Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0006_D03
         (393 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC336.04 |cdc6|pol3, pold, mis10|DNA polymerase delta catalyti...    29   0.34 
SPCP1E11.04c |pal1||membrane associated protein Pal1 |Schizosacc...    28   0.45 
SPCC757.12 |||alpha-amylase homolog |Schizosaccharomyces pombe|c...    26   2.4  
SPAC589.02c |med13|spTrap240, srb9|mediator complex subunit Srb9...    25   3.2  
SPBC83.07 |jmj3||Lid2 complex subunit Jmj3|Schizosaccharomyces p...    25   4.2  
SPBC13E7.08c |||RNA polymerase II associated Paf1 complex |Schiz...    25   4.2  
SPBC21D10.09c |||ubiquitin-protein ligase E3 |Schizosaccharomyce...    24   7.3  
SPAC1805.04 |nup132|Nup133b, Nup133b|nucleoporin Nup132|Schizosa...    24   9.7  
SPAC22F3.02 |atf31||transcription factor Atf31|Schizosaccharomyc...    24   9.7  
SPBC1773.16c |||transcription factor |Schizosaccharomyces pombe|...    24   9.7  
SPBC13A2.03 |||phosphatidate cytidylyltransferase|Schizosaccharo...    24   9.7  

>SPBC336.04 |cdc6|pol3, pold, mis10|DNA polymerase delta catalytic
           subunit Cdc6 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1086

 Score = 28.7 bits (61), Expect = 0.34
 Identities = 20/76 (26%), Positives = 33/76 (43%), Gaps = 10/76 (13%)
 Frame = -3

Query: 238 WLNFNQLSMLP-----STKSPCHV-----SCAYHNMVIPDSHLDRIVLIHRVITERFQQV 89
           W+N+  L  LP     S  +P  +      CA    V PD  +D ++ I  ++T+ +   
Sbjct: 273 WINYKDLISLPAEGQWSKMAPLRIMSFDIECAGRKGVFPDPSIDPVIQIASIVTQ-YGDS 331

Query: 88  CPRISPLVGVDTAGSI 41
            P +  +  VDT   I
Sbjct: 332 TPFVRNVFCVDTCSQI 347


>SPCP1E11.04c |pal1||membrane associated protein Pal1
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 425

 Score = 28.3 bits (60), Expect = 0.45
 Identities = 15/28 (53%), Positives = 18/28 (64%)
 Frame = -1

Query: 360 SAPASLESVHYVRPTFSVRIGSHRPNRS 277
           S  +SL+S   +R   SVR GSHRP RS
Sbjct: 128 STQSSLKSRGSIRRYKSVREGSHRPGRS 155


>SPCC757.12 |||alpha-amylase homolog |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 625

 Score = 25.8 bits (54), Expect = 2.4
 Identities = 20/50 (40%), Positives = 26/50 (52%)
 Frame = -1

Query: 369 PHGSAPASLESVHYVRPTFSVRIGSHRPNRSGLMRASFN*ST*SG*TSTN 220
           P  S  ASL SVH    T S +  S   +RSG   +S   S+ SG TS++
Sbjct: 511 PSTSMSASLSSVHTSSATSSSKSSSSSSSRSGSSSSS---SSRSGSTSSS 557


>SPAC589.02c |med13|spTrap240, srb9|mediator complex subunit
           Srb9|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1223

 Score = 25.4 bits (53), Expect = 3.2
 Identities = 20/68 (29%), Positives = 33/68 (48%)
 Frame = -3

Query: 205 STKSPCHVSCAYHNMVIPDSHLDRIVLIHRVITERFQQVCPRISPLVGVDTAGSITDNRD 26
           S+K+P ++S        PDS+ D + L H+V+    +      S L  +D   +IT  ++
Sbjct: 588 SSKTPTNIS----EQSNPDSNYDTLSLAHQVLMNESKSANFDFSFLKSLDLQPTITLGKN 643

Query: 25  SGLIFILS 2
             L  ILS
Sbjct: 644 DLLNAILS 651


>SPBC83.07 |jmj3||Lid2 complex subunit Jmj3|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 752

 Score = 25.0 bits (52), Expect = 4.2
 Identities = 8/21 (38%), Positives = 12/21 (57%)
 Frame = +1

Query: 292 MRSDPDTKSWPNIVHAFQTSW 354
           +RS+    +WPN+ H F   W
Sbjct: 186 LRSNTLINTWPNVGHLFAGKW 206


>SPBC13E7.08c |||RNA polymerase II associated Paf1 complex
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 429

 Score = 25.0 bits (52), Expect = 4.2
 Identities = 10/28 (35%), Positives = 19/28 (67%)
 Frame = -1

Query: 378 RIGPHGSAPASLESVHYVRPTFSVRIGS 295
           R+GP GS  ++ + V +   ++S+RIG+
Sbjct: 141 RLGPSGSYQSNAQIVQWSDGSYSLRIGN 168


>SPBC21D10.09c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1610

 Score = 24.2 bits (50), Expect = 7.3
 Identities = 16/30 (53%), Positives = 17/30 (56%), Gaps = 1/30 (3%)
 Frame = +2

Query: 113 YTVDENDP-IKMRVRDNHIMICTRYMTG*F 199
           YT D +DP IK  VRD    I TRY  G F
Sbjct: 418 YT-DSSDPQIKDHVRDRLRTIFTRYFKGEF 446


>SPAC1805.04 |nup132|Nup133b, Nup133b|nucleoporin
           Nup132|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1162

 Score = 23.8 bits (49), Expect = 9.7
 Identities = 13/34 (38%), Positives = 18/34 (52%), Gaps = 1/34 (2%)
 Frame = +3

Query: 27  SRLSVMDPAVSTPTRGEIRG-QTCWKRSVITRWM 125
           S L V+D  +  PT G +     CWK S+  R+M
Sbjct: 297 SGLEVLDLTIC-PTNGNLVSFLVCWKNSINYRYM 329


>SPAC22F3.02 |atf31||transcription factor Atf31|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 209

 Score = 23.8 bits (49), Expect = 9.7
 Identities = 13/32 (40%), Positives = 19/32 (59%)
 Frame = -3

Query: 232 NFNQLSMLPSTKSPCHVSCAYHNMVIPDSHLD 137
           +F++LS   ++KSP  +S A HN   P   LD
Sbjct: 80  DFDELSEYTASKSPSIISEASHNS--PSRELD 109


>SPBC1773.16c |||transcription factor |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 595

 Score = 23.8 bits (49), Expect = 9.7
 Identities = 9/19 (47%), Positives = 11/19 (57%)
 Frame = +1

Query: 334 HAFQTSWSGSVRTNPDDDW 390
           H+F T W  + R  PD DW
Sbjct: 157 HSFPT-WKSAFRDVPDKDW 174


>SPBC13A2.03 |||phosphatidate
           cytidylyltransferase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 439

 Score = 23.8 bits (49), Expect = 9.7
 Identities = 16/50 (32%), Positives = 23/50 (46%), Gaps = 3/50 (6%)
 Frame = -3

Query: 247 DLKWLNFNQLSMLPSTKSPCHVSCAY---HNMVIPDSHLDRIVLIHRVIT 107
           DL W  F     L +T    +    Y   H++ I DS +  +VL HR I+
Sbjct: 104 DLPWTRFINWYFLMTTLYYAYGESIYAYFHHLFIMDSFMLPLVLHHRFIS 153


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,809,378
Number of Sequences: 5004
Number of extensions: 36358
Number of successful extensions: 91
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 91
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 91
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 130061696
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)