positives = 19/36 (52%)
 Frame = +2

Query: 272 ESLGHFDALVNNAAVAVCEPFLECSPSNFDKTFDIN 379
           E+     A VN+A+  V EPF+     NFD +  +N
Sbjct: 259 ETAEEIQAKVNDASADVHEPFVYNHFRNFDASMHVN 294


>SPBC28F2.12 |rpb1||DNA-directed RNA polymerase II large
            subunit|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1752

 Score = 25.4 bits (53), Expect = 6.1
 Identities = 12/36 (33%), Positives = 20/36 (55%)
 Frame = +3

Query: 255  KLVKSSNLSDILMPW*TMLLLLYVNLSSNAHHPTLT 362
            K +K+ +L+  LMPW    + L  N+ +   H TL+
Sbjct: 1112 KNIKTPSLTIYLMPWIAANMDLAKNVQTQIEHTTLS 1147


>SPBC11B10.06 |sws1||SWIM domain containing-Srs2 interacting protein
           1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 209

 Score = 25.0 bits (52), Expect = 8.1
 Identities = 10/23 (43%), Positives = 16/23 (69%), Gaps = 2/23 (8%)
 Frame = +3

Query: 342 AHHPTLTKHLI--SMLKQCSILV 404
           +HHPT+  H++  S+L+ C  LV
Sbjct: 186 SHHPTICSHILAASILRACHNLV 208


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,196,963
Number of Sequences: 5004
Number of extensions: 40201
Number of successful extensions: 105
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 99
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 102
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 250133048
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)