Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0006_D02
(580 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC191.09c |gst1||glutathione S-transferase Gst1|Schizosaccharo... 49 6e-07
SPCC965.07c |gst2||glutathione S-transferase Gst2|Schizosaccharo... 48 8e-07
SPAC688.04c |gst3||glutathione S-transferase |Schizosaccharomyce... 40 2e-04
SPAC18B11.03c |||N-acetyltransferase |Schizosaccharomyces pombe|... 28 0.86
SPAC343.04c |gnr1||heterotrimeric G protein beta subunit Gnr1|Sc... 27 2.6
SPBP19A11.06 |lid2|SPBP4H10.01|Lid2 complex subunit Lid2 |Schizo... 26 4.6
SPBPB8B6.06c ||SPAPB8B6.06c, SPAPB8B6.06c|conserved fungal prote... 25 6.1
SPAC977.11 |||conserved fungal protein|Schizosaccharomyces pombe... 25 6.1
>SPCC191.09c |gst1||glutathione S-transferase
Gst1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 229
Score = 48.8 bits (111), Expect = 6e-07
Identities = 33/82 (40%), Positives = 40/82 (48%), Gaps = 4/82 (4%)
Frame = +2
Query: 92 LDLKINKIVVDFANGVHLSPEYLKLNPQHTVPILVD---NDFCVAESRVIIRYLASKYG- 259
LDL V+F+ SPE+L LNP VP L+D ND+ + ES I+ YLA KY
Sbjct: 25 LDLTYETRYVNFSKNEQKSPEHLALNPNGRVPTLIDHHNNDYTIWESDAILIYLADKYDT 84
Query: 260 ENSNLYPEDLQARAKVDYILDF 325
E P D KV L F
Sbjct: 85 ERKISLPRDHPEYYKVIQYLFF 106
>SPCC965.07c |gst2||glutathione S-transferase
Gst2|Schizosaccharomyces pombe|chr 3|||Manual
Length = 230
Score = 48.4 bits (110), Expect = 8e-07
Identities = 28/65 (43%), Positives = 35/65 (53%), Gaps = 3/65 (4%)
Frame = +2
Query: 71 VLLTAAILDLKINKIVVDFANGVHLSPEYLKLNPQHTVPILVD---NDFCVAESRVIIRY 241
V+L L+L +I DF G E+L LNP VP LVD ND+ + ES I+ Y
Sbjct: 18 VVLALKELNLSYEQIFYDFQKGEQKCKEHLALNPNGRVPTLVDHKNNDYTIWESDAILIY 77
Query: 242 LASKY 256
LA KY
Sbjct: 78 LADKY 82
>SPAC688.04c |gst3||glutathione S-transferase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 242
Score = 40.3 bits (90), Expect = 2e-04
Identities = 22/64 (34%), Positives = 31/64 (48%)
Frame = +2
Query: 149 PEYLKLNPQHTVPILVDNDFCVAESRVIIRYLASKYGENSNLYPEDLQARAKVDYILDFD 328
P Y KL+P PI+VD+ ES I+ +L KYG + ED+ K + + F
Sbjct: 40 PAYTKLSPLGKSPIVVDDGVTYIESAAILEHLVRKYGPSFKPSEEDVAELEKYELWMHFS 99
Query: 329 LGSL 340
SL
Sbjct: 100 EASL 103
>SPAC18B11.03c |||N-acetyltransferase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 440
Score = 28.3 bits (60), Expect = 0.86
Identities = 12/24 (50%), Positives = 19/24 (79%)
Frame = +3
Query: 375 YMAVLHRPMLGSRSYNINSKS*IV 446
Y A++++PMLG+R +N +SK IV
Sbjct: 42 YHAIVNQPMLGARIHNCHSKIPIV 65
>SPAC343.04c |gnr1||heterotrimeric G protein beta subunit
Gnr1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 507
Score = 26.6 bits (56), Expect = 2.6
Identities = 16/53 (30%), Positives = 27/53 (50%)
Frame = -2
Query: 249 LAKYLMITRDSATQKSLSTRIGTVCCGLSFKYSGERCTPLAKSTTILFILRSN 91
+A Y + TR+ + SL +++ ++C KY+ T L TT L+ L N
Sbjct: 366 IAIYSVETRECIKKISLQSKVTSICLSKDSKYA---LTNLEPHTTFLWDLEEN 415
>SPBP19A11.06 |lid2|SPBP4H10.01|Lid2 complex subunit Lid2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1513
Score = 25.8 bits (54), Expect = 4.6
Identities = 14/38 (36%), Positives = 20/38 (52%)
Frame = +3
Query: 453 KARRTQPALSSVSPISLYSPVSPLWTLLISASGSSKCP 566
K R T+ + SPI S SP+ T+ ++ S S K P
Sbjct: 226 KIRNTRSSAQQESPIPETSAQSPVQTIQVNGSTSLKRP 263
>SPBPB8B6.06c ||SPAPB8B6.06c, SPAPB8B6.06c|conserved fungal
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 311
Score = 25.4 bits (53), Expect = 6.1
Identities = 23/89 (25%), Positives = 39/89 (43%), Gaps = 9/89 (10%)
Frame = -2
Query: 306 TLALAWRSSGYRLLFSPYLLAKYLMITRDSATQKSLSTRIGTVCCG------LSFKY--- 154
T + R G+ L+FSP+ L + R GT+C LS Y
Sbjct: 179 TTNVTHRGIGFSLIFSPFAALTRLYLAR-FLNSPQYFIPYGTLCANVFATLLLSIMYMIP 237
Query: 153 SGERCTPLAKSTTILFILRSNIAAVNSTV 67
CTP+++S +++ +++ AV ST+
Sbjct: 238 QITHCTPVSRS--VMYGIQNGFCAVLSTL 264
>SPAC977.11 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 311
Score = 25.4 bits (53), Expect = 6.1
Identities = 23/89 (25%), Positives = 39/89 (43%), Gaps = 9/89 (10%)
Frame = -2
Query: 306 TLALAWRSSGYRLLFSPYLLAKYLMITRDSATQKSLSTRIGTVCCG------LSFKY--- 154
T + R G+ L+FSP+ L + R GT+C LS Y
Sbjct: 179 TTNVTHRGIGFSLIFSPFAALTRLYLAR-FLNSPQYFIPYGTLCANVFATLLLSIMYMIP 237
Query: 153 SGERCTPLAKSTTILFILRSNIAAVNSTV 67
CTP+++S +++ +++ AV ST+
Sbjct: 238 QITHCTPVSRS--VMYGIQNGFCAVLSTL 264
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,407,085
Number of Sequences: 5004
Number of extensions: 47485
Number of successful extensions: 102
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 100
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 100
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 248115846
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -