Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0006_D03
         (393 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_03_1331 - 29389159-29390300,29390415-29390822,29390930-29391413     33   0.082
03_02_0187 - 6248226-6249226,6249296-6250148                           29   1.0  
02_02_0372 + 9522751-9522964,9523043-9523255,9523471-9523555,952...    29   1.8  
03_01_0546 - 4089502-4089661,4089959-4090025,4091243-4091684           28   3.1  
05_03_0020 - 7433619-7434089                                           26   9.4  
02_02_0333 + 9042393-9043610                                           26   9.4  
01_01_1102 - 8734984-8736090,8736430-8736557,8736671-8736708,873...    26   9.4  

>06_03_1331 - 29389159-29390300,29390415-29390822,29390930-29391413
          Length = 677

 Score = 33.1 bits (72), Expect = 0.082
 Identities = 19/62 (30%), Positives = 32/62 (51%), Gaps = 2/62 (3%)
 Frame = -3

Query: 193 PCHVSCAYHNMVIPDSHLDRIVLIHRV--ITERFQQVCPRISPLVGVDTAGSITDNRDSG 20
           PC  S   H M  P    DR+ L  R+  I E+ + VC ++S ++ ++    +  NR+ G
Sbjct: 172 PCKASHIEHTMKTPKLKFDRVDLSTRMKHIVEQLKPVCAKVSTILNLEL---LESNRNIG 228

Query: 19  LI 14
           L+
Sbjct: 229 LM 230


>03_02_0187 - 6248226-6249226,6249296-6250148
          Length = 617

 Score = 29.5 bits (63), Expect = 1.0
 Identities = 13/34 (38%), Positives = 19/34 (55%), Gaps = 3/34 (8%)
 Frame = +1

Query: 283 IWSMRSDP---DTKSWPNIVHAFQTSWSGSVRTN 375
           +WS +SD    D + WP    A +T WSG+  +N
Sbjct: 539 LWSEQSDETVLDARLWPRAAAAAETLWSGNKGSN 572


>02_02_0372 +
           9522751-9522964,9523043-9523255,9523471-9523555,
           9524373-9524448,9524974-9525150,9525473-9525566,
           9526357-9526466,9526568-9526657,9526752-9526832,
           9528468-9529277,9530777-9530896
          Length = 689

 Score = 28.7 bits (61), Expect = 1.8
 Identities = 14/40 (35%), Positives = 24/40 (60%), Gaps = 2/40 (5%)
 Frame = -3

Query: 196 SPCHVS--CAYHNMVIPDSHLDRIVLIHRVITERFQQVCP 83
           S  H+S  C+Y     P S +++IV   R+ +++F+Q CP
Sbjct: 413 SSVHMSYKCSYVKQPPPVSEINQIVTEARIYSDQFRQNCP 452


>03_01_0546 - 4089502-4089661,4089959-4090025,4091243-4091684
          Length = 222

 Score = 27.9 bits (59), Expect = 3.1
 Identities = 11/28 (39%), Positives = 20/28 (71%)
 Frame = +2

Query: 62  SDQRRNTRTNLLEAFRDYTVDENDPIKM 145
           S ++++TRT++ EA R    D +DP+K+
Sbjct: 173 SPEKKSTRTSMAEATRMKESDADDPLKL 200


>05_03_0020 - 7433619-7434089
          Length = 156

 Score = 26.2 bits (55), Expect = 9.4
 Identities = 14/35 (40%), Positives = 15/35 (42%)
 Frame = +2

Query: 44  GPGCIYSDQRRNTRTNLLEAFRDYTVDENDPIKMR 148
           G G    DQ   +   L EAFR Y  D N  I  R
Sbjct: 73  GKGGDAKDQEAASEAELREAFRMYDADSNGKISAR 107


>02_02_0333 + 9042393-9043610
          Length = 405

 Score = 26.2 bits (55), Expect = 9.4
 Identities = 12/29 (41%), Positives = 15/29 (51%)
 Frame = +1

Query: 292 MRSDPDTKSWPNIVHAFQTSWSGSVRTNP 378
           +RS    K W  IVHA + +WS  V   P
Sbjct: 62  IRSGSVCKRWHEIVHARRQTWSKMVPQKP 90


>01_01_1102 -
           8734984-8736090,8736430-8736557,8736671-8736708,
           8736815-8737030,8737252-8737413,8738381-8738559,
           8738693-8738799,8738918-8739082,8739201-8739284,
           8739364-8739559
          Length = 793

 Score = 26.2 bits (55), Expect = 9.4
 Identities = 16/49 (32%), Positives = 21/49 (42%)
 Frame = -2

Query: 233 ELQPIIHVTLDEITLSCIVCIS*YGYPGLAS*SDRSHPPCNHGTLPTGL 87
           E++P+I   LD       VCI  YG  G          P N G +P G+
Sbjct: 154 EVEPVIKSALDGYN----VCIFAYGQTGSGKTYTMEGKPTNLGVIPRGI 198


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,788,832
Number of Sequences: 37544
Number of extensions: 238470
Number of successful extensions: 507
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 498
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 507
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 672845152
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)