Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0006_D03
         (393 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81136-1|CAB03458.1| 1256|Caenorhabditis elegans Hypothetical pr...    28   2.7  
Z74039-9|CAA98507.1|  564|Caenorhabditis elegans Hypothetical pr...    28   2.7  
Z73907-1|CAA98124.1| 4753|Caenorhabditis elegans Hypothetical pr...    28   2.7  
U19747-1|AAA92689.1|  564|Caenorhabditis elegans nicotinic acety...    28   2.7  
U19746-1|AAA92688.1|  564|Caenorhabditis elegans nicotinic acety...    28   2.7  
M96150-1|AAA28105.1| 4753|Caenorhabditis elegans LDL receptor-re...    28   2.7  
AC025716-20|AAT39977.2|  946|Caenorhabditis elegans Hypothetical...    27   3.6  

>Z81136-1|CAB03458.1| 1256|Caenorhabditis elegans Hypothetical
           protein W02B8.2 protein.
          Length = 1256

 Score = 27.9 bits (59), Expect = 2.7
 Identities = 16/52 (30%), Positives = 19/52 (36%)
 Frame = -3

Query: 241 KWLNFNQLSMLPSTKSPCHVSCAYHNMVIPDSHLDRIVLIHRVITERFQQVC 86
           KWL F   S+L    S C V   +       SH D  V +H     R    C
Sbjct: 742 KWLEFRHYSVLSMKCSLCFVGITFFTKANKCSHCD--VRVHASCAPRVNNTC 791


>Z74039-9|CAA98507.1|  564|Caenorhabditis elegans Hypothetical
           protein K03B8.9 protein.
          Length = 564

 Score = 27.9 bits (59), Expect = 2.7
 Identities = 18/52 (34%), Positives = 28/52 (53%)
 Frame = -3

Query: 244 LKWLNFNQLSMLPSTKSPCHVSCAYHNMVIPDSHLDRIVLIHRVITERFQQV 89
           L W N N+  M+ ST  P      +H++ IPD++L   V + R  TER+  +
Sbjct: 114 LDW-NPNEYGMINSTIIP------FHHLWIPDTYLYNSVKMSRDETERYMNI 158


>Z73907-1|CAA98124.1| 4753|Caenorhabditis elegans Hypothetical protein
            F29D11.1 protein.
          Length = 4753

 Score = 27.9 bits (59), Expect = 2.7
 Identities = 13/35 (37%), Positives = 20/35 (57%), Gaps = 4/35 (11%)
 Frame = +3

Query: 3    DNMKIKPESRLSVMDPAVSTPT----RGEIRGQTC 95
            DN++  P ++L    P   TPT    RG ++G+TC
Sbjct: 2404 DNLRKSPCTQLCFATPGTQTPTCSCARGVLKGRTC 2438


>U19747-1|AAA92689.1|  564|Caenorhabditis elegans nicotinic
           acetylcholine receptoralpha subunit precursor protein.
          Length = 564

 Score = 27.9 bits (59), Expect = 2.7
 Identities = 18/52 (34%), Positives = 28/52 (53%)
 Frame = -3

Query: 244 LKWLNFNQLSMLPSTKSPCHVSCAYHNMVIPDSHLDRIVLIHRVITERFQQV 89
           L W N N+  M+ ST  P      +H++ IPD++L   V + R  TER+  +
Sbjct: 114 LDW-NPNEYGMINSTIIP------FHHLWIPDTYLYNSVKMSRDETERYMNI 158


>U19746-1|AAA92688.1|  564|Caenorhabditis elegans nicotinic
           acetylcholine receptoralpha subunit protein.
          Length = 564

 Score = 27.9 bits (59), Expect = 2.7
 Identities = 18/52 (34%), Positives = 28/52 (53%)
 Frame = -3

Query: 244 LKWLNFNQLSMLPSTKSPCHVSCAYHNMVIPDSHLDRIVLIHRVITERFQQV 89
           L W N N+  M+ ST  P      +H++ IPD++L   V + R  TER+  +
Sbjct: 114 LDW-NPNEYGMINSTIIP------FHHLWIPDTYLYNSVKMSRDETERYMNI 158


>M96150-1|AAA28105.1| 4753|Caenorhabditis elegans LDL receptor-related
            protein protein.
          Length = 4753

 Score = 27.9 bits (59), Expect = 2.7
 Identities = 13/35 (37%), Positives = 20/35 (57%), Gaps = 4/35 (11%)
 Frame = +3

Query: 3    DNMKIKPESRLSVMDPAVSTPT----RGEIRGQTC 95
            DN++  P ++L    P   TPT    RG ++G+TC
Sbjct: 2404 DNLRKSPCTQLCFATPGTQTPTCSCARGVLKGRTC 2438


>AC025716-20|AAT39977.2|  946|Caenorhabditis elegans Hypothetical
           protein Y39G10AR.18a protein.
          Length = 946

 Score = 27.5 bits (58), Expect = 3.6
 Identities = 10/27 (37%), Positives = 16/27 (59%)
 Frame = +1

Query: 310 TKSWPNIVHAFQTSWSGSVRTNPDDDW 390
           TKS+  +   F ++WSGS  T+   +W
Sbjct: 107 TKSFNRVAKPFASNWSGSYNTDTLKEW 133


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,982,012
Number of Sequences: 27780
Number of extensions: 203270
Number of successful extensions: 507
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 485
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 507
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 598330768
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)