Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0006_D03
         (393 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g50370.1 68416.m05508 expressed protein                             29   1.1  
At2g07290.1 68415.m00836 hypothetical protein                          27   3.4  
At4g30990.1 68417.m04398 expressed protein ; expression supporte...    27   4.5  

>At3g50370.1 68416.m05508 expressed protein
          Length = 2179

 Score = 29.1 bits (62), Expect = 1.1
 Identities = 12/37 (32%), Positives = 21/37 (56%)
 Frame = +2

Query: 26  IPVVRYGPGCIYSDQRRNTRTNLLEAFRDYTVDENDP 136
           +P+VR  P   ++D  R+T   L +  RD+   +N+P
Sbjct: 235 LPLVRLAPRSDWADDERDTSHGLRDRDRDHGYSKNEP 271


>At2g07290.1 68415.m00836 hypothetical protein
          Length = 134

 Score = 27.5 bits (58), Expect = 3.4
 Identities = 19/53 (35%), Positives = 24/53 (45%), Gaps = 1/53 (1%)
 Frame = -3

Query: 247 DLKWLNFNQ-LSMLPSTKSPCHVSCAYHNMVIPDSHLDRIVLIHRVITERFQQ 92
           D  W +F Q LS  P T+  C      +N  I D  L +  + HRV   RF Q
Sbjct: 49  DPDWPSFQQILSKFPDTEHLCPDGGLVNNSFILDIVLPQKWIDHRVCNPRFFQ 101


>At4g30990.1 68417.m04398 expressed protein ; expression supported
           by MPSS
          Length = 2138

 Score = 27.1 bits (57), Expect = 4.5
 Identities = 10/28 (35%), Positives = 15/28 (53%)
 Frame = -3

Query: 193 PCHVSCAYHNMVIPDSHLDRIVLIHRVI 110
           P  VSC  H     D  L+++ LIH ++
Sbjct: 152 PAEVSCVRHRRHSQDEQLEKVPLIHSLV 179


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,509,329
Number of Sequences: 28952
Number of extensions: 193083
Number of successful extensions: 438
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 433
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 438
length of database: 12,070,560
effective HSP length: 73
effective length of database: 9,957,064
effective search space used: 567552648
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)