Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0006_C24
         (498 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC14F5.05c |sam1||S-adenosylmethionine synthetase |Schizosacch...    27   2.1  
SPAC12G12.09 |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    26   3.6  
SPBC3H7.04 |||mitochondrial ribosomal protein subunit S26|Schizo...    25   8.4  

>SPBC14F5.05c |sam1||S-adenosylmethionine synthetase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 382

 Score = 26.6 bits (56), Expect = 2.1
 Identities = 12/21 (57%), Positives = 15/21 (71%)
 Frame = +3

Query: 435 FLVTFESGGQGPPDQMFDPIS 497
           FL T ES G+G PD++ D IS
Sbjct: 5   FLFTSESVGEGHPDKICDQIS 25


>SPAC12G12.09 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 977

 Score = 25.8 bits (54), Expect = 3.6
 Identities = 14/35 (40%), Positives = 20/35 (57%)
 Frame = +3

Query: 222 LKIFVLWRLTDLINIGVFSRQASFPQC*FRGKSFG 326
           L IF+ +  +DL N+GV S  A+      +GK FG
Sbjct: 534 LDIFI-YSPSDLSNVGVLSNTAALISAVSKGKRFG 567


>SPBC3H7.04 |||mitochondrial ribosomal protein subunit
           S26|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 220

 Score = 24.6 bits (51), Expect = 8.4
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = +3

Query: 39  LNNIS*KLINHKCLFSGLVTKVKAS 113
           L N S +L+NH   FSGL++  + S
Sbjct: 68  LFNYSSQLVNHDFFFSGLISPERPS 92


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,127,249
Number of Sequences: 5004
Number of extensions: 43281
Number of successful extensions: 88
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 87
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 88
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 196153982
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)